KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:28 2014 Check: 00 .. Name: ENSP00000265967/1-1129 Len: 1156 Check: 5525 Weight: 1.00 Name: ENSBTAP00000006797/1-1133 Len: 1156 Check: 9729 Weight: 1.00 Name: bmy_03618T0/1-942 Len: 1156 Check: 4536 Weight: 1.00 Name: BACU005611/1-910 Len: 1156 Check: 6295 Weight: 1.00 Name: ENSTTRP00000013046/1-1128 Len: 1156 Check: 3642 Weight: 1.00 // 1 50 ENSP00000265967/1-1129 MAFVPVIPES YSHVLAEFES LDPLLSALRL DSSRLKCTSI AVSRKWLALG ENSBTAP00000006797/1-1133 MTFVPVIPES YSHVLAEFES LDPLLSALRL DSTRLKCTSI AVSRKWLALG bmy_03618T0/1-942 MTFVPVIPES YNHVLAEFES LDPLLSALRL DSTRLKCTSI AVSRKWLALG BACU005611/1-910 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013046/1-1128 MTFVPVIPES YNHVLAEFES LDPLLSALRL DSARLKCTSI AVSRKWLALG 51 100 ENSP00000265967/1-1129 SSGGGLHLIQ KEGWKHRLFL SHREGAISQV ACCLHDDDYV AVATSQGLVV ENSBTAP00000006797/1-1133 SSGGGLNLIQ KEGWKHRLFL SHREGAISQI ACCLHDDDYV AVATSQGLVV bmy_03618T0/1-942 SSGGGLNLIQ KEGWKHRLFL SHREGAISQV ACCLHDDDYV AVATSQGLVV BACU005611/1-910 ---------- ---------- ---------- ---------- ---MTQGLVV ENSTTRP00000013046/1-1128 SSGGGLNLIQ KEGWKHRLFL SHREGTISQV ACCLHDDDYV AVATSQGLVV 101 150 ENSP00000265967/1-1129 VWELNQERRG KPEQMYVSSE HKGRRVTALC WDTAILRVFV GDHAGKVSAI ENSBTAP00000006797/1-1133 VWELNQERRG KPERIYVSSE HKGRKITALC WDTAILRIFV GDHLGKVSAI bmy_03618T0/1-942 VWELNQERRG KPERIYVSSE HKGQKVTALC WDTAILRVFI GDHXGKVSAI BACU005611/1-910 VWELNQDRRG KPERIYVSSE HKGQKVTALC WDTAILRVFI GDHMGKVSAI ENSTTRP00000013046/1-1128 VWELNQERRG KPERIYVSSE HKGRKVTALC WDTAILRVFV GDHMGKVSAI 151 200 ENSP00000265967/1-1129 KLNTSKQAKA AAAFVMFPVQ TITTVDSCVV QLDYLDGRLL ISSLTRSFLC ENSBTAP00000006797/1-1133 KLNTSKQAKA AAAFVMFPVQ TITTVDSCVV QLDYLDGRLL VSSLTRSFLC bmy_03618T0/1-942 KLNTSKQAKA AAAFVMFPVQ TITTVDSCVV H--------- -------FVS BACU005611/1-910 KLNTSKQAKA AAAFVMFPVQ TITTVDSCVV QLDYLDGRLL ISSLTRCFLC ENSTTRP00000013046/1-1128 KLNTSKQAKA AAAFVMFPVH TITTVDSCVV QLDYLDGRLL ISSLTRCFLC 201 250 ENSP00000265967/1-1129 DTEREKFWKI GNKERDGEYG ACFFPGRCSG GQQPLIYCAR PGSRMWEVNF ENSBTAP00000006797/1-1133 DTEREKFWKI GNKERDGEYG ACFFPGRCSA GQQPLIYCAR PGSRMWEVNF bmy_03618T0/1-942 ---------- ---------- ---------- ---------- ---------- BACU005611/1-910 DTE------- ---------- ---------- ---------- ---RMWEVNF ENSTTRP00000013046/1-1128 DTEREKFWKI GNKERDGEYG ACFFPGRCSA SQQPLIYCAR PGSRMWEVNF 251 300 ENSP00000265967/1-1129 DGEVISTHQF KKLLSLPPLP