KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:34 2014 Check: 00 .. Name: ENSTTRP00000002522/1-1482 Len: 1483 Check: 8830 Weight: 1.00 Name: ENSP00000342434/1-1483 Len: 1483 Check: 7877 Weight: 1.00 Name: ENSBTAP00000006848/1-1482 Len: 1483 Check: 5720 Weight: 1.00 Name: bmy_00364T0/1-1263 Len: 1483 Check: 1172 Weight: 1.00 Name: BACU012027/1-1371 Len: 1483 Check: 9622 Weight: 1.00 // 1 50 ENSTTRP00000002522/1-1482 MAPLLGRKPF PLVKPLPGEE PLFTIAHTQE AFRTREEYEA RLERYSERIW ENSP00000342434/1-1483 MAPLLGRKPF PLVKPLPGEE PLFTIPHTQE AFRTREEYEA RLERYSERIW ENSBTAP00000006848/1-1482 MAPLLGRKPF PLVKPLPGEE PLFTIAHTQE AFRTREEYEA RLERYSERIW bmy_00364T0/1-1263 MAPLLGRK-- ---------- ---------- ---------- ---------- BACU012027/1-1371 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002522/1-1482 TCKSTGSSQL THKEAWEEEQ EVAELXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342434/1-1483 TCKSTGSSQL THKEAWEEEQ EVAELLKEEF PAWYEKLVLE MVHHNTASLE ENSBTAP00000006848/1-1482 TCKSTGSSQL THKEAWEEEQ EVAELLKEEF PAWYEKLVLE MVHHNTASLE bmy_00364T0/1-1263 ---------- ---------- ---------- ---------- ---------- BACU012027/1-1371 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000002522/1-1482 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342434/1-1483 KLVDTAWLEI MTKYAVGEEC DFEVGKEKML KVKIVKIHPL EKVDEEATEK ENSBTAP00000006848/1-1482 KLVDTAWLEI MTKYAVGEEC DFEVGKEKML KVRIVKIHPL EKVDEEATEK bmy_00364T0/1-1263 ---------- ---------- ---------- ---------- ---------- BACU012027/1-1371 ---------- MTKYAVGEEC DFEVGKEKML KVRIVKIHPL EKVDEEATEK 151 200 ENSTTRP00000002522/1-1482 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XDRARRSPRK ENSP00000342434/1-1483 KSDGACDSPS SDKENSSQIA QDHQKKETVV KEDEGRRESI NDRARRSPRK ENSBTAP00000006848/1-1482 KSDGSCDSPS SDKENSSQIA QDHQKKEAVG KEEEGRRESI NDRARRSPRK bmy_00364T0/1-1263 ---------- ---------- ---------- ---------- ---------- BACU012027/1-1371 KSDGACDSPS SDKENSSQIA QDHQ-KEAIV KEDEGRRESI NDRARRSPRK 201 250 ENSTTRP00000002522/1-1482 LPTSLKKGER KWAPPKFLPH KYDVKLQNED KIISNVPADS