KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:38 2014 Check: 00 .. Name: ENSTTRP00000008272/1-579 Len: 617 Check: 4940 Weight: 1.00 Name: ENSP00000227752/1-578 Len: 617 Check: 7198 Weight: 1.00 Name: ENSBTAP00000006870/1-574 Len: 617 Check: 9440 Weight: 1.00 Name: bmy_03283T0/1-583 Len: 617 Check: 9349 Weight: 1.00 // 1 50 ENSTTRP00000008272/1-579 ---------- ---------- ---------- ----MLPRLI VQLPALLSLL ENSP00000227752/1-578 ---------- ---------- ---------- ----MLPCLV VLLAALLSLR ENSBTAP00000006870/1-574 ---------- ---------- ---------- -WEALLP-LV LTLSFLLI-- bmy_03283T0/1-583 MLAPPTGGRR FQSQSRRAAT GGKHPGSGGC GWTRMLPRLI LQLAALLSLF 51 100 ENSTTRP00000008272/1-579 LGFRAHXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYGV ENSP00000227752/1-578 LGSDAHGTEL PSPPSVWFEA EFFHHILHWT PIPNQSESTC YEVALLRYGI ENSBTAP00000006870/1-574 --------EL PRPPSAWFEA EFFHHVLYWT PIPNQSESTY YEVELLRYGV bmy_03283T0/1-583 LGSRAH--EL PRPSSAWFEA EFFYHVLHWT PIPNQSESTY YEVELLRYGV 101 150 ENSTTRP00000008272/1-579 EPIYWNPIRS CSQTLVLSCD LTMQTLDLYH SNGYRARVRA VDGGQHSNWT ENSP00000227752/1-578 E--SWNSISN CSQTL--SYD LTAVTLDLYH SNGYRARVRA VDGSRHSNWT ENSBTAP00000006870/1-574 EPTSWKSIQR CSQMLMMSCD VTMETLDLYR SNGYRARVRA VDGSQHSNWT bmy_03283T0/1-583 EPIYWNPIRS CSQTLVLSCD LTMQTLDLYH SNGYRARVRA VDGGQLSNWT 151 200 ENSTTRP00000008272/1-579 SPNTRFSVDE XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000227752/1-578 VTNTRFSVDE VTLTVGSVNL EIHNGFILGK IQLPRPKMAP ANDTYESIFS ENSBTAP00000006870/1-574 SPNTRFSMDE VTLTVASVKL EVHNSNIVGA IQLPRPEVAP EGDTYENIFH bmy_03283T0/1-583 SPNTRFSVDE VTLTVAGVKL EMHDGIILGV IQLPRPKMAP AGDTYESIFH 201 250 ENSTTRP00000008272/1-579 XXXXXXXXXX XXXXXX---X SMTVKHNFNL PVXXXXXXXX XXXXXXXXXX ENSP00000227752/1-578 HFREYEIAIR KVPGNFTFTH KKVKHENFSL LTSGEVGEFC VQVKPSVASR ENSBTAP00000006870/1-574 NFREYQIEVR KAPGHYE-SH GKVKNESFKL PIPRGVGEFC VRVKPSVGSR bmy_03283T0/1-583 NFREYEIEVR KVPGRY---- -KFLADTHKL IVI------- ---------- 251 300 ENSTTRP00000008272/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000227752/1-578 SNKGMWSKEE CISLTRQYFT VTNVIIFFAF VLLLSGALAY CLALQLYVRR ENSBTAP00000006870/1-574 VNKEVWSKEE CILLTSQYFT VTNISIFLTF VLLLYGALAF CLTFQLYVRR