KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:52 2014 Check: 00 .. Name: ENSTTRP00000002398/1-885 Len: 1703 Check: 116 Weight: 1.00 Name: BACU004943/1-1662 Len: 1703 Check: 6848 Weight: 1.00 Name: ENSP00000326534/1-875 Len: 1703 Check: 1371 Weight: 1.00 Name: bmy_15851T0/1-864 Len: 1703 Check: 8285 Weight: 1.00 Name: ENSBTAP00000006949/1-875 Len: 1703 Check: 2414 Weight: 1.00 // 1 50 ENSTTRP00000002398/1-885 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVVSAE BACU004943/1-1662 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVG--- ENSP00000326534/1-875 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVG--- bmy_15851T0/1-864 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVG--- ENSBTAP00000006949/1-875 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVG--- 51 100 ENSTTRP00000002398/1-885 VASPESGSCN RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH BACU004943/1-1662 --------CN RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH ENSP00000326534/1-875 --------CN RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH bmy_15851T0/1-864 --------CN RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH ENSBTAP00000006949/1-875 --------CN RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH 101 150 ENSTTRP00000002398/1-885 DLLTFQQITT VSKAKGASLF TCDLQHTETG EEVLRMCVAV KKKLQLYFWK BACU004943/1-1662 DLLTFQQITT VSKAKGASLF TCDLQHTETG EEVLRMCVAV KKKLQLYFWK ENSP00000326534/1-875 DLLTFQQITT VSKAKGASLF TCDLQHTETG EEVLRMCVAV KKKLQLYFWK bmy_15851T0/1-864 DLLTFQQITT VSKAKGASLF TCDLQHTETG EEVLRMCVAV KKKLQLYFWK ENSBTAP00000006949/1-875 DLLTFQQITT VSKAKGASLF TCDLQHAETG DEVLRMCVAV KKKLQLYFWK 151 200 ENSTTRP00000002398/1-885 DREFHELQGD FSVPDVPKSM AWCENAICVG FKRDYYLIRV DGKGSNKELF BACU004943/1-1662 DREFHELQGD FSVPDVPKSM AWCENAICVG FKRDYYLIRV DGKGSNKELF ENSP00000326534/1-875 DREFHELQGD FSVPDVPKSM AWCENSICVG FKRDYYLIRV DGKGSIKELF bmy_15851T0/1-864 DREFHELQGD FSVPDVPKSM AWCENAICVG FKRDYYLIRV DGKGSNKELF ENSBTAP00000006949/1-875 DREFHELQGD FSVPDVPKSM AWCENSICVG FKRDYYLIRV DGKGANKELF 201 250 ENSTTRP00000002398/1-885 PTGKQLEPLV APLADGKVAV GQDDLTVVLN EDGICTQKCA LNWTDIPVAM BACU004943/1-1662 PTGKQLEPLV APLADGKVAV GQDDLTVVLN EEGICTQKCA LNWTDIPVAM ENSP00000326534/1-875 PTGKQLEPLV APLADGKVAV GQDDLTVVLN EEGICTQKCA LNWTDIPVAM bmy_15851T0/1-864 PTGKQLEPLV APLADGKVAV GQDDLTVVLN EEGICTQKCA LNWTDIPVAM ENSBTAP00000006949/1-875 PTGKQLEPLV APLADGKVAV GQDDLTVVLN EEGICTQKCA LNWTDIPVAM 251 300 ENSTTRP00000002398/1-885 EHQPPYIIAV LPRYVEIRTF EPRLLVQSIE LQRPRFITSG GSNIIYVASN BACU004943/1-1662 EHQPPYIIAV LPRYVEIRTF EPRLLVQSIE LQRPRFITSG GSNIIYVASN ENSP00000326534/1-875 EHQPPYIIAV LPRYVEIRTF EPRLLVQSIE LQRPRFITSG GSNIIYVASN bmy_15851T0/1-864 EHQPPYIIAV LPRYVEIRTF EPRLLVQSIE LQRPRFITSG GSNIIYVASN ENSBTAP00000006949/1-875 EHQPPYIIAV LPRYVEIRTF EPRLLVQSIE LQRPRFITSG GSNIIYVASN 301 350 ENSTTRP00000002398/1-885 HFVWRLIPVP MATQIQQLLQ DKQFELALQL AEMKDDSDSE KQQQIHHIKN BACU004943/1-1662 HFVWRLIPVP MATQIQQLLQ DKQFELALQL AEMKDDSDSE KQQQIHHIKN ENSP00000326534/1-875 HFVWRLIPVP MATQIQQLLQ DKQFELALQL AEMKDDSDSE KQQQIHHIKN bmy_15851T0/1-864 HFVWRLIPVP MATQIQQLLQ DKQFELALQL A--------- --QQIHHIKN ENSBTAP00000006949/1-875 HFVWRLIPVP MATQIQQLLQ DKQFELALQL AEMKDDSDSE KQQQIHHIKN 351 400 ENSTTRP00000002398/1-885 LYAFNLFCQK RFDESMQVFA KLGTXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004943/1-1662 LYAFNLFCQK RFDESMQVFA KLGTDPTHVM GLYPDLLPTD YRKQLQYPNP ENSP00000326534/1-875 LYAFNLFCQK RFDESMQVFA KLGTDPTHVM GLYPDLLPTD YRKQLQYPNP bmy_15851T0/1-864 LYAFNLFCQK RFDESMQVFA KLGTDPTHVM GLYPDLLPTD YRKQLQYPNP ENSBTAP00000006949/1-875 LYAFNLFCQK RFDESMQVFA KLGTDPTHVM GLYPDLLPTD YRKQLQYPNP 401 450 ENSTTRP00000002398/1-885 XXXXXXXXXX XXXXXXXXXX XXKRSQLVKK LNDSDHQSST SPLMEGTPTI BACU004943/1-1662 LPMLSGAELE KAHLALIDYL TQKRSQLVKK LNDSDHQSST SPLMEGTPTI ENSP00000326534/1-875 LPVLSGAELE KAHLALIDYL TQKRSQLVKK LNDSDHQSST SPLMEGTPTI bmy_15851T0/1-864 LPVLSGAELE KAHLALIDYL TQKRSQLVKK LNDSDHQSST SPLMEGTPTI ENSBTAP00000006949/1-875 LPVLSGAELE KAHLALIDYL TQKRSQLVKK LNDSDHQSST SPLMEGTPTI 451 500 ENSTTRP00000002398/1-885 KSKKKLLQII DTTLLKCYLH TNVALVAPLL RLENNHCHIE ESEHVLKKAH BACU004943/1-1662 KSKKKLLQII DTTLLKCYLH TNVALVAPLL RLENNHCHIE ESEHVLKKAH ENSP00000326534/1-875 KSKKKLLQII DTTLLKCYLH TNVALVAPLL RLENNHCHIE ESEHVLKKAH bmy_15851T0/1-864 KSKKKLLQII DTTLLKCYLH TNVALVAPLL RLENNHCHIE ESEHVLKKAH ENSBTAP00000006949/1-875 KSKKKLLQII DTTLLKCYLH TNVALVAPLL RLENNHCHIE ESEHVLKKAH 501 550 ENSTTRP00000002398/1-885 KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV QYLQHLGTEN BACU004943/1-1662 KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV QYLQHLGTEN ENSP00000326534/1-875 KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV QYLQHLGTEN bmy_15851T0/1-864 KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV QYLQHLGTEN ENSBTAP00000006949/1-875 KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV QYLQHLGTEN 551 600 ENSTTRP00000002398/1-885 LHLIFSYSVW VLRDFPEDGL KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004943/1-1662 LHLIFSYSMW VLRDFPEDGL KIFTEDLPEV ESLPRDRVLG FLVENFKGLA ENSP00000326534/1-875 LHLIFSYSVW