LIRTERPPNK ENSP00000342434/1-1483 LPTSLKKGER KWAPPKFLPH KYDVKLQNED KIISNVPADS LIRTERPPNK ENSBTAP00000006848/1-1482 LPTSLKKGER KWAPPKFLPH KYDVKLQDED KIISNVPADS LIRTERPPNK bmy_00364T0/1-1263 -PFPL----- ---------- ---------- -IISNVPADS LIRTERPPNK BACU012027/1-1371 LPTSLKKGER KWAPPKFLPH KYDVKLQNED KIISNVPADS LIRTERPPNK 251 300 ENSTTRP00000002522/1-1482 EILRYFIRHN ALRAGTGENA PWVVEDELVK KYSLPSKFSD FLLDPYKYMT ENSP00000342434/1-1483 EIVRYFIRHN ALRAGTGENA PWVVEDELVK KYSLPSKFSD FLLDPYKYMT ENSBTAP00000006848/1-1482 EILRYFIRHN ALRAGTGENA PWVVEDELVK KYSLPSKFSD FLLDPYKYMT bmy_00364T0/1-1263 EILRYFIRHN ALRAGTGENA PWVVEDELVK KYSLPSKFSD FLLDPYKYMT BACU012027/1-1371 EILRYFIRHN ALRAGTGENA PWVVEDELVK KYSLPSKFSD FLLDPYKYMT 301 350 ENSTTRP00000002522/1-1482 LNPSTKRKNT GSPDRKPSKK SKTDNSSLSS PLNPKLWCHV HLKKSLNGSP ENSP00000342434/1-1483 LNPSTKRKNT GSPDRKPSKK SKTDNSSLSS PLNPKLWCHV HLKKSLSGSP ENSBTAP00000006848/1-1482 LNPSTKRKNT GSPDRKPSKK SKTDNSSLSS PLNPKLWCHV HLKKSLNGSP bmy_00364T0/1-1263 LNPSTKRKNT GSPDRKPSKK SKTDNSSLSS PLNPKLWCHV HLKKSLNGSP BACU012027/1-1371 LNPSTKRKNT GSPDRKPSKK SKTDNSSLSS PLNPKLWCHV HLKKSLNGSP 351 400 ENSTTRP00000002522/1-1482 LKVKNSKNSK SPEEHLEEVM KMMSPNKLHA NFHIPKKGPP GKKSGKHSDK ENSP00000342434/1-1483 LKVKNSKNSK SPEEHLEEMM KMMSPNKLHT NFHIPKKGPP AKKPGKHSDK ENSBTAP00000006848/1-1482 LKVKNSKNSK SPQEHLEEVM KMMSPNKLHA NFHIPKKGPP GKKSGKHSDK bmy_00364T0/1-1263 LKVKNSKNSK SPEEHLEEVM KMMSPNKLHA NFHIPKKGPP GKKSGKHSDK BACU012027/1-1371 LKVKNSKNSK SPEEHLEEVM KMMSPNKLHA NFHIPKKGPP GKKSGKHSDK 401 450 ENSTTRP00000002522/1-1482 PLKAKGRSKG ILNGQKSTGN SKSPKKGLKT PKTKMKQMTL LDMAKGTQKV ENSP00000342434/1-1483 PLKAKGRSKG ILNGQKSTGN SKSPKKGLKT PKTKMKQMTL LDMAKGTQKM ENSBTAP00000006848/1-1482 PLKAKGRGKG ILNGQKSTGN SKSPKKGLKT PKTKMKQMTL LDMAKGTQKV bmy_00364T0/1-1263 PLKAKGRSKG ILNGQKSTGN SKSPKKGLKT PKTKMKQMTL LDMAKGTQKV BACU012027/1-1371 PLKAKGRSKG ILNGQKSTGN SKSPKKGLKT PKTKMKQMTL LDMAKGTQKV 451 500 ENSTTRP00000002522/1-1482 TRAPRNSGGT PRSSSKPHKH LPPAALHLIA YYKENKDRED KKSALSCVIS ENSP00000342434/1-1483 TRAPRNSGGT PRTSSKPHKH