KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:23 2014 Check: 00 .. Name: ENSTTRP00000002756/1-1485 Len: 1499 Check: 6901 Weight: 1.00 Name: ENSP00000335320/1-1499 Len: 1499 Check: 5444 Weight: 1.00 Name: ENSBTAP00000006774/1-1495 Len: 1499 Check: 957 Weight: 1.00 Name: bmy_03260T0/1-1496 Len: 1499 Check: 282 Weight: 1.00 Name: BACU017327/1-1459 Len: 1499 Check: 6895 Weight: 1.00 // 1 50 ENSTTRP00000002756/1-1485 ---------L PHPRRREAPG SPPLSPRGHC PPAPAKPMHP ENKLTNHGKT ENSP00000335320/1-1499 MRILANKTRL PHPRRREAPG SPPLSPRGHC PPAPAKPMHP ENKLTNHGKT ENSBTAP00000006774/1-1495 MRILANKTRL PHPRRREAPG SPPLSPRGHC PPAPAKPMHP ENKLTNHGKT bmy_03260T0/1-1496 MRILANKTRL PHPRRREAPG SPPLSPRGHC PPAPAKPMHP ENKLTNHGKT BACU017327/1-1459 ---------- ---------- ---------- -------MHP ENKLTNHGKT 51 100 ENSTTRP00000002756/1-1485 GNGGAQSQHQ NVNQGPTCNL GSKGVGAGNH GAKANQISPS NSSLKNPQAG ENSP00000335320/1-1499 GNGGAQSQHQ NVNQGPTCNV GSKGVGAGNH GAKANQISPS NSSLKNPQAG ENSBTAP00000006774/1-1495 GNGGAQSQHQ NVNQGPTCNL GSKGVGAGNH GAKANQISPS NSSLKNPQAG bmy_03260T0/1-1496 GNGGAQSQHQ NVNQGPTCNL GSKGVGAGNH GAKANQISPS NSSLKNPQAG BACU017327/1-1459 GNGGAQSQHQ NVNQGPTCNL GSKGVGAGNH GAKANQISPS NSSLKNPQAG 101 150 ENSTTRP00000002756/1-1485 VPPFSSLKGK VKRERSVSVD SGEQREAGTP SLDAEAKEVA PRSKRRCVLE ENSP00000335320/1-1499 VPPFSSLKGK VKRDRSVSVD SGEQREAGTP SLDSEAKEVA PRSKRRCVLE ENSBTAP00000006774/1-1495 VPPFSSLKGK VKRERSVSVD SGEQREAGTP SLDSEAKEVA PRSKRRCVLE bmy_03260T0/1-1496 VPPFSSLKGK VKRERSVSVD SGEQREAGTP SLDSEAKEVA PRSKRRCVLE BACU017327/1-1459 VPPFSSLKGK VKRERSVSVD SGEQREAGTP SLDSEAKEVA PRSKRRCVLE 151 200 ENSTTRP00000002756/1-1485 RKQPYSGDEW CSGPDSEEDD KPIGATHNCN VADPAMAAPQ LGPGQAAQLP ENSP00000335320/1-1499 RKQPYSGDEW CSGPDSEEDD KPIGATHNCN VADPAMAAPQ LGPGQTTQLP ENSBTAP00000006774/1-1495 RKQPYSGDEW CSGPDSEEDD KPLGAAHNCN VADPAMAAPQ LGPGQAPQLP bmy_03260T0/1-1496 RKQPYSGDEW CSGPDSEEDD KPIGATHNCN VADPAMAAPQ LGPGQAAQLP BACU017327/1-1459 RKQPYSGDEW CSGPDSEEDD KPIGATHNCN VADPAMAAPQ LGPGQAAQLP 201 250 ENSTTRP00000002756/1-1485 LSESSAPGPP HGPPPGLRPD AP--GGGGGG VPGKPPSQFV