VLRDFPEDGL KIFTEDLPEV ESLPRDRVLG FLIENFKGLA bmy_15851T0/1-864 LHLIFSYSVW VLRDFPEDGL KIFTEDLPEV ESLPRDRVLG FLVENFKGLA ENSBTAP00000006949/1-875 LHLIFSYSVW VLRDFPEDGL KIFTEDLPEV ESLPRDRVLG FLVENFKGLA 601 650 ENSTTRP00000002398/1-885 XXXXEHVIHV WEETGSRFHN CLIQLYCEKV QGLMKEYLLS --FPAGKAPV BACU004943/1-1662 IPYL------ ---------- ---------- ----HPFMLS VVFLKGKAPV ENSP00000326534/1-875 IPYLEHIIHV WEETGSRFHN CLIQLYCEKV QGLMKEYLLS --FPAGKTPV bmy_15851T0/1-864 IPYLEHVIHV WEETGSRFHN CLIQLYCEKV QGLMKEYLLS --FPAGKAPV ENSBTAP00000006949/1-875 IPYLEHVIHV WEETGSRFHN CLIQLYCEKV QGLMKEYLLS --FPAGKAPV 651 700 ENSTTRP00000002398/1-885 PAGEEEGELG EYRRKLLKFL EISSYYDPGR LICDFPFDGL LEERALLLGR BACU004943/1-1662 PAGEEEGELG EYRRKLLKFL EISSYYDPGR LICDFPFDGL LEERALLLGR ENSP00000326534/1-875 PAGEEEGELG EYRQKLLMFL EISSYYDPGR LICDFPFDGL LEERALLLGR bmy_15851T0/1-864 PAGEEEGELG EYRRKLLKFL EISSYYDPGR LICDFPFDGL LEERALLLGR ENSBTAP00000006949/1-875 PAGEEEGELG EYRRKLLMFL EISSYYDPGR LICDFPFDGL LEERALLLGR 701 750 ENSTTRP00000002398/1-885 MGKHEQALFI YVHILKDTRM AEEYCHKHYD QNKDGNKDVY LSLLRMYLSP BACU004943/1-1662 MGKHEQALFI YVHILKDTRM AEEYCHKHYD QNKDGNKDVY LSLLRMYLSP ENSP00000326534/1-875 MGKHEQALFI YVHILKDTRM AEEYCHKHYD RNKDGNKDVY LSLLRMYLSP bmy_15851T0/1-864 MGKHEQALFI YVHILKDTRM AEEYCHKHYD QNKDGNKDVY LSLLRMYLSP ENSBTAP00000006949/1-875 MGKHEQALFI YVHVLKDTRM AEEYCHKHYD QNKDGNKDVY LSLLRMYLSP 751 800 ENSTTRP00000002398/1-885 PSVHCLGPIK LELLEPQANL QAALQVLELH HGKLDTTKAI NLLPANTQIN BACU004943/1-1662 PSVHCLGPIK LELLEPQANL QAALQVLELH HGKLDTTKAI NLLPANTQIN ENSP00000326534/1-875 PSIHCLGPIK LELLEPKANL QAALQVLELH HSKLDTTKAL NLLPANTQIN bmy_15851T0/1-864 PSVHCLGPIK LELLEPQANL QAALQVLELH HGKLDTTKAI NLLPANTQIN ENSBTAP00000006949/1-875 PSVHCLGPIK LELLEPQANL QAALQVLELH HSKLDTTKAI NLLPANTQIN 801 850 ENSTTRP00000002398/1-885 DIRIFLEKVL EENAQRKRFN QVLKNLLHAE FL-VQEERIL HQQVKCIITE BACU004943/1-1662 DIRIFLEKVL EENAQKKRFN QVLKNLLHAE FLRVHEERIL HQQVKCIITE ENSP00000326534/1-875 DIRIFLEKVL EENAQKKRFN QVLKNLLHAE FLRVQEERIL HQQVKCIITE bmy_15851T0/1-864 DIRIFLEKVL EENAQKKRFN QVLKNLLHAE FLRVQEERIL HQQVKCIITE ENSBTAP00000006949/1-875 DIRIFLEKVL EENAQKKRFN QVLKNLLHAE FLRVQEERIL HQQVKCIITE 851 900 ENSTTRP00000002398/1-885 EKVCMVCKKK IGNSA----F ARYPN----- ---------- ---------- BACU004943/1-1662 EKVCMVCKKK IGNRTSQEPS ARLPEALEYQ SSSGCKGQMA RPLVSKADCY ENSP00000326534/1-875 EKVCMVCKKK IGNSA----F ARYPN----- ---------- ---------- bmy_15851T0/1-864 EKVCMVCKKK IGNSA----F ARYPN----- ---------- ---------- ENSBTAP00000006949/1-875 EKVCMVCKKK IGNSA----F ARYPN----- ---------- ---------- 