LPPAALHLIA YYKENKDRED KRSALSCVIS ENSBTAP00000006848/1-1482 TRAPRNSGGT PRSSSKPHKH LPPAALHLIA YYKENKDRED KKSALSCVIS bmy_00364T0/1-1263 TRAPRNSGGT PRSSSKPHKH LPPAALHLIA YYKENKDRED KKSALSCVIS BACU012027/1-1371 TRAPRNSGGT PRSSSKPHKH LPPAALHLIA YYKENKDRED KKSALSCVIS 501 550 ENSTTRP00000002522/1-1482 KTARLLSSED RARLPEELRS IVQKRFELLE HKKRWASMSE EQRKEYLKKK ENSP00000342434/1-1483 KTARLLSSED RARLPEELRS LVQKRYELLE HKKRWASMSE EQRKEYLKKK ENSBTAP00000006848/1-1482 KTARLLSSED RARLPEELRS IVQKRFELLE HKKRWASMSE EQRKEYLKKK bmy_00364T0/1-1263 KTARLLSSED RARLPEELRS IVQKRFELLE HKKRWASMSE EQRKEYLKKK BACU012027/1-1371 KTARLLSSED RARLPEELRS IVQKRFELLE HKKRWASMSE EQRKEYLKKK 551 600 ENSTTRP00000002522/1-1482 REELKEKLKE KAKERREKEM LEKLEKQKRY EDQELTGKNL PTFKLVDTPE ENSP00000342434/1-1483 REELKKKLKE KAKERREKEM LERLEKQKRY EDQELTGKNL PAFRLVDTPE ENSBTAP00000006848/1-1482 REELKEKLKE KAKERREKEM LERLEKQKRY EDQELTGKTL PTFKLVDTPE bmy_00364T0/1-1263 REELKEKLKE KAKERREKEM LEKLEKQKRY EDQELTGKNL PTFKLVDTPE BACU012027/1-1371 REELKEKLKE KAKERREKEM LEKLEKQKRY EDQELTGKNL PTFKLVDTPE 601 650 ENSTTRP00000002522/1-1482 GLPNTLFGDV AMVVEFLSCY SGLLLPDAQY PITAVSLMEA LSAEKGGFLY ENSP00000342434/1-1483 GLPNTLFGDV AMVVEFLSCY SGLLLPDAQY PITAVSLMEA LSADKGGFLY ENSBTAP00000006848/1-1482 GLPNTLFGDV AMVVEFLSCY SGLLLPDAQY PITAVSLMEA LSAEKGGFLY bmy_00364T0/1-1263 GLPNTLFGDV AMVVEFLSCY SGLLLPDAQY PITAVSLMEA LSAEKGGFLY BACU012027/1-1371 GLPNTLFGDV AMVVEFLSCY SGLLLPDAQY PITAVSLMEA LSAEKGGFLY 651 700 ENSTTRP00000002522/1-1482 LNRVLVILLQ TLLQDEIAED YGELGMKLSE IPLTLHSVSE LVRLCLRKSD ENSP00000342434/1-1483 LNRVLVILLQ TLLQDEIAED YGELGMKLSE IPLTLHSVSE LVRLCLRRSD ENSBTAP00000006848/1-1482 LNRVLVILLQ TLLQDEIAED YGELGMKLSE IPLTLHSVSE LVRLCLRKSD bmy_00364T0/1-1263 LNRVLVILLQ TLLQDEIAED YGELGMKLSE IPLTLHSVSE LVRLCLRKSD BACU012027/1-1371 LNRVLVILLQ TLLQDEIAED YGELGMKLSE IPLTLHSVSE LVRLCLRKSD 701 750 ENSTTRP00000002522/1-1482 IQEESEGSDT DDNKDSAPFE DNEVQDEFLE KLETSEFFEL TSEEKLQILT ENSP00000342434/1-1483 VQEESEGSDT DDNKDSAAFE DNEVQDEFLE KLETSEFFEL TSEEKLQILT ENSBTAP00000006848/1-1482 