KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:19 2014 Check: 00 .. Name: ENSP00000400892/1-521 Len: 590 Check: 8116 Weight: 1.00 Name: ENSBTAP00000006753/1-528 Len: 590 Check: 2458 Weight: 1.00 Name: bmy_20828T0/1-565 Len: 590 Check: 7449 Weight: 1.00 Name: ENSTTRP00000015197/1-386 Len: 590 Check: 2765 Weight: 1.00 // 1 50 ENSP00000400892/1-521 MEASVLSPTS WEKRRAWLRQ SRNWQTQVLE EEAAAALQDV PDPEPSSLDD ENSBTAP00000006753/1-528 MEGSVLSPTS WERRRAWLRQ SRHWQTQVLE EEAAAALQNV PDAEPSGMDD bmy_20828T0/1-565 MEGSVLSPTS WERRRAWLRQ SRHWQTQVLE EEAAAALQGV PDPEPSGLDD ENSTTRP00000015197/1-386 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000400892/1-521 VFQEGNPINK IEDWLQDCGY SEEGFSEEAG QFIYNGFCSH GTSFEDDLTL ENSBTAP00000006753/1-528 VFQEGNPINK IEDWLQDCGY SEEGFFEEAG QLNYNGCPSH GTSFEDDLSL bmy_20828T0/1-565 VFQEGNPINK IEDWLQD--- ---------- -----WCPSH GTSFEDDLTL ENSTTRP00000015197/1-386 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000400892/1-521 GAEATLLAAN GKLFSRSFLE TARPCQLLDL GCSLASSSMT GGTNKTSSSI ENSBTAP00000006753/1-528 GAEATLLAAS SKLYSRSFLE TSRPGQLLDL GCSLASSSMT GGTNKTSSSI bmy_20828T0/1-565 GAEATLLAAN SKLFSRSFLE TARPGQLLDL GCSLASSSMT GGTNKTSSSI ENSTTRP00000015197/1-386 ---------- ---------- ---------- --------MT GGTNKTSSSI 151 200 ENSP00000400892/1-521 SEILDKVQED AEDVLFSLGF GQEDHKDTSR IPARFFTTPS QAKGIDFQLF ENSBTAP00000006753/1-528 SEILDKVQED AEDVLFSLGF GQEDHKDTSR IPARFFTTPS QAKGIDFQLF bmy_20828T0/1-565 SEILDKVQED AEDVLFSLGF GQEDHKDTSR IPARFFTTPS QAKGIDFQLF ENSTTRP00000015197/1-386 SEILDKVQED AEDVLFSLGF GQEDHKDTSR IPARFFTTPS QAKGIDFQLF 201 250 ENSP00000400892/1-521 LKSQVRRIEM EDPCLMLASR FKQVQTLAVT ADAFFCLYSY VSKTPVQKFT ENSBTAP00000006753/1-528 LKSQVRRIEM EDPCLMLASR FKQVQTLAVT ADAFFCLYSY VSKTPVQKFT bmy_20828T0/1-565 LKSQMRRIEM EDPCLMLASR FKQVQTLAVT ADAFFCLYSY VSKTPVQKFT ENSTTRP00000015197/1-386 LKSQVRRIEM EDPCLMLASR FKQVQTLAVT ADAFFCLYSY VSKTPVQKFT 251 300 ENSP00000400892/1-521 PSHMFWNCNH PTDVPSIRIL SREPEPQSPR DRLRKAISKM CLYTCPRDRP ENSBTAP00000006753/1-528 PSHMFWNCN- PTDVPSIKIL SPEPEPHSPR ERLRKAISKM CLYTCPRDRL bmy_20828T0/1-565 PSHMFWNCN- PTDVPSVKIL APEPEPHSPR ERLRKAISKM CLYTCPRDRL ENSTTRP00000015197/1-386 PSHMFWNCN- ATDVPSIKIL APEPEPHSPR ERLRKAISKM CLYTCPRDRL 301 350 ENSP00000400892/1-521 PPPHNTPKRN SLDQVVLEVM DKVKEEKQFL QQDSDLGQFS QEDPVPPAEG ENSBTAP00000006753/1-528 SPPDHTPKRN SLDQVVWEVM DRVRGEKLVL QQDSGFGPGP QGDPVPPFKG bmy_20828T0/1-565 SPPDHTPKRN SLDQVVWEVM DRVRGEKLVL QQDPGFGPVP QGDPVPPIRG ENSTTRP00000015197/1-386 SPPDHTPKRN SLDQVVWEVM DRVRGEKLVL QQDPGFGPVP QGDPVPPIRG 351 400 ENSP00000400892/1-521 KKLPTSPYPC VFCCEEETQQ RMSTVLAPSQ TLDSNPKVPC CTHSLPIEDP ENSBTAP00000006753/1-528 TKLPTSSCPC VLCLKEETQQ GMSTWQEPSE TMDSDLKIPC CSRSLPRADI bmy_20828T0/1-565 TKLPTSSCPC ALCFKEETQQ GMSTLQEPSE TLDSN---PC CTHSLPRADL ENSTTRP00000015197/1-386 TKLPTSSCPC ALCFKEETQQ GMSTLQEPSE TLDSN---PC CTHSVPRADL 401 450 ENSP00000400892/1-521 QWSTDPAQIR RELCSLPATN TETHPAKDET FWKRKSRARK SLFQKNLMGR ENSBTAP00000006753/1-528 QWNTDSAQVK RELWGLQATS KEAHSVKDDA FWIRKSRARR SLFQKNPMGK bmy_20828T0/1-565 QWSTDPAQVK RQLWGLQATS KEAHLAKDET FWKRKSRARK SLFQKNPMGR ENSTTRP00000015197/1-386 QWSTDPAQVK RQLWGLQATS KEAHSTKDET FWKRKSRARK SLFQKNPMGR 451 500 ENSP00000400892/1-521 KVKSLDLSIT QQKWKQSVDR PELRRSLSQQ PQDTFDLEEV QSNSEEEQSQ ENSBTAP00000006753/1-528 KVKSLDLSII QQKWKQSQER TEMHRSLTEQ WQDTLDL-EV QSNSEEEESH bmy_20828T0/1-565 KVKSLDLSII QQQWKQGQER TELHRSLTQQ LQDTLDL-EV QSNSEEEESH ENSTTRP00000015197/1-386 KVKSLDLSTI QQKWKQGQER TELHRSLTQQ LQDTLDL-EV QSNSEEEESH 501 550 ENSP00000400892/1-521 SRWPSRPRHP HHHQTFAGKD S--------- ---------- ---------- ENSBTAP00000006753/1-528 --WPSRPGHH HLCQTSAGED SRSFHHNHST FS-------- ---------- bmy_20828T0/1-565 --WPSRSRNH HLYQTFAGKD SGTKQSFAQV LVVQQMSALH KKMPRCPAKQ ENSTTRP00000015197/1-386 --WPSRSRNH HLYQTFAGKD SRLLPPPQHV L--------- ---------- 551 600 ENSP00000400892/1-521 ---------- ---------- ---------- ---------- ENSBTAP00000006753/1-528 ---------- ---------- ---------- ---------- bmy_20828T0/1-565 LSEVAQHNIY PVCEVVISRG ERFHFIVNTA NSSGRRVRKD ENSTTRP00000015197/1-386 ---------- ---------- ---------- ----------