KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:31 2014 Check: 00 .. Name: ENSTTRP00000013099/1-288 Len: 295 Check: 5428 Weight: 1.00 Name: ENSP00000361811/1-290 Len: 295 Check: 9041 Weight: 1.00 Name: ENSBTAP00000006831/1-247 Len: 295 Check: 6135 Weight: 1.00 Name: bmy_08788T0/1-246 Len: 295 Check: 2476 Weight: 1.00 Name: BACU015453/1-173 Len: 295 Check: 2383 Weight: 1.00 // 1 50 ENSTTRP00000013099/1-288 --MSPSAKKR LKNTVVSKMQ DEEPWDKIQQ PVSKVIARNR LKAVLKNLAL ENSP00000361811/1-290 --MSPSAKKR PKNSRVSKMQ DEKLRDETEQ PVSKVIERNR LRTVLKNLSL ENSBTAP00000006831/1-247 --VRPLTKKR PKNKVVSKMQ AKEPEDKIHQ PVSKVIARNR LKMVLKHLSL bmy_08788T0/1-246 MAEAPGQPLE LNQAPLPRLL ERSQDALTLR TNSKPLS--- ---VLKNLSL BACU015453/1-173 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013099/1-288 LKLLESSNPR TQELHNLAKR CWNSLLRVPK IRRVSSGXXX XXXXXXXXXX ENSP00000361811/1-290 LKLLKSSNRR IQELHKLAKR CWHSLLSVPK ILRISSGENS ACNKTKQNNE ENSBTAP00000006831/1-247 LKLLKSSNPR IQELYNLARR CWNSLLRVPK ILGISSGHDN VWDEVEQNNK bmy_08788T0/1-246 LKLLKSSNPR TQELHNLARR CWNSLLRVPK MLGVSSGYDD VWDNVEQNNK BACU015453/1-173 ---------- ---------- ---------- MLGVSSGYDD VWDKAEQNNK 101 150 ENSTTRP00000013099/1-288 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX---XXXXX ENSP00000361811/1-290 EFQ-EIGCSE KELKSKKLES TGDPKKKEYK EWKSQVQSGM RNKEKTSLAA ENSBTAP00000006831/1-247 ELQEEAGCSY QKLDSEKLKP TGEP--EECE ESRPRAQE-- ---------A bmy_08788T0/1-246 DLQ-EAGCPN KKLDSKKSEP L-----RESE ESRPKAALGE RH---TAQKA BACU015453/1-173 DLQ-EAGCPN KKLDSKKSEP L-----RESE ESRPKAAPGE RH---TAQTA 151 200 ENSTTRP00000013099/1-288 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361811/1-290 MPRKEKHIEP EVPRTSRDDS L--NPGVQGR QPLTEGPRVI FIKPYRNRTP ENSBTAP00000006831/1-247 MPQKEEQMEP EAPTTSRGHG LTTSPRAQAQ EPPTGDPRVV FWKTHQDRTP bmy_08788T0/1-246 VPQREGQMEP EVPVTSKGHG LPTDPGAQEG QSPTGDPRVV FLKTRQYRTP BACU015453/1-173 VPQREEQMHP EVPVTSKGHG LPTDPGAQEG QSPTGDPRVV FLKTRQYRTP 201 250 ENSTTRP00000013099/1-288 XXXXXQLDTA DQWIWCEGLP TLVHLPGPRV MCRPSALRSV KRCCTRLCSA ENSP00000361811/1-290 MGHMKQLDVA DQWIWFEGLP TRIHLPAPRV MCRSSTLRWV KRRCTRFCSA ENSBTAP00000006831/1-247 MKDVKQPERA NQRVWFEGLP TRVHLPGPRV MCRSSALRWV KRCCTRFCSA bmy_08788T0/1-246 MKDMKQLETA DQWIWFEGLP TRVHLPGPRV MCRSSALRRV KRCCTRLCSA BACU015453/1-173 MKDMKQLETA DQCIWFEGLP TRVHLPGPRV MCRSSALRWV KRRCTRLCSA 251 300 ENSTTRP00000013099/1-288 SLELPMVRPY KV--TWMGAR GVRRGRRSRN HLNGRDGREN SRVYK ENSP00000361811/1-290 SLEMPMWHPY KVDVTWTRAR GASRGWRSRH QLKGRNGWRN SRVYK ENSBTAP00000006831/1-247 SLETPMVHLY KV-------- ---------- ---------- ----- bmy_08788T0/1-246 SLELPMGRPY K--------- ---------- ---------- ----- BACU015453/1-173 SLELPMVRPY KV-------- ---------- ---------- -----