KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:42 2014 Check: 00 .. Name: ENSTTRP00000006356/1-575 Len: 615 Check: 4083 Weight: 1.00 Name: ENSP00000369268/1-575 Len: 615 Check: 4034 Weight: 1.00 Name: ENSBTAP00000006887/1-575 Len: 615 Check: 4516 Weight: 1.00 Name: bmy_13084T0/1-575 Len: 615 Check: 3199 Weight: 1.00 Name: BACU004500/1-614 Len: 615 Check: 6853 Weight: 1.00 // 1 50 ENSTTRP00000006356/1-575 MSQDSKVKTT ESSSSAPPKA RKLLPVLDPS GDYYYWWLNT MVFPVMYNLI ENSP00000369268/1-575 MSQDTKVKTT ESSPPAPSKA RKLLPVLDPS GDYYYWWLNT MVFPVMYNLI ENSBTAP00000006887/1-575 MSQDSKVKTT ESSPSVLTKA RKSLPVLDPS GDYYYWWLNT MVFPVMYNLI bmy_13084T0/1-575 MSQDSKVKTT ESSSSAPPKA RKWLPVLDPS GDYYYWWLNT MVFPVMYNLI BACU004500/1-614 MSQDSKVKTT ESSGSAPPEA RKWLPVLDPS GDYYYWWLNT MAFPVMYNLI 51 100 ENSTTRP00000006356/1-575 IVVCRACFPD LQRYYLVAWL VLDCTSDLLY LLDIVVRFHT GFLEQGILVV ENSP00000369268/1-575 ILVCRACFPD LQHGYLVAWL VLDYTSDLLY LLDMVVRFHT GFLEQGILVV ENSBTAP00000006887/1-575 IVVCRACFPD LQHGYLVAWL VLDYTSDLFY LLDIVVRFHT GFLEQGILVV bmy_13084T0/1-575 IIVCRACFPD LQHYYLVAWL VLDCTSDLLY LLDIVVRFHT GFLEQGILVV BACU004500/1-614 IIVCRACFPD LQHYYLAAWL VLDCTSDLLY LLDIVVRFHT GFLEQGILVV 101 150 ENSTTRP00000006356/1-575 D-GRISSRYV RTWSFFLDLA SLLPTEVAYV SLGPHTPTLR L--------- ENSP00000369268/1-575 DKGRISSRYV RTWSFFLDLA SLMPTDVVYV RLGPHTPTLR L--------- ENSBTAP00000006887/1-575 DKGRISSRYV RTWSFFLDLV SLLPTDVAYV SLGPHTPTLR L--------- bmy_13084T0/1-575 DKGRISSRYV RTWSFFLDLV SLLPTEVAYA SLGPHTPALR L--------- BACU004500/1-614 DKGRISSRYV RTWSFFLDLV SLLPTEVAYV SLGPHTPTLR LNRXXXXXXX 151 200 ENSTTRP00000006356/1-575 ---------- ---------- ---------- NRFLRVPRLS EAFDRMETCT ENSP00000369268/1-575 ---------- ---------- ---------- NRFLRAPRLF EAFDRTETRT ENSBTAP00000006887/1-575 ---------- ---------- ---------- NRFLRVPRLF EAFDRMETRT bmy_13084T0/1-575 ---------- ---------- ---------- NRFLRVPRLS EAFDRMETRT BACU004500/1-614 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX NRFLRVPRLF EAFDRMETRT 201 250 ENSTTRP00000006356/1-575 VHPNAFRIAK LMLYVFAVIH WNSCLYFALS RYLGFGSDAW VYPDPAQPGF ENSP00000369268/1-575 AYPNAFRIAK LMLYIFVVIH WNSCLYFALS RYLGFGRDAW VYPDPAQPGF ENSBTAP00000006887/1-575 AYPNAFRIAK LMLYIFVVIH WNSCLYFALS RYLGFGRDVW VYPDPAQPGF bmy_13084T0/1-575 VYPNAFRIAK LMLYVFVVIH WNSCLYFALS RYLGFGRDAW VYPDPAQPGF BACU004500/1-614 VYPNAFRIAK LMLYVFVVIH WNSCLYFALS RYLGFGRDAW VYPDPAQPGF 251 300 ENSTTRP00000006356/1-575 EQLWRQYLYS FHFSTLILTT VGDTPLPDRE EEYLFVVGDF LLAVMGFATI ENSP00000369268/1-575 ERLRRQYLYS FYFSTLILTT VGDTPPPARE EEYLFMVGDF LLAVMGFATI ENSBTAP00000006887/1-575 ERLRRQYLYS FYFSTLILTT VGDTPLPAQE EEYLFMVGDF LLAVMGFATI bmy_13084T0/1-575 EQLRRQYLYS FYFSTLILTT