KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:21 2014 Check: 00 .. Name: ENSP00000297837/1-871 Len: 925 Check: 7256 Weight: 1.00 Name: ENSBTAP00000006765/1-864 Len: 925 Check: 2273 Weight: 1.00 Name: bmy_01813T0/1-840 Len: 925 Check: 8900 Weight: 1.00 Name: BACU017571/1-790 Len: 925 Check: 2569 Weight: 1.00 Name: ENSTTRP00000010286/1-866 Len: 925 Check: 1467 Weight: 1.00 // 1 50 ENSP00000297837/1-871 MGEGGLPPAF QLLLRACDQG DTETARRLLE PGAAEPAERG AEPEAGAEPA ENSBTAP00000006765/1-864 MGEGGLPPAF QLLLRACDQG DTETARRLLD PGAAEPAERG VEPEAGAEPA bmy_01813T0/1-840 MGEGGLPPAF QLLLRACDQG DTETARRLLE PGAAEPAERG AEPEAGAEPA BACU017571/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010286/1-866 MREGGLPPAF QKQLRA-DQG DKKKARRLKE P-EMEQAEHD AEPEAGAEPA 51 100 ENSP00000297837/1-871 GAEVAGPGAA AAGAVGAPVP VDCSDEAGNT ALQFAAAGGH EPLVRFLLRR ENSBTAP00000006765/1-864 GPEASGPGA- -AA--GAPVP VDCSDEAGNT ALQFAAAGGH EPLVRFLLRR bmy_01813T0/1-840 GPEASGPGAG AAA--GAPVP VDCSDEAGNT ALQFAAAGGH EQLVRFLLRR BACU017571/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010286/1-866 GPEASGPGKG -AA--GAPVP VDCSDEAGNT ALQLAAAGGQ EQQVRFLLRR 101 150 ENSP00000297837/1-871 GASVNSRNHY GWSALMQAAR FGHVSVAHLL LDHGADVNAQ NRLGASVLTV ENSBTAP00000006765/1-864 GASVNSRNHY GWSALMQAAR FGHVSVAHLL LDHGADVNAQ NRLGASVLTV bmy_01813T0/1-840 GASVNSRNHY GWSALMQAAR FGHVSVAHLL LDHGADVNAQ NRLGASVLTV BACU017571/1-790 ---------- -----MQAAR FGHVSVAHLL LDHGADVNAQ NRLGASVLTV ENSTTRP00000010286/1-866 GASVNSHNHY GWSALKQAAR FGHVSVAHLL LDHGADVNAQ NRLGASVLTV 151 200 ENSP00000297837/1-871 ASRGGHLGVV KLLLEAGAFV DHHHPSGEQL GLGGSRDEPL DITALMAAIQ ENSBTAP00000006765/1-864 ASRGGHLGVV KLLLEAGAFV DHHKPSGE-- --ADSGDELL DITALMAAIQ bmy_01813T0/1-840 ASRGGHLGVV KLLLEAGAFV DHHKPSGEQ- -AGDSRDELL DVTALMAAIQ BACU017571/1-790 ASRGGHLGVV KLLLEAGAFV DHHKPSGEQ- -AGDGRDELL DVTALMAAIQ ENSTTRP00000010286/1-866 ASRGGHLGVV KLLLEAGAFV DHHKPSGEQ- -AGDGRDELL DVTALMAAIQ 201 250 ENSP00000297837/1-871 HGHEAVVRLL MEWGADPNHA ARTVGWSPLM LAALTGRLGV AQQLVEKGAN ENSBTAP00000006765/1-864 HGHEAVVRLL MEWGADPNHE ARTVGWSPLM LSALIGKLGM AQQLVEKGAN bmy_01813T0/1-840 HGHEAVVRLL MEWGADPNHA AHTVGWSPLM LSALLGRLGT AQQLVEKGAN BACU017571/1-790 HGHEAVVRLL MEWGADPNHA AHTVGWSPLM LSALLGRLGT AQQLVEKGAN ENSTTRP00000010286/1-866 HGHEAVVRLL MEWGADPNHA ARTVGWSPLM LSALLGRLGT AQQLVEKGAN 251 300 ENSP00000297837/1-871 PDHLSVLEKT AFEVALDCKH RDLVDYLDPL TTVRPKTDEE KRRPDIFHAL ENSBTAP00000006765/1-864 PDHLSVLEKT AFEVALDRKH RDLADYLDPL TTVRPKTDEE KRRPDIFHAL bmy_01813T0/1-840 PDHLSVLEKT AFEVALDRKY RDLADYLDPL TTVRPKTDEE KRRPDIFHAL BACU017571/1-790 