KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:30 2014 Check: 00 .. Name: ENSP00000363590/1-542 Len: 542 Check: 6581 Weight: 1.00 Name: ENSBTAP00000006810/1-542 Len: 542 Check: 4236 Weight: 1.00 Name: ENSTTRP00000014418/1-541 Len: 542 Check: 3981 Weight: 1.00 Name: bmy_07936T0/1-418 Len: 542 Check: 5955 Weight: 1.00 Name: BACU003400/1-542 Len: 542 Check: 3911 Weight: 1.00 // 1 50 ENSP00000363590/1-542 MPRRGLILHT RTHWLLLGLA LLCSLVLFMY LLECAPQTDG NASLPGVVGE ENSBTAP00000006810/1-542 MPRRGLILQT RTHWLLLGLA LLCSLILFLY LLECAPQTDG NASLPGIIGE ENSTTRP00000014418/1-541 MPRRGLILQT RTHWLLLGLA LLCSLILFLY LLECAPQTDG NASLPGIVGE bmy_07936T0/1-418 MPRRGLILQT RTHWLLLGLA LLCSLILFLY LLECAPQTDG NASLPGIVGE BACU003400/1-542 MPRRGLILQT RTHWLLLGLA LLCSLILFLY LLECAPQTDG NASLPGIVGE 51 100 ENSP00000363590/1-542 NYGKEYYQAL LQEQEEHYQT RATSLKRQIA QLKQELQEMS EKMRSLQERR ENSBTAP00000006810/1-542 NYGKEYYQAL LQEQEEHYQT RATSLKRQIA QLKQELQEMS EKMRSLQERK ENSTTRP00000014418/1-541 NYGKEYYQAL LQEQEEHYQT RATSLKRQIA QLKQELQEMS EKMRSLQERK bmy_07936T0/1-418 NYGKEYYQAL LQEQEEHYQT RATSLKRQIA QLKQELQEMS EKMRSLQERK BACU003400/1-542 NYGKEYYQAL LQEQEEHYQT RATSLKRQIA QLKQELQEMS EKMRSLQERK 101 150 ENSP00000363590/1-542 NVGANGIGYQ SNKEQAPSDL LEFLHSQIDK AEVSIGAKLP SEYGVIPFES ENSBTAP00000006810/1-542 NVGANGISYQ GNKEQAPSDL LEFLHSQIDK AEVSIGAKLP SEYGVIPFES ENSTTRP00000014418/1-541 NVGANGIGYQ GNKEQAPSDL LEFLHSQIDK AEVSIGAKLP SEYGVIPFES bmy_07936T0/1-418 NVGANGIGYQ GNKEQAPSDL LEFLHSQIDK AEVSIGAKLP SEYGVIPFES BACU003400/1-542 NVGANGIGYQ GNKEQAPSDL LEFLHSQIDK AEVSIGAKLP SEYGVIPFES 151 200 ENSP00000363590/1-542 FTLMKVFQLE MGLTRHPEEK PVRKDKRDEL VEVIEAGLEV INNPDEDDEQ ENSBTAP00000006810/1-542 FTLMKVFQLE MGLTRHPEEK PVRKDKRDEL VEVIEAGLEV INNPDEDDEQ ENSTTRP00000014418/1-541 FTLMKVFQLE MGLTRHPEEK PVRKDKRDEL IEVIEAGLEV INNPDEDDEQ bmy_07936T0/1-418 FTLMKVFQLE MGLTRHPEEK PVRKDKRDEL VEVIEAGLEV INNPDEDDEQ BACU003400/1-542 FTLMKVFQLE MGLTRHPEEK PVRKDKRDEL VEVIEAGLEV INNPDEDDEQ 201 250 ENSP00000363590/1-542 EDEEGPLGEK LIFNENDFVE GYYRTERDKG TQYELFFKKA DLTEYRHVTL ENSBTAP00000006810/1-542 EDEDGPLGEK LIFNENDFVE GYYRTEKDKG TQYELFFKKA DLMEYRHVTL ENSTTRP00000014418/1-541 EDEDGPLGEK LVFNENDFIE GYYRTERDKG TLYELFFKKA DLTEYRHVTL bmy_07936T0/1-418 EDEDGPLGEK LVFNENDFIE GYYRTERDKG TLYELFFKKA DLMEYKHVTL BACU003400/1-542 EDEDGPLGEK LVFNENDFIE GYYRTERDKG