VQEESEGSDA DDNKDSASFE DNEVQDEFLE KLETSEFFEL TSEEKLQILT bmy_00364T0/1-1263 IQEESEGSDT DDNKDSAPFE DNEVQDEFLE KLETSEFFEL TSEEKLQILT BACU012027/1-1371 IQEESEGSDT DDNKDSAPFE DNEVQDEFLE KLETSEFFEL TSEEKLQILT 751 800 ENSTTRP00000002522/1-1482 ALCHRILMTY SVQDHMETRQ QMSAELWKER LAVLKEENDK KRAEKQKRKE ENSP00000342434/1-1483 ALCHRILMTY SVQDHMETRQ QMSAELWKER LAVLKEENDK KRAEKQKRKE ENSBTAP00000006848/1-1482 ALCHRILMTY SVQDHMETRQ QMSAELWKER LAVLKEENDK KRAEKQKRKE bmy_00364T0/1-1263 ALCHRILMTY SVQDHMETRQ QMSAELWKER LAVLKEENDK KRAEKQKRKE BACU012027/1-1371 ALCHRILMTY SVQDHMETRQ QMSAELWKER LAVLKEENDK KRAEKQKRKE 801 850 ENSTTRP00000002522/1-1482 MEARNKENGK EENGLGKADR KKEVVKFEPQ VDMEAEDMIS AVKSRRLLAI ENSP00000342434/1-1483 MEAKNKENGK VENGLGKTDR KKEIVKFEPQ VDTEAEDMIS AVKSRRLLAI ENSBTAP00000006848/1-1482 MEARNKENGK EENGLGKADR KKEVVKFEPQ VDTEAEDMIS AVKSRRLLAI bmy_00364T0/1-1263 MEARNKENGK EENGLGKADR KKEVVKFEPQ VDMEAEDMIS AVKSRRLLAI BACU012027/1-1371 MEARNKENGK EENGLGKADR KKEVVKFEPQ VDMEAEDMIS AVKSRRLLAI 851 900 ENSTTRP00000002522/1-1482 QAKKXXXXXX XXXXXKLERE AEEERIRKHK AAAEKAFQEG IAKAKLVMRR ENSP00000342434/1-1483 QAKKEREIQE REMKVKLERQ AEEERIRKHK AAAEKAFQEG IAKAKLVMRR ENSBTAP00000006848/1-1482 QAKKEREIQE REMKVKLERE AEEERIRKHK AAAEKAFQEG IAKAKLVMRR bmy_00364T0/1-1263 QAKKEREIQE REMKVKLERE AEEERIRKHK AAAEKAFQEG IAKAKLVMRR BACU012027/1-1371 QAKKEREIQE REMKVKLERE AEEERIRKHK AAAEKAFQEG IAKAKLVMRR 901 950 ENSTTRP00000002522/1-1482 TPIGTDRNHN RYWLFSDEVP GLFIEKGWVH DSIDYRFSHH RKDRADSPDE ENSP00000342434/1-1483 TPIGTDRNHN RYWLFSDEVP GLFIEKGWVH DSIDYRFNHH CKDHTVSGDE ENSBTAP00000006848/1-1482 TPIGTDRNHN RYWLFSDEVP GLFIEKGWVH DSIDYRFSHH RKDHADSPDE bmy_00364T0/1-1263 TPIGTDRNHN RYWLFSDEVP GLFIEKGWVH DSIDYRFNHH RKDRADSADE BACU012027/1-1371 TPIGTDRNHN RYWLFSDEVP GLFIEKGWVH DSIDYRFIHH RKDRADSADE 951 1000 ENSTTRP00000002522/1-1482 DYCPRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFLCDSQKEL ENSP00000342434/1-1483 DYCPRSKKAN LGKNASMNTQ HGTATEVAVE TTTPKQGQNL WFLCDSQKEL ENSBTAP00000006848/1-1482 DYCPRSKKAN LGKNVSTNMH HGPAAEIAVE