YVFTTHLANT ENSP00000335320/1-1499 LSESSVPGAP HGPPPGLRPD APGGGGGGGG VPGKPPSQFV YVFTTHLANT ENSBTAP00000006774/1-1495 LSESSAPGPP HGAPPGLRPD AP--GGGGGG VPGKPPSQFV YVFTTHLANT bmy_03260T0/1-1496 LSESSAPGPP HGPPPGLRPD AP--GGGGGG VPGKPPSQFV YVFTTHLANT BACU017327/1-1459 LSESSAPGPP HGPPPGLRPD AP--GGGGGG VPGKPPSQFV YVFTTHLANT 251 300 ENSTTRP00000002756/1-1485 AAEAVLQGRA DSILAYHQQN VPRAKLDQAP KVPPTPEPLP LSTPSTGTPQ ENSP00000335320/1-1499 AAEAVLQGRA DSILAYHQQN VPRAKLDQAP KVPPTPEPLP LSTPSAGTPQ ENSBTAP00000006774/1-1495 AAEAVLQGRA DSILAYHQQN VPRAKLDQAP KVPPTPEPLP LSTPSAGTPQ bmy_03260T0/1-1496 AAEAVLQGRA DSILAYHQQN VPRAKLDQAP KVPPTPEPLP LSTPSTGTPQ BACU017327/1-1459 AAEAVLQGRA DSILAYHQQN VPRAKLDQAP KVPPTPEPLP LSTPSTGTPQ 301 350 ENSTTRP00000002756/1-1485 SQPPPLPPPP PPAPGSAPAA LPSEGPPEDT SQDLTPNSVG AASTGGGTGG ENSP00000335320/1-1499 SQPPPLPPPP PPAPGSAPPA LPPEGPPEDS SQDLAPNSVG AASTGGGTGG ENSBTAP00000006774/1-1495 TQPPPLPPPP PPAPGSAPPA LPSEGPPEDA NQDLTPNSVG AASTGGGTGG bmy_03260T0/1-1496 SQPPPLPPPP PPAPGSAPPA LPSEGPPEDT NQDLTPNSVG AASTGGGTGG BACU017327/1-1459 SQPPPLPPPP PPAPGSAPPA LPSEGPPEDT NQDLTPNSVG AASTGGGTGG 351 400 ENSTTRP00000002756/1-1485 THPNTPTAST ANNPLPPGGE PSSAPGPALL GEAPT-GNGQ RSLVGSEGLS ENSP00000335320/1-1499 THPNTPTATT ANNPLPPGGD PSSAPGPALL GEAAAPGNGQ RSLVGSEGLS ENSBTAP00000006774/1-1495 THPNTPTAST TNNPLPPGGD PSSAPGPALL GEAPT-GNGQ RSLVGSEGLS bmy_03260T0/1-1496 THPNTPTAST ANNPLPPGGD PSSAPGPALL GEAAT-GNGQ RSLAGSEGLS BACU017327/1-1459 THPNTPTAST ANNPLPPGGD PSSAPGPALL GEAAS-GNAQ RSLVGSEGLS 401 450 ENSTTRP00000002756/1-1485 KEQLEHRERS LQTLRDIERL LLRSGETEPF LKGPPGGAGE GGPPAQAPPA ENSP00000335320/1-1499 KEQLEHRERS LQTLRDIERL LLRSGETEPF LKGPPGGAGE GGPPAQAPPP ENSBTAP00000006774/1-1495 KEQLEHRERS LQTLRDIERL LLRSGETEPF LKGPPGGAGE GGPPAPAPPA bmy_03260T0/1-1496 KEQLEHRERS LQTLRDIERL LLRSGEAEPF LKGPPGGAGD GGPPAQAPPA BACU017327/1-1459 KEQLEHRERS LQTLRDIERL LLRSGETEPF LKGPPGGAGE GGPPAQAPPA 451 500 ENSTTRP00000002756/1-1485 PQQPPTAPTS GLKKYEEPLQ SMISQTQSLG GPPLEHEVPG HPPGGDMGQQ ENSP00000335320/1-1499 PQQPPTAPPS GLKKYEEPLQ SMISQTQSLG