PDHLSVLEKT AFEVALDRKY RDLADYLDPL TTVRPKTDEE KRRPDIFHAL ENSTTRP00000010286/1-866 PDHLSVLEKT AFEVALDRKY RDLADYLDPL TTVRPKTDEE KRRPDIFHAL 301 350 ENSP00000297837/1-871 KMGNFQLVKE IADEDPSHVN LVNGDGATPL MLAAVTGQLA LVQLLVERHA ENSBTAP00000006765/1-864 KMGNFQLVKE IADEDPNHVN LVNGDGATPL MLAAVMGQLP LVQLLVERHA bmy_01813T0/1-840 KMGNFQLVKE IADEDPNHVN LVNGDGATPL MLAAVMGQLP LVQLLVERHA BACU017571/1-790 KMGNFQLVKE IADEDPNHVN LVNGDGATPL MLAAVMGQLS LVQLLVERHA ENSTTRP00000010286/1-866 KMGNFQLVKE IADEDPNHVN LVNGDGATPL MLAAVMGQLP LVQLLVERHA 351 400 ENSP00000297837/1-871 DVDKQDSVHG WTALMQATYH GNKEIVKYLL NQGADVTLRA KNGYTAFDLV ENSBTAP00000006765/1-864 DVDKQDSAHG WTALMQATYH GNKEIVKYLL NQGADVTLRA KNGYTAFDLV bmy_01813T0/1-840 DVDKQDSVHG WTALMQATYH GNKEIVKYLL NQGADVTLRA KNGYTAFDLV BACU017571/1-790 DVDKQDSVHG WTALMQATYH GNKEIVKYLL NQGADVTLRA KNGYTAFDLV ENSTTRP00000010286/1-866 DVDKQDGVHG WTALMQATYH GNKEIVKYLL NQGADVTLRA KNGYTAFDLV 401 450 ENSP00000297837/1-871 MLLNDPDTEL VRLLASVCMQ VNKDKGRPSH QPPLPHSKVR QPWSIPVLPD ENSBTAP00000006765/1-864 MLLSDPDTEL VRLLASVCMQ VNKDKGRPSH PPPLPHSKVR QPWSVPVLPD bmy_01813T0/1-840 MLLSDPDTEL VRLLASVCMQ VNKDKGRPSH SPPLPHSKVR QPWSVPVLPD BACU017571/1-790 MLLSDPDTEL VRLLASVCMQ VNKDKGRPSH SPPPPHSKVR QPWSVPVLPD ENSTTRP00000010286/1-866 MLLSDPDTEL VRLLASVCMQ VNKDKGRPSH SPPPPHSKVR QPWSVPVLPD 451 500 ENSP00000297837/1-871 DKGGLKSWWN RMSNRFRKLK LMQTLPRGLS SNQPLPFSDE PEPALDSTMR ENSBTAP00000006765/1-864 DKGGLKSWWN RMSNRFRKLK LMQTLPRGLS SNQPLPFCDE PEPALDSTMR bmy_01813T0/1-840 DKGGLKSWWN RMSNRFRKLK LMQTLPRGLS SNQPLPFCDE PEPALDSTMR BACU017571/1-790 DKGGLKSWWN RMSNRFRKLK LMQTLPRGLS SNQPLPFCDE PEPALDSTMR ENSTTRP00000010286/1-866 DKGGLKSWWN RMSNRFRKLK LMQTLPRGLS SNQPLPFCDE PEPALDSTMR 501 550 ENSP00000297837/1-871 AAPQDKTSRS ALPDAAPVTK DNGPGSTRGE KEDTLLTTML RNGAPLTRLP ENSBTAP00000006765/1-864 AAPLDKTSRS GLPDVAPMTK DNGTGSTRGE KEDVLLTTML RNGAPFTRLP bmy_01813T0/1-840 APPPDKTSRS GLPDVTPTTK DNGPGSTRGE KEDVLLTTML RNGAPFTRLP BACU017571/1-790 APPPDKTSRS GLPDVTPTTK DNGPGSTRGE KEDVLLTTML RNGAPFTRLP ENSTTRP00000010286/1-866 APPPDKTSRS GLPDVTPTTK DNGPGSTRGE KEDVLLTTML RNGAPFTRLP 551 600 ENSP00000297837/1-871 SDKLKAVIPP FLPPSSFELW SSDRSRTRHN GKADPMKTAL PQRASRGHPV ENSBTAP00000006765/1-864 SDKLKAVIPP FLPPSSFELW SSDHSRTCHN GKADPMKTVL PQRAGRGHPA bmy_01813T0/1-840 SDKLKAVIPP FLPPSSFELW SSDRSRTCHN RKADPMKTVR SQRASRGQPV BACU017571/1-790 SDKLKAVIPP FLPPSSFELW SSDRSRTCHN GKADPMKTVR SQRASRGQPV ENSTTRP00000010286/1-866 SDKLKAVIPP FLPPSSFELW SSDRSRTCHN GKADPMKTVR PQRASRGQPV 601 650 ENSP00000297837/1-871 GGGGTDTTPV RPVKFPSLPR