VITLRSEPQY DHTAGSSQSL SFPKLLHL-- ENSBTAP00000006797/1-1133 DGEVLSTHQF KKLLSSPPLP VINLRSEPQY DHTIGSSQSL SFPKLLHI-- bmy_03618T0/1-942 ---------- ---------- ----RSEPQY DHTVGSSQSL SFPKLLHLRC BACU005611/1-910 DGEVISTHQF KKLLSSPPLP VINLRSEPQY DHTVGSSQSL SFPKLLYL-- ENSTTRP00000013046/1-1128 DGEVISTHQF KKLLSSPPLP VINLRSEPQY DHTVGSSQSL SFPKLLHL-- 301 350 ENSP00000265967/1-1129 ---------- --SEHCVLTW TERGIYIFIP QNVQVLLWSE VKDIQDVAVC ENSBTAP00000006797/1-1133 ---------- --SEHCVLTW TERGIYIFIP QNVQVLLWSE VKDIQDVAVC bmy_03618T0/1-942 HTRYGKFRLT NVSEHCVLTW TERGIYIFLP QNVQVLLWSE VKDIQDVAVW BACU005611/1-910 ---------- --SEHCVLTW TERGIYIFLP QNVQVLLWSE VKDIQDVAVW ENSTTRP00000013046/1-1128 ---------- --SEHCVLTW TERGIYIFLP QNVQVLLWSE VKDIQDVAVC 351 400 ENSP00000265967/1-1129 RNELFCLHLN GKVSHLSLIS VERCVERLLR RGLWNLAART CCLFQNSVIA ENSBTAP00000006797/1-1133 KNELFCLHLN GKVSHLSLLS VERCVERLLR RGLWNLAART CCLFQNSVIA bmy_03618T0/1-942 KNELFCLHLN GKVSHLSLLS VERCVERLLR RGLWNLAAQT CCLFQNSVIA BACU005611/1-910 KNELFCLHLN GKVSHLSLLS VERCVERLLR RGLWNLAAQT CCLFQNSVIA ENSTTRP00000013046/1-1128 KNELFCLHLN GKVSHLSLLS VERCVERLLR RGLWNLAAQT CCLFQNSVIA 401 450 ENSP00000265967/1-1129 SRARKTLTAD KLEHLKSQLD HGTYNDLISQ LEELILKFEP LDSACSSRRS ENSBTAP00000006797/1-1133 SRGRKTLTVD KLEHLKSQLD LTTYGDLISQ LEELILKLEP LDSACSSRRS bmy_03618T0/1-942 SRGRKTLTID KLEHLKSQLD LTTYGDLISQ LEELILKFEP LDSACSSRRS BACU005611/1-910 SR-------- ---------- ---------- ---------- ---------- ENSTTRP00000013046/1-1128 SRGRKTLTID KLEHLKSQLD LTTYGDLISQ LEELILKFEP LDSACSSRRS 451 500 ENSP00000265967/1-1129 SISSHESFSI LDSGIYRIIS SRRGSQSDED SCSLHSQTLS EDERFKEFTS ENSBTAP00000006797/1-1133 SISSHESFSI LDSGIYRIIN SRRGSQSDED SCSLHSQTLS EDERLKEFAS bmy_03618T0/1-942 SISSHESFSI LDSGIYRIIN SRRGSQSDED SCSLHSQTLS EDERLKEFTS BACU005611/1-910 -----ESFSI LDSGIYRIIN SRRGSQSDED SCSLHSQTLS EDERLKEFTS ENSTTRP00000013046/1-1128 SISSHESFSI LDSGIYRIIN SRRGSQSDED SCSLHSQTLS EDERLKEFTS 501 550 ENSP00000265967/1-1129 QQEEDLPDQC CGSHGNEDNV SHAPVMFETD KNETFLPFGI PLPFRSPSPL ENSBTAP00000006797/1-1133 HQEEDQPDHC CGSQGSEDNV SHASVTFETD KSETFLPFSI PLSFRSPSPL bmy_03618T0/1-942 HQEEDQPDQC CGSHGNEDNV SHASVMFETD KNETFLPFGI PLSFRSPSPL BACU005611/1-910 HQEEDQADQC CGSHGNE--- ----VYWY-- ---------- ---------L ENSTTRP00000013046/1-1128 HQEEDQPDQC CGSHGNEDNV SHASVMFETD KNETFLPFGI PLSFRSPSPL 551 600 ENSP00000265967/1-1129 VSLQAVKESV SSFVRKTTEK IGTLHTSPDL KVRPELRGDE QSCEEDVSSD