KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 16:30:32 2014 Check: 00 ..
Name: ENSBTAP00000006842/1-1160 Len: 1170 Check: 9786 Weight: 1.00
Name: ENSTTRP00000013668/1-1168 Len: 1170 Check: 2674 Weight: 1.00
Name: bmy_05379T0/1-1091 Len: 1170 Check: 7280 Weight: 1.00
Name: BACU016187/1-1016 Len: 1170 Check: 445 Weight: 1.00
//
1 50
ENSBTAP00000006842/1-1160 MAQQANIGEL LSMLDSPLLS VRDDVTTVFK ENLNSDRGPM LVNTLVDYYL
ENSTTRP00000013668/1-1168 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL
bmy_05379T0/1-1091 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL
BACU016187/1-1016 MAQQANIGEL LSMLDSPMLS VRDDVTAVFK ENLNSDRGPM LVNTLVDYYL
51 100
ENSBTAP00000006842/1-1160 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYV GKAASRLSAL LLLGHVVRLQ
ENSTTRP00000013668/1-1168 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYV GKAASRLSTL SLLGHVVRLQ
bmy_05379T0/1-1091 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYM GKAASRLSTL SLLGHVVRLQ
BACU016187/1-1016 ETNSQPVLHI LTTLQEPHDK HLLDKMNEYM GKAASRLSTL SLLGHVVRLQ
101 150
ENSBTAP00000006842/1-1160 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH
ENSTTRP00000013668/1-1168 PSWKHKLSQA PLLPSLLKCL KVDTDAIVLT TGALVLVTVL PMIPQSGKQH
bmy_05379T0/1-1091 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH
BACU016187/1-1016 PSWKHKLSQA PLLPSLLKCL KMDTDVIVLT TGVLVLITML PMIPQSGKQH
151 200
ENSBTAP00000006842/1-1160 LHDFFDIFGR LSSWCLKKPG HVTEVYLVHL HASVYALFHR LYGMYPCNFV
ENSTTRP00000013668/1-1168 LRDFFDIFGR LSSWCLKKPG HVTEIYLVHL HASVYALFHR LYGMYPCNFV
bmy_05379T0/1-1091 LHDFFDIFGR LSSWCLKKPG KDLLLYL--- ---------- -----SC---
BACU016187/1-1016 LHDFFDIFGR LSSWCLKKPG HVTEIYLVHL HASVYALFHR LYGMYPCNFV
201 250
ENSBTAP00000006842/1-1160 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL
ENSTTRP00000013668/1-1168 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL
bmy_05379T0/1-1091 ---------- ---------- ---------- ---------- ---PTKWKRL
BACU016187/1-1016 SFLRSHYSMK ENLETFEEVV KPMMEHVRIH PELVTGSKDH ELDPRRWKRL
251 300
ENSBTAP00000006842/1-1160 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVSASSYVDT
ENSTTRP00000013668/1-1168 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVTASSYVDT
bmy_05379T0/1-1091 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRLA DVTASSYVDT
BACU016187/1-1016 ETHDVVIECA KISLDPTEAS YEDGYSVSHQ ISARFPHRSA DVTASSYVDT
301 350
ENSBTAP00000006842/1-1160 QNSYGNATST PYSTSRLT-L NTPGQLPQTL SSPSTRLLAE PPQATLWSPS
ENSTTRP00000013668/1-1168 QNSYGSATST PHSTSRLMLL NTPGQLPQTL SSLSTRLLTE PPQATLWSPS
bmy_05379T0/1-1091 QNSYGSATST PHSTSRLMLL NTPGQLPQTL SSLSTRLLTE PPQATLWSPS
BACU016187/1-1016 QNSY------ ---------- ---------- ---------- ----------
351 400