TTVPKQGQNL WFLCDSQKEL bmy_00364T0/1-1263 DYCPRSKKAN LGKNVSMSTQ HGPATEIAVE TTIPKQGQNL WFLCDSQKEL BACU012027/1-1371 DYCPRSKKAN LGKNVSMNTQ HGPATEIAVE TTIPKQGQNL WFLCDSQKEL 1001 1050 ENSTTRP00000002522/1-1482 DELLNCLHPQ GIRESQLKER LEKRYQDIIH SIHLARKPNL GLKSCDGNQE ENSP00000342434/1-1483 DELLNCLHPQ GIRESQLKER LEKRYQDIIH SIHLARKPNL GLKSCDGNQE ENSBTAP00000006848/1-1482 DELLNCLHPQ GIRESQLKER LEKRYQDIIH SIHLARKPNL GLKSCDGNQE bmy_00364T0/1-1263 DELLNCLHPQ GIRESQLKER LEKRYQDIIH SIHLARKPNL GLKSCDGNQE BACU012027/1-1371 DELLNCLHPQ GIRESQLKER LEKRYQDIIH SIHLARKPNL GLKSCDGNQE 1051 1100 ENSTTRP00000002522/1-1482 LLNFLRSDLI EVATRLQKGG LGYVEETSEF EARVISLEKL KDFGECVIAL ENSP00000342434/1-1483 LLNFLRSDLI EVATRLQKGG LGYVEETSEF EARVISLEKL KDFGECVIAL ENSBTAP00000006848/1-1482 LLNFLRSDLI EVATRLQKGG LGYVEETSEF EARVISLEKL KDFGECVIAL bmy_00364T0/1-1263 LLNFLRSDLI EVATRLQKGG LGYVEETSEF EARVISLEKL KDFGECVIAL BACU012027/1-1371 LLNFLRSDLI EVATRLQKGG LGYVEETSEF EARVISLEKL KDFGECVIAL 1101 1150 ENSTTRP00000002522/1-1482 QASVIKKFLQ GFMAPKQKRR KLQSEDSAKT EEVDEEKKMA EEAKVASALE ENSP00000342434/1-1483 QASVIKKFLQ GFMAPKQKRR KLQSEDSAKT EEVDEEKKMV EEAKVASALE ENSBTAP00000006848/1-1482 QASVIKKFLQ GFMAPKQKRR KLQSEDSAKT EEVDEEKKMA EEAKVASALE bmy_00364T0/1-1263 QASVIKKFLQ GFMAPKQKRR KLQSEDSAKT EEVDEEKKMA EEAKVASALE BACU012027/1-1371 QASVIKKFLQ GFMAPKQKRR KLQSEDSAKT EEVDEEKKMA EEAKVASALE 1151 1200 ENSTTRP00000002522/1-1482 KWKTAIREAQ TFSRMHVLLG MLDACIKWDM SAENARCKVC RKKGEDDKLI ENSP00000342434/1-1483 KWKTAIREAQ TFSRMHVLLG MLDACIKWDM SAENARCKVC RKKGEDDKLI ENSBTAP00000006848/1-1482 KWKTAIREAQ TFSRMHVLLG MLDACIKWDM SAENARCKVC RKKGEDDKLI bmy_00364T0/1-1263 KWKTAIREAQ TFSRMHVLLG MLDACIKWDM SAENARCKVC RKKGEDDKLI BACU012027/1-1371 KWKTAIREAQ TFSRMHVLLG MLDACIKWDM SAENARCKVC RKKGEDDKLI 1201 1250 ENSTTRP00000002522/1-1482 LCDECNKAFH LFCLRPALYE VPDGEWQCPA CQPATARRNS RGRNYTEESA ENSP00000342434/1-1483 LCDECNKAFH LFCLRPALYE VPDGEWQCPA CQPATARRNS RGRNYTEESA ENSBTAP00000006848/1-1482 LCDECNKAFH LFCLRPALYE VPDGEWQCPA CQPATARRNS RGRNYTEESA bmy_00364T0/1-1263 