GPPLEHEVPG HPPGGDMGQQ ENSBTAP00000006774/1-1495 PQQPPTAPPS GLKKYEEPLQ SMISQTQSLG GPPLEHEVPG HPPGGDVG-Q bmy_03260T0/1-1496 PQQPPTAPAS GLKKYEEPLQ SMISQTQSLG GPPLEHEVPG HPPGGDMGQQ BACU017327/1-1459 PQQPPTAPAS GLKKYEEPLQ SMISQTQSLG GPPLEHEVPG HPPGGDMGQQ 501 550 ENSTTRP00000002756/1-1485 MNMMMQRLGQ DSLTPEQVAW RKLQEEYYEE KRRKEEQIGL HGGRPLQDMM ENSP00000335320/1-1499 MNMMIQRLGQ DSLTPEQVAW RKLQEEYYEE KRRKEEQIGL HGSRPLQDMM ENSBTAP00000006774/1-1495 MNVMMQRLGQ DSLTPEQVAW RKLQEEYYEE KRRKEEQIGL HGGRSLQDMM bmy_03260T0/1-1496 MNMMMQRLGQ DSLTPEQVAW RKLQEEYYEE KRRKEEQIGL HGGRPLQDMM BACU017327/1-1459 MNMMMQRLGQ DSLTPEQVAW RKLQEEYYEE KRRKEEQIGL HGGRPLQDMM 551 600 ENSTTRP00000002756/1-1485 GMGGMMVRGP PPPYHSKPGD QWPPGMGAQL RGPMDVQDPM QLRGGPPFPG ENSP00000335320/1-1499 GMGGMMVRGP PPPYHSKPGD QWPPGMGAQL RGPMDVQDPM QLRGGPPFPG ENSBTAP00000006774/1-1495 GMGGMMVRGP PPPYHSKPGD QWPPGMGAQL RGPMDVQDPM QVRAGPPFPG bmy_03260T0/1-1496 GMGGMMVRGP PPPYHSKPGD QWPPGMGAQL RGPMDVQDPM QLRGGPPFPG BACU017327/1-1459 GMGGMMVRGP PPPYHSKPGD QWPPGMGAQL RGPMDVQDPM QLRGGPPFPG 601 650 ENSTTRP00000002756/1-1485 PRFPGNQMQR VSGFGGIQGM PMEVPMNAMQ RPVRPGMGWT EDLPPMGGPG ENSP00000335320/1-1499 PRFPGNQIQR VPGFGGMQSM PMEVPMNAMQ RPVRPGMGWT EDLPPMGGPS ENSBTAP00000006774/1-1495 PRFPGNQMQR MPGFGGMQGM PMEVPMNAMQ RPVRPGMGWT EDLPPMGGPG bmy_03260T0/1-1496 PRFPGNQMQR VPGFGGMQGM PMEVPMNAMQ RPVRPGMGWT EDLPPMGGPG BACU017327/1-1459 PRFPGNQMQR VPGFGGMQGM PMEVPMNAMQ RPVRPGMGWT EDLPPMGGPG 651 700 ENSTTRP00000002756/1-1485 NFAQNAVPYP GGQGEAERFM TPRVREELLR HQLLEKRSMG MQRPLGMAGS ENSP00000335320/1-1499 NFAQNTMPYP GGQGEAERFM TPRVREELLR HQLLEKRSMG MQRPLGMAGS ENSBTAP00000006774/1-1495 NFAQNAVPYP GGQGEAERFM TPRVREELLR HQLLEKRSMG MQRPLGMAGS bmy_03260T0/1-1496 NFAQNAVPYP GGQGEAERFM TPRVREELLR HQLLEKRSMG MQRPLGMAGS BACU017327/1-1459 NFAQNAVPYP GGQGEAERFM TPRVREELLR HQLLEKRSMG MQRPLGIAGS 701 750 ENSTTRP00000002756/1-1485 GMGQGMEVER MMQAHRQMDP AMFPGQIAGG EGLAGTPMGM EFGGGRGLLS ENSP00000335320/1-1499 GMGQSMEMER MMQAHRQMDP AMFPGQMAGG EGLAGTPMGM EFGGGRGLLS ENSBTAP00000006774/1-1495 GMGQGMEVER MMQAHRQMDP