KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:37 2014 Check: 00 .. Name: BACU001078/1-327 Len: 593 Check: 9127 Weight: 1.00 Name: ENSP00000311429/1-591 Len: 593 Check: 1942 Weight: 1.00 Name: ENSBTAP00000006867/1-589 Len: 593 Check: 9259 Weight: 1.00 Name: bmy_10376T0/1-454 Len: 593 Check: 332 Weight: 1.00 Name: ENSTTRP00000009688/1-585 Len: 593 Check: 2081 Weight: 1.00 // 1 50 BACU001078/1-327 ---------- ---------- ---------- -----ADVQV QLISKGQPNP ENSP00000311429/1-591 MWERLNCAAE DFYSRLLQKF NEEKKGIRKD PFLYEADVQV QLISKGQPNP ENSBTAP00000006867/1-589 MWSGANRAAE EFYAGLLQEF DENKKGIRKD PFIYEADIQV QLISKGQPNP bmy_10376T0/1-454 MWSRTNRAAE EFYARLLQEF DEEKKGICKD PFIYEADVQV QLISKGQPNP ENSTTRP00000009688/1-585 MWARTNRAAE EFYAHLLQ-F DEEKK-IC-D PFIXXADVQV QLISKGQPNP 51 100 BACU001078/1-327 LKNILNENDT VFIVEKVKRK KQ-------- ---------- ---------- ENSP00000311429/1-591 LKNILNENDI VFIVEKVPLE KEETSHIEEL QSEETAISDF STGENVGPLA ENSBTAP00000006867/1-589 LKNILHENET IFIVEKVPLE KEEPSPIEEL QSEDTAISDL STGENVGLLA bmy_10376T0/1-454 LKNILNENDT VFIVEKVLLE KEETSHVEEL QSEETAISDF STGENVGPLA ENSTTRP00000009688/1-585 LKNILNENDT VFIVEKVPLE KEETSHVEEL QSEETAISDF STGENVGPPA 101 150 BACU001078/1-327 ---------- ---VMLKNYN LKKLLFQISL LVKMLDHL-- ---------- ENSP00000311429/1-591 LPVGKARQLI GLYTMAHNPN MTHL--KINL PVTALPPLWV RCDSSDPEGT ENSBTAP00000006867/1-589 LPIGRARQLI GFYTMAHNPN MTHL--KINR PVTALPPLWV RCDGSDPEGI bmy_10376T0/1-454 LPVGRARQLI GLYTMAHNPN MTHL--KINR PVTALPALWV RCDGSDPEGT ENSTTRP00000009688/1-585 LPVGRARQLI GLYTMAHNPN MTHL--KINR PVTALPPLWV RCDGSDPEGT 151 200 BACU001078/1-327 ---------- --------LY QLGEPADKNY SVNLEDLKNS HKKRHHLSTL ENSP00000311429/1-591 CWLGAELITT NNSITGIVLY VVSCKADKNY SVNLENLKNL HKKRHHLSTV ENSBTAP00000006867/1-589 SWLGAELIST SSNITGIVLY MVTCKVDKNY SVNLEDLKKS HKKRHHLSTL bmy_10376T0/1-454 CWLGAELIIT NNIITGIVLC MVTCKADKNY SVNLEDLKNS HKKRHHLST- ENSTTRP00000009688/1-585 CWLGAELIIT NNIITGIVLC MVTCKADKNY SVNLEDLKNS HKKRHHLSTL 201 250 BACU001078/1-327 TASGFAQYEL FKSTALDDTV AASQTTITLD ISWSPVDEIL QIPPLSSTAT ENSP00000311429/1-591 TSKGFAQYEL FKSSALDDTI TASQTAIALD ISWSPVDEIL QIPPLSSTAT ENSBTAP00000006867/1-589 TASGFARYEL FKSTALDDTV AASQTTITLD ISWSPVDEIL QTPPLSSTAT bmy_10376T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009688/1-585 TASGFAQYEL FKSTALDDTV AASQTTITLD ISWSPVDEIL QIPPLSSTAT 251 300 BACU001078/1-327 L--------- ---------- ---------- ---------- ---------- ENSP00000311429/1-591 LNIKVESGEP RGPLNHLYRE LKFLLVLADG LRTGVTEWLE PLEAKSAVEL ENSBTAP00000006867/1-589 LNIKVESGEP