VGDTPLPDRE EEYLFMVADF LLAVMGFATI BACU004500/1-614 EQLRRQYLYS FYFSTLILTT VGDTPLPDRE EEYLFMVGDF LLAVMGFATI 301 350 ENSTTRP00000006356/1-575 MGSMSSVIYN MNTADAAFYP DHALVKKYMK LHHVNRRLQR RVMDWYQHLQ ENSP00000369268/1-575 MGSMSSVIYN MNTADAAFYP DHALVKKYMK LQHVNRKLER RVIDWYQHLQ ENSBTAP00000006887/1-575 MGSMSSVIYN MNTADAAFYP DHALVKKYMK LHHVNHRLER RVIDWYQHLQ bmy_13084T0/1-575 MGSMSSVIYN MNTADAAFYP DHALVKKYMK LHHVNRRLEX RVIDWYQHLQ BACU004500/1-614 MGSMSSVIYN MNTADAAFYP DHALVKKYMK RHPVNRRLER RVIDWYQHLQ 351 400 ENSTTRP00000006356/1-575 INKKMTNEVA ILQHLPERLR AEVAVSVHLP TLSRVRIFQN CEAGLLEELV ENSP00000369268/1-575 INKKMTNEVA ILQHLPERLR AEVAVSVHLS TLSRVQIFQN CEASLLEELV ENSBTAP00000006887/1-575 INKKMTNEVA ILQHLPERLR AEVAVSVHLP TLSRVQIFQN CEASLLEELV bmy_13084T0/1-575 INKKMTNEVA ILQHLPEQLR AEVAVSVHLP TLSRVQIFQN CEASLLEELV BACU004500/1-614 INKKMTNEVA ILQHLPEQLW AEVAVSVHLP TLSRVQIFQN CEASLLEELV 401 450 ENSTTRP00000006356/1-575 LKLQPQTYSP GKYVCRKGDT GQEMYIIREG QLAVVADDGV TQYAVLGAGL ENSP00000369268/1-575 LKLQPQTYSP GEYVCRKGDI GQEMYIIREG QLAVVADDGI TQYAVLGAGL ENSBTAP00000006887/1-575 LKLQPQTYSP GEYVCRKGDI GREMYIIREG QLAVVADDGV TQYAVLGAGL bmy_13084T0/1-575 LKLQPQTYSP GEYVCRKGDI GREMYIIREG QLAVVADDGV TQYAVLGAGL BACU004500/1-614 LKLQPQTYSP GEYVCRKGDI GREMYIIREG QLAVVADDGV TQYAVLGAGL 451 500 ENSTTRP00000006356/1-575 YFGEISIIDI KGNMSGNRPT ANIKSLGYSD LFCLSKEDLQ EVLSEYPQAQ ENSP00000369268/1-575 YFGEISIINI KGNMSGNRRT ANIKSLGYSD LFCLSKEDLR EVLSEYPQAQ ENSBTAP00000006887/1-575 YFGEISIINI KGNMSGNRRT ANIKSLGYSD LFCLSKEDLR EVLSEYPQAQ bmy_13084T0/1-575 YFGEISIINI KGNMSGNRRT ANIKSLGYSD LFCLSKEDLQ EVLSEYPQAQ BACU004500/1-614 YFGEISIINI KGNMFGNRRT ANIKSLGYSD LFCLSKEDLQ EVLSEYPQAQ 501 550 ENSTTRP00000006356/1-575 AVMEEKGREI LLTMNKLDVN AEAAETALQE ATEAQLRGLD QQLDDLQTGF ENSP00000369268/1-575 TIMEEKGREI LLKMNKLDVN AEAAEIALQE ATESRLRGLD QQLDDLQTKF ENSBTAP00000006887/1-575 AVMEEKGREI LLKMNKLDVN AEAAEIALQE ATEARLRGLD QQLDDLQTKF bmy_13084T0/1-575 AVMEEKGREI LLKMNKLDVN AEAAEVALQE ATEARLRGLD QQLDDLQTKF BACU004500/1-614 AVMEEKGREI LLKMNKLDVN AEAAEIALQE ATEARLRGLD QQLDDLQTKF 551 600 ENSTTRP00000006356/1-575 ARLLAELESR ALKIAYRIER QEWQTQEWPM PEELAEADHE GEPGEETSKD ENSP00000369268/1-575 ARLLAELESS ALKIAYRIER LEWQTREWPM PEDLAEADDE GEPEEGTSKD ENSBTAP00000006887/1-575 ARLLAELESG ALKIAYRIER LEWQTREWPM PEELMEADDE GEPGEGTSKD bmy_13084T0/1-575 ARLLAELESS ALKIAYRIER LEWQTREWPM PEELAEADDE GEPGEGTSKD BACU004500/1-614 ARLLAELESS ALKIAYRVER LEWQTREWPM PEELAEADDE GEPGEGTSKD 601 650 ENSTTRP00000006356/1-575 GEGRAGQEGP PSPEG ENSP00000369268/1-575 EEGRASQEGP PGPE- ENSBTAP00000006887/1-575 GEGRAGQEGP PGLE- bmy_13084T0/1-575 AEGRAGQEAP PSPE- BACU004500/1-614 AEGRAGQEEP PSPE-