ENSBTAP00000006797/1-1133 VSLQAVKESV SSFVRKTTEK IGTLHTSPDL KVRQEPRGDE QSCEEDVSPV bmy_03618T0/1-942 VSLQAVKESV SSFVRKTTEK IGTLHTSPDL KVKPEPRGDE QSCEEDVGPV BACU005611/1-910 IS------SV SSFVRKTTEK IGTLHTSPDL KVRPEPRGDE QSCEEDVGPV ENSTTRP00000013046/1-1128 VSLQAVKESV SSFVRKTTEK IGTLHTSPDL KVRPEPRCDE QSCEEDVGPV 601 650 ENSP00000265967/1-1129 TCPKEEDTEE EKEVTSPPPE EDRFQELKVA TAEAMTKLQD PLVLFESESL ENSBTAP00000006797/1-1133 TCPKEEDIEG KEEITSHPPE EDKFQELTMA TAEAMSKLQD PLVLFEPKSL bmy_03618T0/1-942 TCPKEEDTE- ---------- ---------- -----TKLQD PLVLFEPQSL BACU005611/1-910 TCPKEEDTEG KEEVTSQPPE EDKFQELKMA TAEAMTKLQD PLVLFEPQSL ENSTTRP00000013046/1-1128 TCPKEEDTEG KEEVTSQPPE EDKFQELRMA TAEAMTKLQD PLVLFEPQSL 651 700 ENSP00000265967/1-1129 RMVLQEWLSH LEKTFAMKDF SGVSDTDNSS MKLNQDVLLV NESKKGILDE ENSBTAP00000006797/1-1133 RMVLREWLSQ LEKTFAVKDF SGISDTGSSS VESNQDMQLL DESRKGILDE bmy_03618T0/1-942 RMVLQEWLSQ LEKTFAMKDF SGISDTGNSS MESNQGMLLL DESKKGILDE BACU005611/1-910 RMVLQEWLSQ LEKTFATKDF SGISDTGNSS MESNQGMLLL DESKKGILDE ENSTTRP00000013046/1-1128 KMVLQEWLSQ LEKTFAMKDF SGISDTGNSS MESNQGMLLL DESKKGILDE 701 750 ENSP00000265967/1-1129 DNEKEKRDSL GNEESVDKTA CECVRSPRES L-DDLFQICS PCAIASGLRN ENSBTAP00000006797/1-1133 EYEKEERDSL GNEETIDQTA CESVNSLREP LDDDVFQICS PWSIADSLQK bmy_03618T0/1-942 EDEKERRDSS GNEETVDQAA CESVNSLRES LDDDIFQVCS PCSIADSLQK BACU005611/1-910 EDEKERRDSS GNEETVDQAA CESVNSLRES LDDDIFQVCS PCSIADSLQK ENSTTRP00000013046/1-1128 EDEKEKRSSL GNEETVDQAV CDSVNSLRES LDDDIFQVCS PCSIPGSLQK 751 800 ENSP00000265967/1-1129 DLAELTTLCL ELNVLNSKIK STSGHVDHTL QQYSPEILAC QFLKKYFFLL ENSBTAP00000006797/1-1133 DLAELTTLCL ELSVLNSEIK SASGHGDHTL QQCSLEMLTC QFLKKYFFLL bmy_03618T0/1-942 DLAEMTTLCL ELNVLNSEIK SASRHVDHTL QQCSPEILAC QFLKKYFFLL BACU005611/1-910 DLAEMTTLCL ELNVLNSEIK SASRHVDLTL QQCSPEILAC QFLKKYFFLL ENSTTRP00000013046/1-1128 DLAEVTTLCL ELNVLNSEIK SASRHVDHTL QQCSPEILAC QFLKKYFFLL 801 850 ENSP00000265967/1-1129 NLKRAKESIK LSYSNSPSVW DTFIEGLKEM A--------- SSNPVYMEME ENSBTAP00000006797/1-1133 DLKRAKESIK LSYPKSPCVW DTFIEGLKEM V--------- SSSPTHIKME bmy_03618T0/1-942 DLKRAKESIK LSYTNSPCVW DTFIEGLKDV MFPVIDVDFK QTFHSLPKME BACU005611/1-910 DLKRAKESIK LSYTNSPCVW DTFIEGLKEM A--------- SSNPTYIKME ENSTTRP00000013046/1-1128 DLKRAKESIK LSYTNSPCVW DTFIEGLKEM A--------- SSNPTYIKME 851 900 ENSP00000265967/1-1129 KGDLPTRLKL LDDEVPFDSP LLVVYATRLY EKFGESALRS LIKFFPSILP ENSBTAP00000006797/1-1133 EGDLPTRLKL