KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:31 2014 Check: 00 .. Name: ENSP00000228510/1-396 Len: 448 Check: 3552 Weight: 1.00 Name: ENSBTAP00000006828/1-440 Len: 448 Check: 742 Weight: 1.00 Name: bmy_08290T0/1-308 Len: 448 Check: 8510 Weight: 1.00 Name: BACU008382/1-404 Len: 448 Check: 7057 Weight: 1.00 Name: ENSTTRP00000010157/1-396 Len: 448 Check: 8164 Weight: 1.00 // 1 50 ENSP00000228510/1-396 MLSEVLLVSA PGKVILHGEH AVVHGKVALA VSLNLRTFLR LQPHSNGKVD ENSBTAP00000006828/1-440 MLSEVLLVSA PGKVILHGEH AVVHGKVALA VALNLRTFLR LQPHSNGRVG bmy_08290T0/1-308 ------MESR SGS------- ---------- ---------- ----GSGAEG BACU008382/1-404 MLSEVLLVSA PGKVILHGEH AVVHGKVALA VALNLRTFLR LQPHSNGKVG ENSTTRP00000010157/1-396 MLSEVLLVSA PGKVILHGEH AVVHGKVALA VALNLRTFLR LQPHSNGKVG 51 100 ENSP00000228510/1-396 LSLPNIGIKR AWDVARLQSL DTSFL----- ---EQGDVTT PTSEQVEKLK ENSBTAP00000006828/1-440 LNLPNIGVRR AWDVASLQLL DTSFL----- ---GHGDSAA LTAKHVEKLK bmy_08290T0/1-308 L------WRQ ALSPTRLHLF AHVT------ ---EQGDVTA LTPEQVEKLK BACU008382/1-404 LNLPNIGIKR AWDVAKLQMV DTSFLSKYRE QEPEQGDVPA LTPEQVEKLK ENSTTRP00000010157/1-396 LNLPNIGIQR VWDVAKLQML DTSFL----- ---KQGDVTA LTPEQMEKLK 101 150 ENSP00000228510/1-396 EVAGLPDDCA VTERLAVLAF LYLYLSICRK QRALPSLDIV VWSELPPGAG ENSBTAP00000006828/1-440 EVAGFPKDCV DPEHLAVLAF LYLYLSICQS QRALPSLDIT VWSELPTGAG bmy_08290T0/1-308 EVAGFPEDCA DHEHLAVLSF LYLYLSVCQS QRALPNLDVT VWSELPTGAG BACU008382/1-404 EVAGFPEDCA DHEQLAVLSF LHLYLSVCQS QRALPSLDVT VWSELPTGAG ENSTTRP00000010157/1-396 EVAGFPEDCA DHEHLAVLSF LYLYLSICQS QRALPSLDIA VWSELPTGAG 151 200 ENSP00000228510/1-396 LGSSAAYSVC LAAALLTVCE EIPNPLKDGD CVNRWTKEDL ELINKWAFQG ENSBTAP00000006828/1-440 LGSSAAYSVC LAAALLTACE EIPNPLKDGE AAGRWTEENL ELINKWAFQG bmy_08290T0/1-308 LGSSAAYSVC LAAALLTACK EIPNPLKDGE AASRWTEDNL ELINKWAFQG BACU008382/1-404 LGSSAAYSVC LAAALLTACK EIPNPLKDGE AASRWTEENL ELINKWAFQG ENSTTRP00000010157/1-396 LGSSAAYSVC LAAALLTACK EIPNPLKDGE AASRWTEESL ELINKWAFQG 201 250 ENSP00000228510/1-396 ERMIHGNPSG VDNAVSTWGG ALRYHQGKIS SLKRSPALQI LLTNTKVPRN ENSBTAP00000006828/1-440 ERVIHGNPSG VDNAVSTWGG ALRYQQGKIS SLKRPPVLKI LLINTKVPRS bmy_08290T0/1-308 ERVIHGNPSG VDNAVSTWGG ALRYQQGKIS SLKRPPALKI LLINTKVPRS BACU008382/1-404 ERVIHGNPSG VDNAVSTWGG ALRYQQGKIS SLKRPPALKI LLINTKVPRS ENSTTRP00000010157/1-396 ERVIHGNPSG VDNAVSTWGG ALRYQQGKIS SLNRPPALKI LLTNTKVPRS 251 300 ENSP00000228510/1-396 TRALVAGVRN RLLKFPEIVA PLLTSIDAIS LECERVLGEM GEAPAPEQYL ENSBTAP00000006828/1-440 TKVLVANVRS RLLKFPEIVA PLLTSIDAIS LECERVLGEM AAAPTPEHYL bmy_08290T0/1-308 TKALVAGVRS RLLKFPEIVA PLLTSIDAIS LECERVLGEM AAAPAPEHYL BACU008382/1-404 TKALVAGVRS RLLKFPEIVA PLLTSIDAIS LECERVLGEM AAAPAPEHYL ENSTTRP00000010157/1-396 TKALVAGVRS RLLKFPEIVA PLLTSIDAIS LECERLLGEM AAAPAPEHYL 301 350 ENSP00000228510/1-396 VLEELIDMNQ HHLNALGVGH ASLDQLCQVT RARGLHSKLT GAGGGGCGIT ENSBTAP00000006828/1-440 TLEELIDMNQ HHLNALGVGH ASLDQLCQVT TAHGLHSKLT GAGGGGCGIT bmy_08290T0/1-308 VL-EILDQNV T--------- ---------- ---------- ---------- BACU008382/1-404 VLEELIDMNQ HHLNALGVGH ASLDRLCQVT MAHGLHSKLT GAGGGGCGIT ENSTTRP00000010157/1-396 VLEELIDMNQ HHLNALGVGH ASLDRLCQVT MAHGLHSKLT GAGGGGCGIT 351 400 ENSP00000228510/1-396 LLKPGLEQPE VEATKQALTS CGFDCLETSI GAPGVSI--- ---------- ENSBTAP00000006828/1-440 LLRPDVERPA VEATKRALSG CGFDCWETSV GAPGVSVTRP PPWMPLSSKA bmy_08290T0/1-308 ----DLERPE VEAMKQALTS CGFDCWETSI GAPGVSV--- ---------- BACU008382/1-404 LLRPDLERPE VEAVKQALTS CGFDCWETSI GAPGVSV--- ---------- ENSTTRP00000010157/1-396 LLRPDLERPE VEAMKQALTS CGFDCWETSI GAPGVSV--- ---------- 401 450 ENSP00000228510/1-396 ---------- -HSATSLDSR VQQAL----- ---------- DG-----L ENSBTAP00000006828/1-440 WTASERSPCS CSPTTKPSPR LFQALELASV LASGHPAPDA DGRPPAPL bmy_08290T0/1-308 ---------- -HTAASLDAP VRQAL----- ---------- DG-----L BACU008382/1-404 ---------- -HAATSLDTP VRQAL----- ---------- DG-----L ENSTTRP00000010157/1-396 ---------- -HTAASLDAP VRQAL----- ---------- DG-----L