KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:24 2014 Check: 00 .. Name: ENSBTAP00000006775/1-845 Len: 859 Check: 5740 Weight: 1.00 Name: ENSP00000371833/1-849 Len: 859 Check: 6983 Weight: 1.00 Name: bmy_15850T0/1-827 Len: 859 Check: 2435 Weight: 1.00 Name: ENSTTRP00000002397/1-848 Len: 859 Check: 7870 Weight: 1.00 // 1 50 ENSBTAP00000006775/1-845 MPWVLWPRWL TSKGLP---L LGAVQLQKRE KRGPQCEQWR RETHPFYDLQ ENSP00000371833/1-849 MLWALWPRWL ADKMLP---L LGAVLLQKRE KRGPLWRHWR RETYPYYDLQ bmy_15850T0/1-827 YLSDLSQQPG QPEERRQGFL PGAGLLGHAL GTLAQVADRP GAAPRGCAVA ENSTTRP00000002397/1-848 MLWALWPRWL TGKELS---L VGAVLLQKRQ KREPQWRRWW RETHPYYDLQ 51 100 ENSBTAP00000006775/1-845 VKVLRAKNIQ GTDLLSKADC YVQLWLPSAS PSPSRTRVVA NCSDPEWNET ENSP00000371833/1-849 VKVLRATNIR GTDLLSKADC YVQLWLPTAS PSPAQTRIVA NCSDPEWNET bmy_15850T0/1-827 AEETEDGNSA EAVAVSKADC YVQLWLHTAS PSPAQTRVVA NCRDPEWNET ENSTTRP00000002397/1-848 VKVLRARNIR GADLLSKADC YVQLCLHTAS PSPAQTRVVA NCRDPEWNET 101 150 ENSBTAP00000006775/1-845 FHYRIHGAVK NVLELTLYDK DILDNDQLSL LLFDLRSLKP GQPHSHTFPL ENSP00000371833/1-849 FHYQIHGAVK NVLELTLYDK DILGSDQLSL LLFDLRSLKC GQPHKHTFPL bmy_15850T0/1-827 FHYRVHGAVK NVLELTLYDK DVLDSDQLSL LLFDLRNLKP HQLHRHTFSL ENSTTRP00000002397/1-848 FHYRVHGAVK NVLQLTLYDK DVLYSDQLSL LLFDLTSLKP RARRR---TL 151 200 ENSBTAP00000006775/1-845 SQQESHELQV EFVLEKSQVP APEVITNGVL VAQPCLRIQG TLRGDGTAPH ENSP00000371833/1-849 NHQDSQELQV EFVLEKSQVP ASEVITNGVL VAHPCLRIQG TLRGDGTAPR bmy_15850T0/1-827 SHQDSQELQV EFVLEDSQVP ASEVITNGVL VAQPCLRIQG TLSGDGTARH ENSTTRP00000002397/1-848 LSRDSQELQV EFLLEDSQVP ASEVITNGVL VAQPCLRIQG TLRGDGTAPH 201 250 ENSBTAP00000006775/1-845 LGHGP----- RQIQLAVPGA YEKPQLLPLQ PPTEMGVPAM FTFHVNPVLS ENSP00000371833/1-849 EEYGS----- RQLQLAVPGA YEKPQLLPLQ PPTEPGLPPT FTFHVNPVLS bmy_15850T0/1-827 QEYGPLLPGS RQIWLAVPGA HEKPQLLPLQ PPLQAGLPAT FTFHANPVLS ENSTTRP00000002397/1-848 QEYGS----- SQIRLAVPGA YEKPQLLPLQ PPLEAGLPAT FTFHVNPVLS 251 300 ENSBTAP00000006775/1-845 SKLEVGLGEK L-MVQGDPRA KEESQTSKP- --GILLSSLA LGQEQQCVVA ENSP00000371833/1-849 SRLHVELMEL LAAVQSGPSA ELEAQTSKLG EGGILLSSLP LGQEEQCSVA bmy_15850T0/1-827 SRLEVELGEK LTVLQNGPSA ELEVQTSKLG EGGILLSSLA LGQEQQHVVA ENSTTRP00000002397/1-848 SRLEVELGEK LTALQSGPSA ELEVQTSKLG EAGILLSSLA LGQEQQHVVA 301 350 ENSBTAP00000006775/1-845 LGEGQEVAMS VKAEMSSGDL DLRLGFDLCD GEKEFLEKRK RLVSKALQQA ENSP00000371833/1-849 LGEGQEVALS MKVEMSSGDL DLRLGFDLSD GEQEFLDRRK QVVSKALQQV bmy_15850T0/1-827 LGEGQEVAMS VKAEVSSGDL DLRLGFDLCD GEQEFLDKRK HVVSKALQQV ENSTTRP00000002397/1-848 LGEGQEVAMS VKAEVSSGDL DLRLGFDLCD GEQEFLDKRK HVVSKALQQV 351 400 ENSBTAP00000006775/1-845 LGLSHAPDSS --QVPVVAVL GSGGGTRAMS SLYGSLAGLQ ELGLLDTVTY ENSP00000371833/1-849 LGLSEALDSG --QVPVVAVL GSGGGTRAMS SLYGSLAGLQ ELGLLDTVTY bmy_15850T0/1-827 LGLSQAPDSN ---------- ---------- ---------Q ELGVLDTVTY ENSTTRP00000002397/1-848 LGLSQAPDSN QAQVPVVAVL GSGGGTRAMS SLYGSLAGLQ ELGVLDTVTY 401 450 ENSBTAP00000006775/1-845 LSGVSGSTWC ISTLYQDPAW SQVALQGPIE