AMFPGQMAGG EGLAGTPMGM EFAGGRGLLS bmy_03260T0/1-1496 GMGQGMEVER MMQAHRQMDP AMFPGQIAGG EGLAGTPMGM EFGGGRGLLS BACU017327/1-1459 GMGQGMEVER MMQAHRQMDP AMFPGQIAGG EGLAGTPMGM EFGGGRGLLS 751 800 ENSTTRP00000002756/1-1485 PPMGQSGLRE VDPPMGPGNL NMNMNVNMNM NMNLNVQMTP QQQMLMSQKM ENSP00000335320/1-1499 PPMGQSGLRE VDPPMGPGNL NMNMNVNMNM NMNLNVQMTP QQQMLMSQKM ENSBTAP00000006774/1-1495 PPMGQSGLRE VDPPMGPGNL NMNMNVNMNM NMNLNVQMTP QQQMLMSQKM bmy_03260T0/1-1496 PPMGQSGLRE VDPPMGPGNL NMNMNVNMNM NMNLNVQMTP QQQMLMSQKM BACU017327/1-1459 PPMGQSGLRE VDPPMGPGNL NMNMNVNMNM NMNLNVQMTP QQQMLMSQKM 801 850 ENSTTRP00000002756/1-1485 RGPGDMMGPQ GLSPEEMARV RAQSGSGMMG GPQKMLMPSQ FPSQGQQGFS ENSP00000335320/1-1499 RGPGDLMGPQ GLSPEEMARV RAQNSSGVMG GPQKMLMPSQ FPNQGQQGFS ENSBTAP00000006774/1-1495 RGPGDMMGPQ GLSPEEMARV RAQNSGGMMG GPQKMLMPSQ FPSQGQQGFS bmy_03260T0/1-1496 RGPGDMMGPQ GLSPEEMARV RAQNSSGMMG GPQKMLMPSQ FPSQGQQGFS BACU017327/1-1459 RGPGDMMGPQ GLSPEEMARV RAQNSSGMMG GPQKMLMPSQ FPSQGQQGFS 851 900 ENSTTRP00000002756/1-1485 GGQGPYQAMP QEMGNTQDMF SPDQSSMPMA NVGTTRLSHM PLPPASNPPG ENSP00000335320/1-1499 GGQGPYQAMS QDMGNTQDMF SPDQSSMPMS NVGTTRLSHM PLPPASNPPG ENSBTAP00000006774/1-1495 GGQGPYQAMP QDMGNTQDMF SPDQSSMPMG NVGTTRLSHM PLPPVSNPPG bmy_03260T0/1-1496 GGQGPYQAMP QEMGNTQDMF SPDQSSMPMA NVGTTRLSHM PLPPASNPPG BACU017327/1-1459 GGQGPYQAMP QEMGNTQDMF SPDQSSMPMA NVGTTRLSHM PLPPASNPPG 901 950 ENSTTRP00000002756/1-1485 SVHSAPNRGL GRRPSDLTIS INQMGSPGMG HLKSPTLSQV HSPLVTSPSA ENSP00000335320/1-1499 TVHSAPNRGL GRRPSDLTIS INQMGSPGMG HLKSPTLSQV HSPLVTSPSA ENSBTAP00000006774/1-1495 SVHSAPNRGL GRRPSDLTIS INQMGSPGMG HLKSPTLSQV HSPMVTSPSA bmy_03260T0/1-1496 SVHSAPNRGL GRRPSDLTIS INQMGSPGMG HLKSPTLSQV HSPLVTSPSA BACU017327/1-1459 SVHSAPNRGL GRRPSDLTIS INQMGSPGMG HLKSPTLSQV HSPLVTSPSA 951 1000 ENSTTRP00000002756/1-1485 NLKSPQTPSQ MVPLPSANPP GPLKSPQVLS SSLSVRSPTG SPSRLKSPSM ENSP00000335320/1-1499 NLKSPQTPSQ MVPLPSANPP GPLKSPQVLG SSLSVRSPTG SPSRLKSPSM ENSBTAP00000006774/1-1495 NLKSPQTPSQ MVPLPSANPP GPLKSPQVLS SSLSVRSPTG SPSRLKSPSM bmy_03260T0/1-1496 NLKSPQTPSQ MVPLPSANPP GPLKSPQVLS SSLSVRSPTG SPSRLKSPSM BACU017327/1-1459 NLKSPQTPSQ MVPLSSANPP GPLKSPQVLS SSLSVRSPTG SPSRLKSPSM 1001 1050 ENSTTRP00000002756/1-1485 AVPSPGWVAS PKTAMPSPGV PQNKQPPLNM NSSSTLGNVE QSALPPSGPR ENSP00000335320/1-1499 AVPSPGWVAS PKTAMPSPGV SQNKQPPLNM NSSTTLSNME QGTLPPSGPR ENSBTAP00000006774/1-1495 AVPSPGWVAS PKTAMPSPGV PQNKQPPLNM SSSTTLGNME QGALPPSGPR bmy_03260T0/1-1496 AVPSPGWVAS PKTAMPSPGV PQNKQPPLNM NSSSTLGNME QSALPPSGPR BACU017327/1-1459 AVPSPGWVAS PKTAMPSPGV PQNKQPPLNM NSSSTLGNME QSALPPSGPR 1051 1100 ENSTTRP00000002756/1-1485 SSSSAPPANP PSGLMNPSLP FTSSPDPTPS QNPLSLMMSQ MSKYAMPSST ENSP00000335320/1-1499 SSSSAPPANP PSGLMNPSLP FTSSPDPTPS QNPLSLMMTQ MSKYAMPSST ENSBTAP00000006774/1-1495 SSSSAPPANP PSGLGNPSLP FTSSPDPTPS QNPLSLMMSQ MSKYAMPSST bmy_03260T0/1-1496 SNSSAPPANP PSGLMNPSLP FTSSPDPTPS QNPLSLMMSQ MSKYAMPSST BACU017327/1-1459 SNSSAPPANP PSGLMNPSLP FTSSPDPTPS QNPLSLMMSQ MSKYAMPSST 1101 1150 ENSTTRP00000002756/1-1485 PLYHNAIKTI ATSDDELLPD RPLLPPPPPP QGSGPGISNN QPTQMHLNSA ENSP00000335320/1-1499 PLYHNAIKTI ATSDDELLPD RPLLPPPPPP QGSGPGISNS QPSQMHLNSA ENSBTAP00000006774/1-1495 PLYHNAIKTI ATSDDELLPD RPLLPPPAPP QGSGPGISNN QPNQMHLNSA bmy_03260T0/1-1496 PLYHNAIKTI ATSDDELLPD RPLLPPPPPP QGSGPGISNN QPTQMHLNSA BACU017327/1-1459 PLYHNAIKTI ATSDDELLPD RPLLPPPPPP QGSGPGISNN QPTQMHLNSA 1151 1200 ENSTTRP00000002756/1-1485 AAQSPMGMNL PGQQPLSHDP PPPMLPSPTP LGSNIPLHPN AQGAGGPPQN ENSP00000335320/1-1499 AAQSPMGMNL PGQQPLSHEP PPAMLPSPTP LGSNIPLHPN AQGTGGPPQN ENSBTAP00000006774/1-1495 AAQSPMGMNL PGQQPLSHEP PPAMLPSPTP LGSNIPLHPN AQGTGGPPQN bmy_03260T0/1-1496 AAQSPMGMNL PGQQPLSHDP PPTMLPSPTP LGSNIPLHPN AQGTGGPPQN BACU017327/1-1459 AAQSPMGMNL PGQQPLSHDP PPTMLPSPTP LGSNIPLHPN AQGTGGPPQN 1201 1250 ENSTTRP00000002756/1-1485 STMMAPGGPD SLNAPCGPVP SSSQMLPFPP RLQQPHGAMA PSGGGGGGPG ENSP00000335320/1-1499 SMMMAPGGPD SLNAPCGPVP SSSQMMPFPP RLQQPHGAMA PTGGGGGGPG ENSBTAP00000006774/1-1495 SMMMAPGGPD SLSAPCGPVP SSSQMMPFPP RLQQPHGAMT PGGGGGGGPG bmy_03260T0/1-1496 SMMMAPGGPD SLNAPCGPVP NSSQMLPFPP RLQQPHGAMA PSGGGGGGPG BACU017327/1-1459 