KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:50 2014 Check: 00 .. Name: ENSTTRP00000009175/1-303 Len: 303 Check: 5710 Weight: 1.00 Name: ENSP00000398882/1-302 Len: 303 Check: 7199 Weight: 1.00 Name: ENSBTAP00000006935/1-303 Len: 303 Check: 1798 Weight: 1.00 Name: bmy_21305T0/1-180 Len: 303 Check: 5249 Weight: 1.00 Name: BACU006471/1-303 Len: 303 Check: 3694 Weight: 1.00 // 1 50 ENSTTRP00000009175/1-303 MVTEQELEGL GQMLVDPQKP LQARFRALFT LRGLGGPAAI SWISRAFSDD ENSP00000398882/1-302 MVTEQEVDAI GQTLVDPKQP LQARFRALFT LRGLGGPGAI AWISQAFDDD ENSBTAP00000006935/1-303 MVTEQEVEAV GQTLVDPGQP LQARFRALFT LRGLGGPVAI SWISRAFDDD bmy_21305T0/1-180 MVTEQEVEGV GQTLVDPQKP LQARFRALFT LRGLGGPAAI SWISRAFSDD BACU006471/1-303 MVTEQEVEGV GQTLVDPQKP LQARFRALFT LRGLGGPAAI SWISRAFSDD 51 100 ENSTTRP00000009175/1-303 SALLKHELAY CLGQMQDSRA IPVLVDVLRD TRQEPMVRHE AXXXXXXXXX ENSP00000398882/1-302 SALLKHELAY CLGQMQDARA IPMLVDVLQD TRQEPMVRHE AGEALGAIGD ENSBTAP00000006935/1-303 SALLKHELAY CLGQMQDRRA IPVLLDVLRD TRQEPMVRHE AGEALGAIGD bmy_21305T0/1-180 SALLKHELAY CLGQMQDSRA IPVLVDVLRD TRQEPMVRHE AGEALGAIGN BACU006471/1-303 SALLKHELAY CLGQMQDSRA IPVLVAVLRD TRQEPMVRHE AGEALGAIGN 101 150 ENSTTRP00000009175/1-303 XXXXXXXXXX XXXXXXXVAE TCQLAVRRLE WLQQHSGEPV AQGPYLSVDP ENSP00000398882/1-302 PEVLEILKQY SSDPVIEVAE TCQLAVRRLE WLQQHGGEPA A-GPYLSVDP ENSBTAP00000006935/1-303 PEVLEILKQY STDPVVEVAE TCQLAVRRLE WLQQHGGESA VRGPYLSVDP bmy_21305T0/1-180 PEVLEILKQY STDPVIE--- ---------- ----HSGEPV AQGPYLSVDP BACU006471/1-303 PEVLEILKQY STDPVIEVAE TCQLAVRRLE WLQQHSGEPV AQGPYRSGDP 151 200 ENSTTRP00000009175/1-303 APSAEERDVG RLRVALLDEA RPLFDRYRAM FALRDAGGEE AALALAEGLQ ENSP00000398882/1-302 APPAEERDVG RLREALLDES RPLFERYRAM FALRNAGGEE AALALAEGLH ENSBTAP00000006935/1-303 APPAEERDLG QLREALLDEA RPLFDRYRAM FALRDAGGKE AALALAEGLR bmy_21305T0/1-180 APSAEERDVG RLRGALLDEA RPLFDRYRAM FALRDAGGEE AALALAE--- BACU006471/1-303 PPSAEERDVG RLRGALLDEA RPLFDRYRAM FALRDAGGEE AALALAEGLR 201 250 ENSTTRP00000009175/1-303 CGSALFRHEI GYVLGQLQHE AAVPQLAAAL ARPAENPMVR HECAEALGAI ENSP00000398882/1-302 CGSALFRHEV GYVLGQLQHE AAVPQLAAAL ARCTENPMVR HECAEALGAI ENSBTAP00000006935/1-303 CGSALFRHEI GYVLGQMQHE AAVPQLAAAL AQPTENPMVR HECAEALGAI bmy_21305T0/1-180 ---------- ---------- ---------- ---------- ---------- BACU006471/1-303 CGSALFRHEI GYVLGQLQHE AAVPQLVEAL ARPTENPMVR HECAEALGAI 251 300 ENSTTRP00000009175/1-303 ARPACLDALR AHAADPERVV RESCEVALDM YEYETGSAFQ YADGLEHLHP ENSP00000398882/1-302 ARPACLAALQ AHADDPERVV RESCEVALDM YEHETGRAFQ YADGLEQLRG ENSBTAP00000006935/1-303 ARPACLAALR AHVADPERVV RESCEVALDM YEYETGSTFQ YADGLERLRS bmy_21305T0/1-180 ---------- ---------- ---------- ---------- ---------- BACU006471/1-303 ARPACLAALR AHAADPERVV RESCEVALDM YEYETGSAFQ YADGLEHLHP 301 350 ENSTTRP00000009175/1-303 PPS ENSP00000398882/1-302 APS ENSBTAP00000006935/1-303 PLS bmy_21305T0/1-180 --- BACU006471/1-303 PPS