LCDECNKAFH LFCLRPALYE VPDGEWQCPA CQPATARRNS RGRNYTEESA BACU012027/1-1371 LCDECNKAFH LFCLRPALYE VPDGEWQCPA CQPATARRNS RGRNYTEESA 1251 1300 ENSTTRP00000002522/1-1482 SEDSEDDESN -EEEEEEEEE GEEDYEVAGL RLRPRKTVRG KQGVIAPAAR ENSP00000342434/1-1483 SEDSEDDESD EEEEEEEEEE EEEDYEVAGL RLRPRKTIRG KHSVIPPAAR ENSBTAP00000006848/1-1482 SEDSEDDESN -EEEEEEEEE EEEDYEVAGL RLRPRKTVRG KQGVIPPTAR bmy_00364T0/1-1263 SEDSEDDESN -EEEEEEEEE GEEDYEVAGL RLRPRKTVRG KQXVIPTAAR BACU012027/1-1371 SEDSEDDESN -EEEEEEEEE GEEDYEVAGL RLRPRKTVRG KQGVIPPAAR 1301 1350 ENSTTRP00000002522/1-1482 PGRRPGKKPH PTRRSRPKAP PVDEAEVDEL VLQTKRSSRR QSLELQKCEE ENSP00000342434/1-1483 SGRRPGKKPH STRRSQPKAP PVDDAEVDEL VLQTKRSSRR QSLELQKCEE ENSBTAP00000006848/1-1482 PGRRPGKKPH PARRARPKAP PADDMEVDEL VLQTKRSSRR QSLELQKCEE bmy_00364T0/1-1263 PGRRPGKKPH PTRRSRPKVP PVDDAEVDEL VLQTKRSSRR QSLELQKCEE BACU012027/1-1371 PGRRPGKKPH PTRRSRPKAP PVDEAEVDEL VLQTKRSSRR QSLELQKCEE 1351 1400 ENSTTRP00000002522/1-1482 ILHKIVKYRF SWPFREPVTR DEAEDYYDVI THPMDFQTMQ NKCSCGSYRS ENSP00000342434/1-1483 ILHKIVKYRF SWPFREPVTR DEAEDYYDVI THPMDFQTVQ NKCSCGSYRS ENSBTAP00000006848/1-1482 ILHKIVKYRF SWPFREPVTR DEAEDYYDII THPMDFQTMQ SKCSCGGYRS bmy_00364T0/1-1263 ILHKIVKYRF SWPFREPVTR DEAEDYYDVI THPMDFQTMQ NKCSCGSYRS BACU012027/1-1371 ILHKIVKYRF SWPFREPVTR DEAEDYYDVI THPMDFQTMQ NKCSCGSYRS 1401 1450 ENSTTRP00000002522/1-1482 VQEFLTDMKQ VFTNAELYNC RGSHVLNCMV KTEQCLMALL HKHLPGHPYV ENSP00000342434/1-1483 VQEFLTDMKQ VFTNAEVYNC RGSHVLSCMV KTEQCLVALL HKHLPGHPYV ENSBTAP00000006848/1-1482 VQEFLADLKQ VFTNAELYNC RGSHVLSCMV KTEQCLVALL HKHLPGHPYV bmy_00364T0/1-1263 VQEFLTDXKQ VFTNAELYNC RGSHVLNCMV KTEQCLMALL HKHLPGHPYV BACU012027/1-1371 VQEFLTDMKQ VFTNAELYNC RGSHVLNCMV KTEQCLMALL HKHLPGHPYV 1451 1500 ENSTTRP00000002522/1-1482 RRKRKKFPDR LAEDEGDSEP EPVGQSRGRR QKK ENSP00000342434/1-1483 RRKRKKFPDR LAEDEGDSEP EAVGQSRGRR QKK ENSBTAP00000006848/1-1482 RRKRKKFPDR LAEDEGDSEP EPVGQSRGRR QKK bmy_00364T0/1-1263 RRKRKKFPDR LAEDEGDSEP EPVGQSRGRR QKK BACU012027/1-1371 RRKRKKFPDR LAEDEGDSEP EPVGQSRGRR QKK