SMMMAPGGPD SLNAPCGPVP NSSQMLPFPP RLQQPHGAMA PSGGGGGGPG 1251 1300 ENSTTRP00000002756/1-1485 LQQHYPSGMA LPPEDLPSQP PGPLPPQQHL MGKSMAGRMG DAYPPGVLPG ENSP00000335320/1-1499 LQQHYPSGMA LPPEDLPNQP PGPMPPQQHL MGKAMAGRMG DAYPPGVLPG ENSBTAP00000006774/1-1495 LQHHYPSGMA LPPEDLPSQP PGPMPPQQHL MGKSMASRMG DAYPPGVLPG bmy_03260T0/1-1496 LQQHYPSGMA LPPEDLPSQP PGPLPPQQHL MGKSMAGRMG DAYPPGVLPG BACU017327/1-1459 LQQPCPSGMA LPPEDLPSQP PGPLPPQQHL MGKSMAGRMG DAYPPGVLPG 1301 1350 ENSTTRP00000002756/1-1485 VASVLNDPEL SEVIRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000335320/1-1499 VASVLNDPEL SEVIRPTPTG IPEFDLSRII PSEKPSSTLQ YFPKSENQPP ENSBTAP00000006774/1-1495 VASVLNDPEL SEVIRPTPTG IPEFDLSRII PSEKPSSTLQ YFPKSESHPP bmy_03260T0/1-1496 VASVLNDPEL SEVIRPTPTG IPEFDLSRII PSEKPSSTLQ YFPKSENQPP BACU017327/1-1459 VASVLNDPEL SEVIRPTPTG IPEFDLSRII PSEKPSSTLQ YFPKSENQPP 1351 1400 ENSTTRP00000002756/1-1485 XXQPPNLHFM NLQ-MMAEQ- PSRPPNLPGQ QGVQRGLNMS MCHPGQMSLL ENSP00000335320/1-1499 KAQPPNLHLM NLQNMMAEQT PSRPPNLPGQ QGVQRGLNMS MCHPGQMSLL ENSBTAP00000006774/1-1495 KAQPPNLHLM NLQNMMAEQT PSRPPNLPGQ QGVQRGLNMS MCHPGQMSLL bmy_03260T0/1-1496 KAQPPNLHLM NLQNMMAEQT PSRPPNLPGQ QGVPRGLNMS MCHPGQMSLL BACU017327/1-1459 KAQPPNLHLM NLQNMMAEQT PSRPPNLPGQ QGVQRGLNMS MCHPGQMSLL 1401 1450 ENSTTRP00000002756/1-1485 GRTGVPSQQG MVPHGLHQGV MAPPQGLMTQ QNFMLMKQRG VGGEVYSQPP ENSP00000335320/1-1499 GRTGVPPQQG MVPHGLHQGV MSPPQGLMTQ QNFMLMKQRG VGGEVYSQPP ENSBTAP00000006774/1-1495 GRTGMPPQQG MVPHGLHQGV MSPPQGLMTQ QNFMLMKQRG VGGEVYSQPP bmy_03260T0/1-1496 GRTGVPSQQG MVPHGLHQGV MAPPQGLMTQ QNFMLMKQRG VGGEVYSQPP BACU017327/1-1459 GRTGVPSQQG MVPHGLHQGV MAPPQGLMTQ QNFMLMKQRG VGGEVYSQPP 1451 1500 ENSTTRP00000002756/1-1485 HMLPPQGSLM GPPPQQNLMV SHPLRQRSVS LDSQMGYLPA PGGMANLPF ENSP00000335320/1-1499 HMLSPQGSLM GPPPQQNLMV SHPLRQRSVS LDSQMGYLPA PGGMANLPF ENSBTAP00000006774/1-1495 HMLSPQGSLL GPPPQQNLMV SHPLRQRSVS LDNQMGYLPA PGGMANLPF bmy_03260T0/1-1496 HVLPPQGSLM GPPPQQNLMV SHPLRQRSVS LDSQMGYLPA PGGMANLPF BACU017327/1-1459 HMLPPQGSLM GPPPQQNLMV SHPLRQRSVS LDSQMGYLPA PGGMANLPF