901 950 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 VQLCLHTASS SPAQTRVVAN CRDPEWNETF HYRLHGAVKN VLELTLYDKD ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 VLDNDQLSQL LFDLRSLKPH QPHRHTFSLS HQDSQELQVE FVLEDSQVPA ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 SEVITNGVLV AQPCLRIQGT LSGDGTAPHQ EYGSRQIWLA VPGAHEKPQL ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 LPLQPPLQAD LPATFTFHAN PVLSSRLEVE LREKLTVLQN GPSAELEVQI ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 SKLGEGDVLL SSLALGQEQQ HVVALGESNR GCKCESHSVR SGMGCCLFQG ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 QEVAMSVKAE VSSGDLDLRL GFDLCDGEQE FLDKRKHVVS KALQQVLGLS ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 QAPDGNQVPV VAVLASGGGT RAMSSLYGSL AGLQELGVLD TVTYLSGVSG ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 STWCISTLYK DPAWSQVALQ GPIERAQARV CSSKMGAMSM ERLQYYAQEL ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000002398/1-885 ---------- ------GVVV HYFCSKEVNP ADT------- ---------- BACU004943/1-1662 GIRESSGHSA SLIDLWGLLV EYFLYQEENP AKLSDQQEAV SQGQNPYPIY ENSP00000326534/1-875 ---------- ------GVVV HYFCSKEVNP ADT------- ---------- bmy_15851T0/1-864 ---------- ------GVVV HYFCSKEVNP ADT------- ---------- ENSBTAP00000006949/1-875 ---------- ------GVVV HYFCSKEVNP ADT------- ---------- 1351 1400 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 ASVNVRGNIS GEDFAEWCEF TPHEVGLPKY GAYVPTELFS SEFFMGRLLQ ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 LRPEPRICYL QGIWGSAFAA SLDEVFLKTT GSGLGFLQRC RSSVNITDGC ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 QKLQLHDPER LQTRLFTLQG PFSQAVLGIF TYRFTSAQNS NFTKGLCLHK ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 DYVSDREFLA WKDSHPDAFP NQLTPMRDCL YLVDGGFAIN SPFPLSLQPQ ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 RAVDLILSFD YSLDAPFEVL QMTGKYCLDR GISFPSTEVP PEDLKDPREC ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 YLFAKAEDLR SPVVLHFPLV NRTFRTHLAP GVERQTDEEK ACGDFVISGP ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSTTRP00000002398/1-885 ---------- ---------- ---------- ---------- ---------- BACU004943/1-1662 DTPYGMMNFT YEPQEFERLV ALSRYNVLNN VETVRQALRL ALDRRQARDR ENSP00000326534/1-875 ---------- ---------- ---------- ---------- ---------- bmy_15851T0/1-864 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006949/1-875 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSTTRP00000002398/1-885 --- BACU004943/1-1662 AGG ENSP00000326534/1-875 --- bmy_15851T0/1-864 --- ENSBTAP00000006949/1-875 ---