bmy_03283T0/1-583 ---------S ASLTLKQNFT VTNLSIFFTF VLLLYGALAF FLALQLYVRH 301 350 ENSTTRP00000008272/1-579 XXXXXXXXVF KKPSPFSLIS QLSCPETQDT IHPLDEQAFP KVSPELRNSE ENSP00000227752/1-578 RKKLPSVLLF KKPSPFIFIS QRPSPETQDT IHPLDEEAFL KVSPELKNLD ENSBTAP00000006870/1-574 RGKLPAVLVF KKPSPFNLIS QFSHPETQDT VHTLDEEAFP KVTPELRNSD bmy_03283T0/1-583 RGKLPTVLVF KKPSPFSLIS QLSCPETQDT IHPLDEEAFP KVSPELRDSE 351 400 ENSTTRP00000008272/1-579 LHGSTDSGFS SAKPSLQTDE PQFHLPAPHP QAGGTLGKGA PRLPEDSC-S ENSP00000227752/1-578 LHGSTDSGFG STKPSLQTEE PQFLLPDPHP QADRTLGNRE PPVLGDSC-S ENSBTAP00000006870/1-574 MHGSTDSGFG SAKPSLQTEE PQFLLPASDP QAGGTLEKGM PQELENSCGS bmy_03283T0/1-583 LHGSTDSGFS SAKPSLQTDE PQFLLPAPHP QAGGTLGKGA TRLPENSC-S 401 450 ENSTTRP00000008272/1-579 SGGSKSTDSG ICLQEPSLSP GTEPSWEPQA GSDSRDQLDS GIGLVQNPEG ENSP00000227752/1-578 SGSSNSTDSG ICLQEPSLSP STGPTWEQQV GSNSRGQDDS GIDLVQNSEG ENSBTAP00000006870/1-574 AGSSNSADSG ICLPDPRLCP GTEPSWEPQV GSDSRDREDS GIGLVQNSRG bmy_03283T0/1-583 SGGSKSTDSG ICLQEPSLSP GTEPNWEPQV GSDSRDQDDS GIGLVQNSEG 451 500 ENSTTRP00000008272/1-579 QPEDVQGGSA LGPVSPLGPE VAAGEDPAAG AFQGYLKQTR CPEERAAEAG ENSP00000227752/1-578 RAGDTQGGSA LGHHSPPEPE VPGEEDPAAV AFQGYLRQTR CAEEKATKTG ENSBTAP00000006870/1-574 QPEDAQGGSA SGHVSPLGPE EPVEEDSVAG AFQGYLKQTQ CPEEKAAQAG bmy_03283T0/1-583 QPEGVQGGSA LDHVSPLGPE VAAGEDPAAG AFQGYLKQTR CPEERAAEAG 501 550 ENSTTRP00000008272/1-579 GLEEESSSTD GLGPKFKTCV DAEVDWPLPA LAKGYLKQDP PEMTLTPSGA ENSP00000227752/1-578 CLEEESPLTD GLGPKFGRCL VDEAGLHPPA LAKGYLKQDP LEMTLASSGA ENSBTAP00000006870/1-574 GLEEESSSTE DLDPQFRTCL DTEAGWPLPA LAKGYVQQDP PEMILAPLQT bmy_03283T0/1-583 GLEEESSSTD GLGPKFRTCV DAEADWPLPA LAKGYLKQDP PEMTLTPSGA 551 600 ENSTTRP00000008272/1-579 PAGQWNPPTE DWSLLGLTRC GDLGASDWSF AHDLAPLDCV AAPGGLLGSF ENSP00000227752/1-578 PTGQWNQPTE EWSLLALSSC SDLGISDWSF AHDLAPLGCV AAPGGLLGSF ENSBTAP00000006870/1-574 PEEQWDRPTE DWSFLGLTSC GDLGTSDWSF AHDLAPLDCV PAPGGLLGSF bmy_03283T0/1-583 PAGQWNPPTE DWSLLGLTSC GDLGTSDWSF AHDLAHLECV AAPGGLLGSF 601 650 ENSTTRP00000008272/1-579 DSDLVALPLI SSLHSSE ENSP00000227752/1-578 NSDLVTLPLI SSLQSSE ENSBTAP00000006870/1-574 DSDLVTLPLI TSLQSNE bmy_03283T0/1-583 DSDLVALPLI SSLHSSE