KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:32 2014 Check: 00 .. Name: ENSBTAP00000006842/1-1160 Len: 1170 Check: 9786 Weight: 1.00 Name: ENSTTRP00000013668/1-1168 Len: 1170 Check: 2674 Weight: 1.00 Name: bmy_05379T0/1-1091 Len: 1170 Check: 7280 Weight: 1.00 Name: BACU016187/1-1016 Len: 1170 Check: 445 Weight: 1.00 // 1 50 ENSBTAP00000006842/1-1160 MAQQANIGEL LSMLDSPLLS VRDDVTTVFK ENLNSDRGPM LVNTLVDYYL ENSTTRP00000013668/1-1168 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL bmy_05379T0/1-1091 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL BACU016187/1-1016 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL 51 100 ENSBTAP00000006842/1-1160 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYV GKAASRLSAL LLLGHVVRLQ ENSTTRP00000013668/1-1168 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYV GKAASRLSTL SLLGHVVRLQ bmy_05379T0/1-1091 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYM GKAASRLSTL SLLGHVVRLQ BACU016187/1-1016 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYM GKAASRLSTL SLLGHVVRLQ 101 150 ENSBTAP00000006842/1-1160 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH ENSTTRP00000013668/1-1168 PSWKHKLSQA PLLPSLLKCL KVDTDAIVLT TGALVLVTVL PMIPQSGKQH bmy_05379T0/1-1091 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH BACU016187/1-1016 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH 151 200 ENSBTAP00000006842/1-1160 LHDFFDIFGR LSSWCLKKPG HVTEVYLVHL HASVYALFHR LYGMYPCNFV ENSTTRP00000013668/1-1168 LRDFFDIFGR LSSWCLKKPG HVTEIYLVHL HASVYALFHR LYGMYPCNFV bmy_05379T0/1-1091 LHDFFDIFGR LSSWCLKKPG KDLLLYL--- ---------- -----SC--- BACU016187/1-1016 LHDFFDIFGR LSSWCLKKPG HVTEIYLVHL HASVYALFHR LYGMYPCNFV 201 250 ENSBTAP00000006842/1-1160 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL ENSTTRP00000013668/1-1168 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL bmy_05379T0/1-1091 ---------- ---------- ---------- ---------- ---PTKWKRL BACU016187/1-1016 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL 251 300 ENSBTAP00000006842/1-1160 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVSASSYVDT ENSTTRP00000013668/1-1168 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVTASSYVDT bmy_05379T0/1-1091 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRLA DVTASSYVDT BACU016187/1-1016 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVTASSYVDT 301 350 ENSBTAP00000006842/1-1160 QNSYGNATST PYSTSRLT-L NTPGQLPQTL SSPSTRLLAE PPQATLWSPS ENSTTRP00000013668/1-1168 QNSYGSATST PHSTSRLMLL NTPGQLPQTL SSLSTRLLTE PPQATLWSPS bmy_05379T0/1-1091 QNSYGSATST PHSTSRLMLL NTPGQLPQTL SSLSTRLLTE PPQATLWSPS BACU016187/1-1016 QNSY------ ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000006842/1-1160 AVCGMTTPPT SPGNVPPDLS HPYSKVFGTT AGGKGTPLGT PATSPPPAPP ENSTTRP00000013668/1-1168 VVCGMTTPPT SPGNVPPDLS HPYSKVFGTA AGRKGTPLGT PATSPPPAPP bmy_05379T0/1-1091 VVCGMTTPPT SPGNVPPDLS HPYSKVFGT- AGRKGTPLGT PATSPPPAPP BACU016187/1-1016 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000006842/1-1160 CHSDDCVHLS LPQ--ATAPK KEERTDSARP CLHRQPHVPN DRGLEELHGG ENSTTRP00000013668/1-1168 CHSDDYAHIS LPT-MATAP- KEERTDSARP CLHRQHHLPN DRGLEELPGS bmy_05379T0/1-1091 CHSDDYVHIS LPQAMATAPK KEERTDXARP CLHRQHHLPN DRGLEELPGS BACU016187/1-1016 ---------- ---------- ---------- ---------- ----EELPGS 451 500 ENSBTAP00000006842/1-1160 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLVPR ENSTTRP00000013668/1-1168 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR bmy_05379T0/1-1091 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR BACU016187/1-1016 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR 501 550 ENSBTAP00000006842/1-1160 GGFDSPFYRD SLPGCPRKTL SASSSTQGTS ANPEPLNSSL DKSGPDTPKQ ENSTTRP00000013668/1-1168 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSAL DRLGPDTPKQ bmy_05379T0/1-1091 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSTL DRLGPDTPKQ BACU016187/1-1016 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSTL DRLGPDTPKQ 551 600 ENSBTAP00000006842/1-1160 AFTPIDLPCG GTGESPAGNR ERQASLEASI LTPSPCKIPP QRGVGFGSGQ ENSTTRP00000013668/1-1168 AFTPIDLPCG GAEESPAGDR ERQASLESSI LTPSPFKIPP QRGVGFGGGQ bmy_05379T0/1-1091 AFTPIDLPCG GAEESPAGDR ERQASLESSI LTPSPFKIPP QRGVGFGSGQ BACU016187/1-1016 AFTPIELPCG GAEESPAGDR ERQASLESGI LAPSPFKIPP QRGVGFGSGQ 601 650 ENSBTAP00000006842/1-1160 PPPYDHLFEV ALPKTAHHFV SKKTEELLKK AKGSAEEDFT PSASPMEVLD ENSTTRP00000013668/1-1168 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDFM PSASPMEVLD bmy_05379T0/1-1091 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDCT PSASPMEVLD BACU016187/1-1016 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDCT PSASPMEVLD 651 700 ENSBTAP00000006842/1-1160 RLIQQGADVH SKELNRLSLP SKSVDWTHFG GSPPSDEICT LRNQLLLLHN ENSTTRP00000013668/1-1168 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN bmy_05379T0/1-1091 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN BACU016187/1-1016 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN 701 750 ENSBTAP00000006842/1-1160 QLLYERFKRQ QHALRNRRLL RKVIRASALE EHNAAMKDQL KLQEKDIQIW ENSTTRP00000013668/1-1168 QLLYERFKRQ QHALRNRRLL RKVTRAAALE EHNAAMKDQL KLQEKDIQIW bmy_05379T0/1-1091 QLLYERFKRQ QHALRNRRLL RKVIRAAALE EHNAAMKDQL KLQEKDIQIW BACU016187/1-1016 QLLYERFKRQ QHALRNRRLL RKVIRAAALE EHNAAMKDQL KLQEKDIQIW 751 800 ENSBTAP00000006842/1-1160 KISLQKEQAR YNQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL ENSTTRP00000013668/1-1168 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL bmy_05379T0/1-1091 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL BACU016187/1-1016 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL 801 850 ENSBTAP00000006842/1-1160 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR ENSTTRP00000013668/1-1168 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR bmy_05379T0/1-1091 EDCRNMIAEL RIELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR BACU016187/1-1016 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR 851 900 ENSBTAP00000006842/1-1160 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KAAYRKELEK NRSHVLQQNQ ENSTTRP00000013668/1-1168 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ bmy_05379T0/1-1091 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ BACU016187/1-1016 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ 901 950 ENSBTAP00000006842/1-1160 RLDTCQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA ENSTTRP00000013668/1-1168 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA bmy_05379T0/1-1091 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA BACU016187/1-1016 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA 951 1000 ENSBTAP00000006842/1-1160 QKRITQVFEL EILDLYGKLE KDGLLKKLEE QKPEAAEAAE ERLDYCQDGC ENSTTRP00000013668/1-1168 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC bmy_05379T0/1-1091 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC BACU016187/1-1016 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC 1001 1050 ENSBTAP00000006842/1-1160 SDSVTGH-NE EAPGRNGETK PSRPGGA--- ---RGGGGGG GRGGGSSSEL ENSTTRP00000013668/1-1168 SDSVTGHNNE EASGPNGETK PPRPGGARGG SGSRGGGGGG SSSSSGGSEL bmy_05379T0/1-1091 SDPVTGHNNE EASGPNGETK PPRP------ --------GG SSSSSGGSEL BACU016187/1-1016 SDSVTGHNNE EASGPNGETK PPRF------ --------GG SSSSSGGSEL 1051 1100 ENSBTAP00000006842/1-1160 STPEKPPNPR AGPFSSRWET VVGEPTSGTP TTVGSLPSSE SFLGMKAREL ENSTTRP00000013668/1-1168 STPEKPPNPR VGPCSSRWET AVGEPTTGIP MTVGSLPSSK SFLGMKAREL bmy_05379T0/1-1091 STPEKPPNPR MGPLSSRWET AVGEPTAGIP VTVGSLPSSK SFLGMKAREL BACU016187/1-1016 STPEKPPNPR VGPLSSRWET AVGEPTAGIP VTVGSLPSSK SFLGMKAREL 1101 1150 ENSBTAP00000006842/1-1160 FRNKSESQCD EDGLTVGSLS ETLKTELGKD SGVEARAPLT LDGPLLPAPK ENSTTRP00000013668/1-1168 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPPLN LDGPQPPPPK bmy_05379T0/1-1091 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPPLN LDGPQPPPPK BACU016187/1-1016 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPSLN LDGPQPPPPK 1151 1200 ENSBTAP00000006842/1-1160 PDSVGQLRIM DYNEAQLEHS ENSTTRP00000013668/1-1168 PDSVGQLRIM DYNEAQHEHS bmy_05379T0/1-1091 PDSVGQLRIM DYNEAQHEHS BACU016187/1-1016 PDSVGQLRIM DYNEAQHEHS