KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:27 2014 Check: 00 .. Name: ENSP00000280350/1-315 Len: 315 Check: 8984 Weight: 1.00 Name: ENSBTAP00000006791/1-315 Len: 315 Check: 578 Weight: 1.00 Name: bmy_11657T0/1-304 Len: 315 Check: 8870 Weight: 1.00 Name: BACU004566/1-257 Len: 315 Check: 185 Weight: 1.00 // 1 50 ENSP00000280350/1-315 METSSKGLLT QVTQFWNLLD DLAQSDPEGY EKFIQQQLKE GKQLCAAPEP ENSBTAP00000006791/1-315 MESSSKGLLT QVTQFWNLLD DLAESNPESY QKFIQQQLKE GKELCAAPEP bmy_11657T0/1-304 MESSSKGLLT QVTQFWNLLD DLAESNPESY EKFIQQQLKE GKQLCAAPEP BACU004566/1-257 MESSSKGLLT QVTQFWNLLD DLAESNPESY EKFIQQQLKE GKQLCAAPEP 51 100 ENSP00000280350/1-315 QLCLQTRILK PKEKILFINL CQWTRIPAPQ STTHPVPLTV GKPEDTTEIS ENSBTAP00000006791/1-315 QLCLQTRILK PKEKLLFINL CQWKRIPAPE SATHPVPLSI GRPEDISETS bmy_11657T0/1-304 QLCLQTRILK PKEKILFINL CQWKRIPAPQ SATHPVPLSV GRPEDMSETS BACU004566/1-257 QLCLQTRIL- ---------- ---------- ---------- ---------- 101 150 ENSP00000280350/1-315 DAYTVIDVAY NPDVLHAAEK DQVKKNQLIQ MAMKCIEEKF QFTLSHSYHI ENSBTAP00000006791/1-315 DVYTVIDVAY HPDVLQAAEK DQVKKDQLIR MAMRCIEEQF QFTLSNCYYI bmy_11657T0/1-304 DVYTVIDVAY HPDVLQAAEK DQVKKDQLIL MAMKCIEEKL QFTLSNSYHV BACU004566/1-257 ---------- ------AAEK DQVKKDQLIR MAMKCIEEKL QFTLSNSYHV 151 200 ENSP00000280350/1-315 TKFRIKGSIQ RMKQNLMGIQ TDSIDLREKM RRELTLGQIR SSTMSNPDHF ENSBTAP00000006791/1-315 TKFRIKGSIQ RMKQNLMGIQ TNPADLREKM RNELTLEKIR SSTVSNSDQF bmy_11657T0/1-304 TKFRIKGSVH RMKQNLMGIQ TDPTDLREKM RKELTLEQIR SSTVSNSDQF BACU004566/1-257 TKFRIKGRVH RMKQNLMGNQ TDPTDLREKM RKELTLEQIR SSTVSNSDQF 201 250 ENSP00000280350/1-315 PQLLLPKDQV SGKAVCLIEE ISSTEIQVEM KMPAYELKIV HDHSEKPLKI ENSBTAP00000006791/1-315 PQLLLPEDQV SSKTACLIEE ISSTEIKVEM KRPAYELKIV ADQNEKPLKI bmy_11657T0/1-304 PQLLLPKDEV SSKTRCLIEE ISSTEIEVEM KRPAYELKIV ADQNERPLKI BACU004566/1-257 PQLLLPKDEV SSKTRCLIEE ISSTEIEVEM KRPAYELKIV ADQNEKPLKI 251 300 ENSP00000280350/1-315 ELKVELPGIN SVSLCDLSVS EDDLLIEVSE KYRLHLNLPK LIDTEMTTAK ENSBTAP00000006791/1-315 ELKVELPGVN SVSLCDLSVS EDDILIEVSE KYRLYLNLPE SVDTEMTTAK bmy_11657T0/1-304 ELKVELPGIN S--------- -DDLLIEVSE -YRLHLNLPE SVDAEMTTAK BACU004566/1-257 ELKVELPGIN SVSLCDLSVS EDDLLIEVSE -YRLHLNLPE SVDTEMTTAK 301 350 ENSP00000280350/1-315 FIKEKSTLII TMPLV ENSBTAP00000006791/1-315 FIKEKATLIV TMPLV bmy_11657T0/1-304 FIKEKATLIV TMPLV BACU004566/1-257 FIKEKATLIV TMPLV