SPASSANSGN FNHSPHSSGG SSGV-GVSRH ENSBTAP00000006765/1-864 GGGSTDSTLV RPVKFPSLSR SPASPANSGN FNHSPHSSGG SSGGGGMSRH bmy_01813T0/1-840 GGGSTDTTPV RPVKFPSLSR SPASPANSGN FNHSPHSSGG SSGVGGMSRH BACU017571/1-790 GGGSTDTTPV RPVKFPSLSR SPASPANSGN FNHSPHSSGG SSGVGGMNRH ENSTTRP00000010286/1-866 GGGSTDTTPV RPVKFPSLSR SPASPANSGN FNHSPHSSGG SSGVGGMSRH 651 700 ENSP00000297837/1-871 GGELLNRSGG SIDNVLSQIA AQRKKAAGLL EQKPSHRSSP VGPAPGSSPS ENSBTAP00000006765/1-864 GGELHNRSGG SVDSVLSQIA AQRKKAAGLS EQKPSHRSSP VGPAPSSSPS bmy_01813T0/1-840 GGELHNRSGG SIDSVLSQIA AQRKKAAGLS EQKPSHRSSP VGPAPGSSPS BACU017571/1-790 GGELHNRSGG SIDSVLSQIA AQRKKAAGLS EQKPSHRSSP VGPAPGSSPS ENSTTRP00000010286/1-866 GGELHNRSGG SIDSVLSQIA AQRKKAAGLS EQKPSHRSSP VGPAPGSSPS 701 750 ENSP00000297837/1-871 ELPASPAGGS APVGK-KLET SKRPPSGTST TSKSTSPTLT PSPSPKGHTA ENSBTAP00000006765/1-864 ELPVSPAGGS VPGGK-KLET SKRPPSGTST TSKSTSPTLT PSPSPKGHAA bmy_01813T0/1-840 ELLVSSAGGS VPGGKQKLET SKRPPSGTST TSKSTSPTLT PSPSPKGHAA BACU017571/1-790 ELLVSSAGGS VPGGKVLVLF PSAPLTLT-- ---------- ------GHAA ENSTTRP00000010286/1-866 ELLVSSAGGS VPGGKQKLET SKRPPSGTST TSKSTSPTLT PSPSPKAQAA 751 800 ENSP00000297837/1-871 ESSVSSSSSH RQSKSSGGSS SGTITDEDEL TGILKKLSLE KYQPIFEEQE ENSBTAP00000006765/1-864 ESSVSSSSSH RQSKGSGGSS SGTITDEDEL TGILKKLSLE KYQPIFEEQE bmy_01813T0/1-840 ESSVSSSSSH RQSKSSGGSS SGTITDEVCI SLVLG----- ---------- BACU017571/1-790 ESSVSSSSSH RQSKSSGGSS SGTITDEDEL TGILKKLSLE KYQPIFEEQE ENSTTRP00000010286/1-866 ESSVSSSSSH RQSKSSGGSS SGTITDEDEL TGILKKLSLE KYQPIFEEQE 801 850 ENSP00000297837/1-871 ---------- --VDMEAFLT LTDGDLKELG IKTDGSRQQI LAAISELNAG ENSBTAP00000006765/1-864 ---------- --VDMEAFLT LTDGDLKELG IKTDGSRQQI LAAISELNAG bmy_01813T0/1-840 -------GGK NMVDMEAFLT LTDGDLKELG IKTDGSRQQI LAAISELNAG BACU017571/1-790 SASLLSLGGG NMVDMEAFLT LTDGDLKELG IKTDGSRQQI LAAISELNAG ENSTTRP00000010286/1-866 ---------- --VDMEAFLT LTDGDLKELG IKTDGSRQQI LAAISELNAG 851 900 ENSP00000297837/1-871 KGRERQILQE TIHNFHSSFE SSASNTRAPG NSPCA----- ---------- ENSBTAP00000006765/1-864 KGRERQILQE TIHNFHSSFE SSASNTRAPG NNPCT----- ---------- bmy_01813T0/1-840 K-----VLFS IFFFFFPVSN S--------- ---------- ---------- BACU017571/1-790 KGRERQILQE TIHNFHSSFE SSASNTRAPG NNPYDGFLKR FRVGLHTRST ENSTTRP00000010286/1-866 KGRERQILQE TIHNFHSSFE SSASNTRAPG NNPCT----- ---------- 901 950 ENSP00000297837/1-871 ---------- ---------- ----- ENSBTAP00000006765/1-864 ---------- ---------- ----- bmy_01813T0/1-840 ---------- ---------- ----- BACU017571/1-790 EGPQPQRRPP LPTSAHFRHQ PLRFR ENSTTRP00000010286/1-866 ---------- ---------- -----