RAQARVCSSK MGAMSTERLQ ENSP00000371833/1-849 LSGVSGSTWC ISTLYRDPAW SQVALQGPIE RAQVHVCSSK MGALSTERLQ bmy_15850T0/1-827 LSGVSGSTWC ISTLYKDPAW SQVALQGPIE RAQARVCSSK MGAMSMERLQ ENSTTRP00000002397/1-848 LSGVSGSTWC ISTLYKDPAW SQVALKGPIE RAQARVCSSK MGLMSMERLQ 451 500 ENSBTAP00000006775/1-845 YYAQELGIRE SRGHSTSLVD LWGLLIEYFL YQEENPAKLS DQKEAVSRGQ ENSP00000371833/1-849 YYTQELGVRE RSGHSVSLID LWGLLVEYLL YQEENPAKLS DQQEAVRQGQ bmy_15850T0/1-827 YYAQELGIRE SSGHSASLID LWGLLIEYFL YQEENPAKLS DQQEAVSQGQ ENSTTRP00000002397/1-848 YYAQELGIRE SSGHSASLID LWGLLIEYFL YQEENPAKLS DQQEAVSQGQ 501 550 ENSBTAP00000006775/1-845 NPYPIYASIN VRSNISGEDF AEWCEFTPYE VGFPKYGTYV PTELFGSDFF ENSP00000371833/1-849 NPYPIYTSVN VRTNLSGEDF AEWCEFTPYE VGFPKYGAYV PTELFGSELF bmy_15850T0/1-827 NPYPIYASVN VRDNISGEDF AEWCEFTPHE VGLPKYGAYV PTELFSSEFF ENSTTRP00000002397/1-848 NPYPIYASVN VRSNISGEDF AEWCEFTPHE VGLPKYGAYV PTELFSSEFF 551 600 ENSBTAP00000006775/1-845 MGHLLQLRPE SRICYLQGMW GSAFAASLDE IFLKTSGRGL SFLDWLKDSV ENSP00000371833/1-849 MGRLLQLQPE PRICYLQGMW GSAFATSLDE IFLKTAGSGL SFLEWYRGSV bmy_15850T0/1-827 MGRLLQLRPE PRICYLQGIW GSAFAASLDE IFLKTAGSGL GFLQRCRGSV ENSTTRP00000002397/1-848 MGRLLQLRPE PRICYLQGIW GSAFAASLDE IFLKTAGWDL GFLQRCRGSV 601 650 ENSBTAP00000006775/1-845 NITDGSQELQ LHDPGRLRTR LFTPQGPFYQ AVLDMCTSRL TSAENSNFTR ENSP00000371833/1-849 NITDDCQKPQ LHNPSRLRTR LLTPQGPFSQ AVLDIFTSRF TSAQSFNFTR bmy_15850T0/1-827 NITDNCQKLQ LHDPERLQTR LFTPQGSFCQ AVLGIFTYRF TSAQNSNFTQ ENSTTRP00000002397/1-848 NITDDRQKLQ LHDPARLQTR LFTPQGPFSQ AVLDIFTYRF TSAQNSNFTQ 651 700 ENSBTAP00000006775/1-845 GLYLHEDYVS GREFVAWKDL HPDAFPNQLT PMRDCLYLVD GGFAINSPFP ENSP00000371833/1-849 GLCLHKDYVA GREFVAWKDT HPDAFPNQLT PMRDCLYLVD GGFAINSPFP bmy_15850T0/1-827 GLCLHKDYVS DREFLAWKDS HPDAFPNQLT PMRGCLYLVD GGFAINSPFP ENSTTRP00000002397/1-848 GLCLHKDYVS GREFLAWKDS HPDAFPNQLT PMRDCLYLVD GGFAINSPFP 701 750 ENSBTAP00000006775/1-845 LSLQPQRAVD LILSFDYSLD APFEVLQMTE KYCLDRGISF PRIEVSPEDM ENSP00000371833/1-849 LALLPQRAVD LILSFDYSLE APFEVLKMTE KYCLDRGIPF PSIEVGPEDM bmy_15850T0/1-827 LSLQPQRAVD LILSFDYSLD APFE---MTG KYCLDRGISF PSTEVPPEDL ENSTTRP00000002397/1-848 LSLQPQRAVD LILSFDYSLD APFEVLQMTE KYCLDRGISF PSTEVPPEDL 751 800 ENSBTAP00000006775/1-845 KEPHECYLFA KAEDPSSPII LHFPLVNRTF RTHLAPGVER KTAEEKAGGD ENSP00000371833/1-849 EEARECYLFA KAEDPRSPIV LHFPLVNRTF RTHLAPGVER QTAEEKAFGD bmy_15850T0/1-827 KDPRECYLFA KAEDLRSPIV LHFPLVNRTF RTHLAPGVER QTDEEKACGD ENSTTRP00000002397/1-848 KEPRECYLFA KAEDPRSPIV LHFPLVNRTF RTHLAPGVER QTDEEKACGD 801 850 ENSBTAP00000006775/1-845 FVINGPDTPY GMMNFTFEPQ EFEQLVALSR YNVLNNVETV RKALQLALDR ENSP00000371833/1-849 FVINRPDTPY GMMNFTYEPQ DFYRLVALSR YNVLNNVETL KCALQLALDR bmy_15850T0/1-827 FVISGPDTPY GMMNFTYEPQ EFERLVALSR YNVLNNVETV RQALRLALEQ ENSTTRP00000002397/1-848 FVINGPDTPY GMMNFTYEPQ EFERLVALSR YNVLNNVETV RQALQLALGQ 851 900 ENSBTAP00000006775/1-845 RQTGDRTGG ENSP00000371833/1-849 HQARERAGA bmy_15850T0/1-827 RQARDRAGG ENSTTRP00000002397/1-848 KQAGDRAGG