ENSBTAP00000006842/1-1160 AVCGMTTPPT SPGNVPPDLS HPYSKVFGTT AGGKGTPLGT PATSPPPAPP
ENSTTRP00000013668/1-1168 VVCGMTTPPT SPGNVPPDLS HPYSKVFGTA AGRKGTPLGT PATSPPPAPP
bmy_05379T0/1-1091 VVCGMTTPPT SPGNVPPDLS HPYSKVFGT- AGRKGTPLGT PATSPPPAPP
BACU016187/1-1016 ---------- ---------- ---------- ---------- ----------
401 450
ENSBTAP00000006842/1-1160 CHSDDCVHLS LPQ--ATAPK KEERTDSARP CLHRQPHVPN DRGLEELHGG
ENSTTRP00000013668/1-1168 CHSDDYAHIS LPT-MATAP- KEERTDSARP CLHRQHHLPN DRGLEELPGS
bmy_05379T0/1-1091 CHSDDYVHIS LPQAMATAPK KEERTDXARP CLHRQHHLPN DRGLEELPGS
BACU016187/1-1016 ---------- ---------- ---------- ---------- ----EELPGS
451 500
ENSBTAP00000006842/1-1160 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLVPR
ENSTTRP00000013668/1-1168 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR
bmy_05379T0/1-1091 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR
BACU016187/1-1016 KGSVTLSDLP GFLGDLASEE DSIEKDKEEA AISKELSEIT TADAEPLAPR
501 550
ENSBTAP00000006842/1-1160 GGFDSPFYRD SLPGCPRKTL SASSSTQGTS ANPEPLNSSL DKSGPDTPKQ
ENSTTRP00000013668/1-1168 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSAL DRLGPDTPKQ
bmy_05379T0/1-1091 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSTL DRLGPDTPKQ
BACU016187/1-1016 GGFDSPFYRD SLPGCPRKTH SAVSSAQGTG ANPEPLNSTL DRLGPDTPKQ
551 600
ENSBTAP00000006842/1-1160 AFTPIDLPCG GTGESPAGNR ERQASLEASI LTPSPCKIPP QRGVGFGSGQ
ENSTTRP00000013668/1-1168 AFTPIDLPCG GAEESPAGDR ERQASLESSI LTPSPFKIPP QRGVGFGGGQ
bmy_05379T0/1-1091 AFTPIDLPCG GAEESPAGDR ERQASLESSI LTPSPFKIPP QRGVGFGSGQ
BACU016187/1-1016 AFTPIELPCG GAEESPAGDR ERQASLESGI LAPSPFKIPP QRGVGFGSGQ
601 650
ENSBTAP00000006842/1-1160 PPPYDHLFEV ALPKTAHHFV SKKTEELLKK AKGSAEEDFT PSASPMEVLD
ENSTTRP00000013668/1-1168 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDFM PSASPMEVLD
bmy_05379T0/1-1091 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDCT PSASPMEVLD
BACU016187/1-1016 PPPYDHLFEV ALPKTARHFV SKKTEGLLKK AKGNTEEDCT PSASPMEVLD
651 700
ENSBTAP00000006842/1-1160 RLIQQGADVH SKELNRLSLP SKSVDWTHFG GSPPSDEICT LRNQLLLLHN
ENSTTRP00000013668/1-1168 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN
bmy_05379T0/1-1091 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN
BACU016187/1-1016 RLIQQGADAH SKELNRLSLP SKSVDWTHFG GSAPSDETRS LRNQLLLLHN
701 750
ENSBTAP00000006842/1-1160 QLLYERFKRQ QHALRNRRLL RKVIRASALE EHNAAMKDQL KLQEKDIQIW
ENSTTRP00000013668/1-1168 QLLYERFKRQ QHALRNRRLL RKVTRAAALE EHNAAMKDQL KLQEKDIQIW
bmy_05379T0/1-1091 QLLYERFKRQ QHALRNRRLL RKVIRAAALE EHNAAMKDQL KLQEKDIQIW
BACU016187/1-1016 QLLYERFKRQ QHALRNRRLL RKVIRAAALE EHNAAMKDQL KLQEKDIQIW
751 800
ENSBTAP00000006842/1-1160 KISLQKEQAR YNQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL
ENSTTRP00000013668/1-1168 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL
bmy_05379T0/1-1091 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL
BACU016187/1-1016 KVSLQKEQAR YSQLQEQRDT VVTQLHSQIR QLQHDREEFY NQSQELQTKL
801 850
ENSBTAP00000006842/1-1160 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR
ENSTTRP00000013668/1-1168 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR
bmy_05379T0/1-1091 EDCRNMIAEL RIELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR
BACU016187/1-1016 EDCRNMIAEL RVELKKANSK VCHTELLLSQ VSQKLSNSES VQQQMEFLNR
851 900
ENSBTAP00000006842/1-1160 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KAAYRKELEK NRSHVLQQNQ
ENSTTRP00000013668/1-1168 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ
bmy_05379T0/1-1091 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ
BACU016187/1-1016 QLLVLGEVNE LYLEQLQNKH SDTTKEVEMM KTAYRKELEK NRSHVLQQNQ
901 950
ENSBTAP00000006842/1-1160 RLDTCQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA
ENSTTRP00000013668/1-1168 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA
bmy_05379T0/1-1091 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA
BACU016187/1-1016 RLDTAQKRIL ELESHLAKKD HLLLEQKKYL EDVKLQARGQ LQAAESRYEA
951 1000
ENSBTAP00000006842/1-1160 QKRITQVFEL EILDLYGKLE KDGLLKKLEE QKPEAAEAAE ERLDYCQDGC
ENSTTRP00000013668/1-1168 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC
bmy_05379T0/1-1091 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC
BACU016187/1-1016 QKRITQVFEL EILDLYGRLE KDGLLKKLEE EKTEAAEAAE ERLDCCRDGC
1001 1050
ENSBTAP00000006842/1-1160 SDSVTGH-NE EAPGRNGETK PSRPGGA--- ---RGGGGGG GRGGGSSSEL
ENSTTRP00000013668/1-1168 SDSVTGHNNE EASGPNGETK PPRPGGARGG SGSRGGGGGG SSSSSGGSEL
bmy_05379T0/1-1091 SDPVTGHNNE EASGPNGETK PPRP------ --------GG SSSSSGGSEL
BACU016187/1-1016 SDSVTGHNNE EASGPNGETK PPRF------ --------GG SSSSSGGSEL
1051 1100
ENSBTAP00000006842/1-1160 STPEKPPNPR AGPFSSRWET VVGEPTSGTP TTVGSLPSSE SFLGMKAREL
ENSTTRP00000013668/1-1168 STPEKPPNPR VGPCSSRWET AVGEPTTGIP MTVGSLPSSK SFLGMKAREL
bmy_05379T0/1-1091 STPEKPPNPR MGPLSSRWET AVGEPTAGIP VTVGSLPSSK SFLGMKAREL
BACU016187/1-1016 STPEKPPNPR VGPLSSRWET AVGEPTAGIP VTVGSLPSSK SFLGMKAREL
1101 1150
ENSBTAP00000006842/1-1160 FRNKSESQCD EDGLTVGSLS ETLKTELGKD SGVEARAPLT LDGPLLPAPK
ENSTTRP00000013668/1-1168 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPPLN LDGPQPPPPK
bmy_05379T0/1-1091 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPPLN LDGPQPPPPK
BACU016187/1-1016 FRNKSESQCD EDSLTSSSLS ETLKTELGKD SGVEAKPSLN LDGPQPPPPK
1151 1200
ENSBTAP00000006842/1-1160 PDSVGQLRIM DYNEAQLEHS
ENSTTRP00000013668/1-1168 PDSVGQLRIM DYNEAQHEHS
bmy_05379T0/1-1091 PDSVGQLRIM DYNEAQHEHS
BACU016187/1-1016 PDSVGQLRIM DYNEAQHEHS