RGPLSQLHRE LKFLLVLADG LRTGVTEWPE PLEAKSAVEL bmy_10376T0/1-454 -NIKVELGEP RGPLNHLHRQ LKFLLVLADG LRTGVTEWPE SLEAKSAVEL ENSTTRP00000009688/1-585 LNIKVELGEP RGPLNHLHRQ LKFLLFIADG LRTGVTEWPE SLEAKSAVEL 301 350 BACU001078/1-327 ---------- ---------- ---------- ---------- ---------- ENSP00000311429/1-591 VQEFLNDLNK LDGFGDSTKK DTEVETLKHD TAAVDRSVKR LFKVRSDLDF ENSBTAP00000006867/1-589 VQEFLNELSK LNEFGDSTKK DT--EIVKHD AAAVDGSIEC LLTVRGDLDF bmy_10376T0/1-454 VQEFLNDLNK LDEFGDSTKK TT--ETVKHD SAAVDRSMEC LLTVRGDLDF ENSTTRP00000009688/1-585 VQEFLNDLNK LDEFGDSTKK TT--ETVKHD SAAVDRSMEC LLTVRGDLDF 351 400 BACU001078/1-327 ---------- ---------- ---------- -------LHS GSNSLLSKLI ENSP00000311429/1-591 AEQLWCKMSS SVISYQDLVK CFTLIIQSLQ RGDIQPWLHS GSNSLLSKLI ENSBTAP00000006867/1-589 AEQLWCKMSS SVISYQDLVK CFSLVIQSLQ RGAIQPWLHS GSNSLLSKLI bmy_10376T0/1-454 AEQLWCKMSS SVISYQDL-- ---------- -------LHS GSNSLLSKLI ENSTTRP00000009688/1-585 AEQLWCKMSS SVVSYQDLVK CFTLIIQSLQ RGDIQPWL-S GSNSLLSKLI 401 450 BACU001078/1-327 HQSYHGTMDM VSLSGIVPVQ MLLEIGLDKL KKDYICFFIG QELASLNHLE ENSP00000311429/1-591 HQSYHGTMDT VSLSGTIPVQ MLLEIGLDKL KKDYISFFIG QELASLNHLE ENSBTAP00000006867/1-589 HQSYYGTMDT VSLSGTVPVQ MLLEIGLDKL KKDYICFFIG QELASLNHLE bmy_10376T0/1-454 HQSYHGTMDT VSLSGIVPVQ MLLEIGLDKL KKDYICFFI- ---------- ENSTTRP00000009688/1-585 HQSYYGTMDT VSLSGIVPVQ MLLEIGLDKL KKDYICFFIG QELASLNHLE 451 500 BACU001078/1-327 YFISPSVDTQ EQVHRVQKLH HILEIVVSCM LFIKPQHELL FSLTQSCIKF ENSP00000311429/1-591 YFIAPSVDIQ EQVYRVQKLH HILEILVSCM PFIKSQHELL FSLTQICIKY ENSBTAP00000006867/1-589 YFISPSVDTQ EQVHRVQKLH HILEIVVSCM LFIKPQHELL FSLTQSCIKY bmy_10376T0/1-454 ------VDTQ EQVHRVQKLH HILEIVVSCM LFIKPQHELL FSLTQSCIKF ENSTTRP00000009688/1-585 YFISASVDTQ EQVHRVQKLH HILEIVVSCM LFIKPQHELL FSLTQSCIKF 501 550 BACU001078/1-327 YEQNPLDEQH IFQLPVRPTA IKDLYQNEKP QKWRVEINSG QKKVKTVWQL ENSP00000311429/1-591 YKQNPLDEQH IFQLPVRPTA VKNLYQSEKP QKWRVEIYSG QKKIKTVWQL ENSBTAP00000006867/1-589 YEQNPLDEQH IFQLPVRPTA VKDLYQNEKP QKWRVEINSG QKKVKTVWQL bmy_10376T0/1-454 YEQNPLDEQH IFQLPVRPTA IKDLYQN--- ---------- ---------- ENSTTRP00000009688/1-585 YEQNPLDEQH IFQLPVRPTA IKDLYQNEKP QKWRVEINSG QKKVKTVWQL 551 600 BACU001078/1-327 SDSPPVDHLN LHKPGRDGL- ---------- ---------- --- ENSP00000311429/1-591 SDSSPIDHLN FHKPDFSELT LNGSLEERIF FTNMVTCSQV HFK ENSBTAP00000006867/1-589 SDSPPIDHLN FHRPDFSELT LSGSLEERIS FTNMVTCSQV HFK bmy_10376T0/1-454 ---------- ---------- ----LEERIS FTNMVTCSQV HFK ENSTTRP00000009688/1-585 SDSPPVDHLN FHRPDFSELT LNGSLEERIS FTNMVTCSQV HFK