LEDSVPFDSP LLIAYAARLY EKFGESALRS LIRFYPSILP bmy_03618T0/1-942 EGDLPTRLKL LDDLVPFDSP LLIAYATRLY EKFGESALRS LIRFYPSILP BACU005611/1-910 EGDLPTRLNL LDDLVPFDSP LLIAYATRLY EKFGESALRS LIRFYPSILP ENSTTRP00000013046/1-1128 EGDLPTRLKL LDDLVSFDSP LLIAYATRLY EKFGESALRS LIRFYPSILP 901 950 ENSP00000265967/1-1129 SDIIQLCHHH PAEFLAYLDS LVKSRPEDQR SSFLESLLQP ESLRLDWLLL ENSBTAP00000006797/1-1133 SDVMQLCHHN PVQFLTYLDS LVKSRPEDQR PSFLESLLQP ESLRLDWLLL bmy_03618T0/1-942 SDVMQLCHHH PAQFLAYLDS LVKSRPEDQR PFFLESLLQP ESLRLDWLLL BACU005611/1-910 SDVMQLCHHH PAQFLAYLDS LVKSRPEDQR PFFLESLLQP ESLRLDWLLL ENSTTRP00000013046/1-1128 SDVMQLCHHH PAQFLAYLDS LVKSRPEDQR SFFLESLLQP ESLRLDWLLL 951 1000 ENSP00000265967/1-1129 AVSLDAPPST STMDDEGYPR PHSHLLSWGY SQLILHLIKL PADFITKEKM ENSBTAP00000006797/1-1133 AVSHDAPPST STMDDEGNPR PHSHLFSWGY SQLILHLIKL PADFTTKEKM bmy_03618T0/1-942 AVSHDAPPST STMDDEGDPR PHSHLFSWGY SQLILHLIKL PADFTTKEKV BACU005611/1-910 AVSHDAPPST STMDDEGDPR PHSHLFSWGY SQLILHLIKL PADFTTKEKV ENSTTRP00000013046/1-1128 AVSHDAPPST STMDDEGDPX XXXXXXXWGY SQLILHLIKL PADFTTKEKV 1001 1050 ENSP00000265967/1-1129 TDICRSCGFW PGYLILCLEL ERRREAFTNI VYLNDMSLME GDNGWIPETV ENSBTAP00000006797/1-1133 TDICRSHGFW PGYLILCLEL ERRREAFTNI VYLNDMSLME GDNGWIPETV bmy_03618T0/1-942 TDICRSHGLD PRD---CGGM EASPTSGTEQ EHKAS----- ------PPEV BACU005611/1-910 TDICRSHGFW PGYLILCLEL GRRREAFTNI VYLNDMSLME GDNGWIPETV ENSTTRP00000013046/1-1128 TDICRSH-FS PGVFIFFWG- GERGGAPLHI LYLNNRIVME RTFCWIPETV 1051 1100 ENSP00000265967/1-1129 EEWKLLLHLI QSKSTRPAPQ ESLNGSLSDG PSPINVENVA LLLAKAMGPD ENSBTAP00000006797/1-1133 EEWKLLLHLV QNTSTKPAPQ QSPDGNFSDG PSPITVENVA LLLAKAMGPD bmy_03618T0/1-942 TKWEL----- ---------- ---------- ---------- ---------- BACU005611/1-910 EEWKLLLHLV QNKSTKPAPQ KSPNGNFSDG PSPINVENVA LLLAKSMGPD ENSTTRP00000013046/1-1128 EEWKLLLHLV QNKSTKPAPQ KSPNGNFSDG PSPINVENVA LLLAKVMGPD 1101 1150 ENSP00000265967/1-1129 RAWSLLQECG LALELSEKFT RTCDILRIAE KRQ---RALI QSMLEKCDRF ENSBTAP00000006797/1-1133 RAWSLLQECG LTLDLSERFT RTCDILRIAE KRQRDFRALI QSMLEKCDRF bmy_03618T0/1-942 QRWAFPYQCG E--------- ---------- ---------- ------CG-- BACU005611/1-910 RAWSLLQECG LTLELSERFT RTCDILRIAE KRQ---RALI QSMLEKCDRF ENSTTRP00000013046/1-1128 RAWSLLQECG LTLELSEKFT RTCDILRIAE KRQ---RALI QSMLEKCDRF 1151 1200 ENSP00000265967/1-1129 LWSQQA ENSBTAP00000006797/1-1133 LWSQQA bmy_03618T0/1-942 --TPVS BACU005611/1-910 LWSQQA ENSTTRP00000013046/1-1128 LWSQQA