TLYELFFKKA DLMEYRHVTL 251 300 ENSP00000363590/1-542 FRPFGPLMKV KSEMIDITRS IINIIVPLAE RTEAFVQFMQ NFRDVCIHQD ENSBTAP00000006810/1-542 FRPFGPLMKV KSEMIDITRS VINIIVPLAG RTEAFAQFMQ NFRDVCIHQD ENSTTRP00000014418/1-541 FRPFGPLMKV KSEMIDITRS IINIIVPLAE RTEAFAQFMQ NFRDVCIHQD bmy_07936T0/1-418 FRPFGPLMKV KSEMIDITRS IINIIVPLAE RTEAFAQFMQ NFRDVCIHQD BACU003400/1-542 FRPFGPLMKV KSEMIDITRS IINIIVPLAE RTEAFAQFMQ NFRDVCIHQD 301 350 ENSP00000363590/1-542 KKIHLTVVYF GKEGLSKVKS ILESVTSESN FHNYTLVSLN EEFNRGRGLN ENSBTAP00000006810/1-542 KRIHLTVVYF GKEGLSKVKS ILESVASESN FHNYTLVSLN EEFNRGRGLN ENSTTRP00000014418/1-541 KRIHLTVVYF GKEGLSKVKS ILESVTSESN FHNYTLVSLN EEFNRGRGLN bmy_07936T0/1-418 KRIHLTVVYF GKEGLSKVKS ILESVTSESN FHNYTLVSLN EEFNRGRGLN BACU003400/1-542 KRIHLTVVYF GKEGLSKVKS ILESVTSESN FHNYTLVSLN EEFNRGRGLN 351 400 ENSP00000363590/1-542 VGARAWDKGE VLMFFCDVDI YFSAEFLNSC RLNAEPGKKV FYPVVFSLYN ENSBTAP00000006810/1-542 VGARAWDKGE VLMFFCDVDI YFSAEFLNSC RLNAEPGKKV FYPVVFSLYN ENSTTRP00000014418/1-541 VGARAWDKGE VLMFFCDVDI YFSAEFLNSC RLNAEPGKKV FYPVVFSLYN bmy_07936T0/1-418 VGARAWDKGE VLMFFCDVDI YFSAEFLNSC RLNAEPGKKV FYPVVFSLYN BACU003400/1-542 VGARAWDKGE VLMFFCDVDI YFSAEFLNSC RLNAEPGKKV FYPVVFSLYN 401 450 ENSP00000363590/1-542 PAIVYANQEV PPPVEQQLVH KKDSGFWRDF GFGMTCQYRS DFLTIGGFDM ENSBTAP00000006810/1-542 PAIVYANLDV PPPVEQQLVH KKDSGFWRDF GFGMTCQYQS DFLTIGGFDM ENSTTRP00000014418/1-541 PAIVYANLDV PPPVEQQLXX XXXXXXXXXX XXXXXXXXXX XXXXXXG-DM bmy_07936T0/1-418 PAIVYANLDV PPPVEQQL-- ---------- ---------- ---------- BACU003400/1-542 PAIVYANLDV PPPVEQQLVH KKDSGFWRDF GFGMTCQYRS DFLTIGGFDM 451 500 ENSP00000363590/1-542 EVKGWGGEDV HLYRKYLHGD LIVIRTPVPG LFHLWHEKRC ADELTPEQYR ENSBTAP00000006810/1-542 EVKGWGGEDV HLYRKYLHSD LIVIRTPVPG LFHLWHEKRC ADELTPEQYR ENSTTRP00000014418/1-541 EVKGWGGEDV HLYRKYLHGD LIVIRTPVPG LFHLCHEKRC ADELTPEQYR bmy_07936T0/1-418 ---------- ---------- ---------- ---------- ---------- BACU003400/1-542 EVKGWGGEDV HLYRKYLHGD LIVIRTPVPG LFHLWHEKRC ADELTPEQYR 501 550 ENSP00000363590/1-542 MCIQSKAMNE ASHSHLGMLV FREEIETHLH KQAYRTNSEA VG ENSBTAP00000006810/1-542 MCIQSKAMNE ASHSHLGMLV FREEIETHLH KQAYRTNSEA VG ENSTTRP00000014418/1-541 MCIQSKAMNE ASHSHLGMLV FREEIETHLH KQAYRTNSES VG bmy_07936T0/1-418 ---------- ---------- ---------- ---------- -- BACU003400/1-542 MCIQSKAMNE ASHSHLGMLV FREEIAAHLH KQAYRTNGEA VG