KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:30:53 2014 Check: 00 .. Name: ENSBTAP00000006950/1-564 Len: 703 Check: 7936 Weight: 1.00 Name: ENSTTRP00000005238/1-603 Len: 703 Check: 7949 Weight: 1.00 Name: bmy_03841T0/1-682 Len: 703 Check: 7581 Weight: 1.00 Name: BACU010262/1-565 Len: 703 Check: 8266 Weight: 1.00 // 1 50 ENSBTAP00000006950/1-564 ---------- ---------- ---------- --------MS QTSLKQKKKN ENSTTRP00000005238/1-603 ---------- ---------- ---------- --------MS QTSLKQK-KN bmy_03841T0/1-682 MAHVSYLKSE PLSNRKNRKW SWGEENLHNN KRISIVKEMS QTSLKQKKKN BACU010262/1-565 ---------- ---------- ---------- ---MPRDEKL INILCFHIKN 51 100 ENSBTAP00000006950/1-564 ETGSRYSKDS LEGDKSRKDS EKS-VRLTTQ ---------- ---------- ENSTTRP00000005238/1-603 ETGPRYSKDS -EVDKSRKDS EKSGVRLSTQ ---------- --------MR bmy_03841T0/1-682 ETGPRYSKDS LEADKSRKDS EKSGVRLSTQ GGKGSPAIAL TTFCTIFQMR BACU010262/1-565 ETGPRYSKDS LEADKSRKDS EKSGVRLSTQ ---------- ---------- 101 150 ENSBTAP00000006950/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005238/1-603 HAVIPHHSLR CCPMRGHSSC RRCLCAAEGK VLLGPCCTIR VYIHMCLLWE bmy_03841T0/1-682 RAVIPHHSLR CCPMRGHSSC RRCLCAAEGK VLLGPCRTIR IYIHMCLLWE BACU010262/1-565 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000006950/1-564 ---------G SQELTLPKSD SRGYVVRNQW SRTSRSPSTR PPSAEESRSK ENSTTRP00000005238/1-603 QG-QITVIRG SRELTLLKTD S-GYLVRNQW SRTSRSPSTR APSGGESRSK bmy_03841T0/1-682 QGWQITVIRG SQELTSPKTD SRGYLVRNQW SRTSRSPSTR APSVDESRSK BACU010262/1-565 ---------G SQELTLPKTD SRGYLVRNQW SRTSRSPSTR APSVDESRSK 201 250 ENSBTAP00000006950/1-564 NTSLK----- ---------- --LPSSSTTS RTSSTSPSHQ ESPKQLSAQP ENSTTRP00000005238/1-603 NTSLK----- ---------- --SPSSSKTS RTSFTSPSHQ ESPKPLSAQR bmy_03841T0/1-682 NTRMRTGTLG GHLTQKPTFL LQPPSSSTTS RTSSTSPSHQ ESPKPLSAQP BACU010262/1-565 NTSLK----- ---------- --PPSSSTTS RTSSTSPSHQ ESPKPLSAQP 251 300 ENSBTAP00000006950/1-564 SPTTQNMPLD SRNSMSPEAQ LQTTSRRTTK -SENPDTWSH STGREMREGR ENSTTRP00000005238/1-603 SPPTPTMPLD SRSSTTPEPA -PDGSRRSTK MAENSDAWSP GLGREILAGQ bmy_03841T0/1-682 SPPTPTIAFD SRSSRTPEVQ LQTGSLRSTK MAENSDAWSP GLGREIRESR BACU010262/1-565 SPPTPTIALD SRSSTTPEVQ LQTGSRRSTK MAENSDAWSP GLGREIRESR 301 350 ENSBTAP00000006950/1-564 EKRESRDTRD MSRSRDSHDS RDTHQREYSR TPPSEWKSYT QRRMLYPSQM ENSTTRP00000005238/1-603 ---------- ---------S RDTHQREYPR TPPTERKSYA QRRALYPSRL bmy_03841T0/1-682 YPRESRDSR- --------ES RDTHQREYPR TPPTEWKSYA QRRALYPSQL BACU010262/1-565 DSRESRDSR- --------DS RDTHQREYPR TPPTEWKSYA QRRALYPSQL 351 400 ENSBTAP00000006950/1-564 DHDCVSELAR KREEEEDEDE AYWASVRTLY EKTPNCSRPR PPKPKHAITV ENSTTRP00000005238/1-603 DQDCMPD--Q QREEEADEDD AYWASVRTLY EKSPSCSRPR PPKPKHAITI bmy_03841T0/1-682 DQDWMPDLVR QREEEEDEDD AYWASVRTLY EKTPSCSRPR PPKPKHAITI BACU010262/1-565 DQDCMSDLVR QREEEEDEDD AYWASVRTLY EKTPSSSRPR PPKPKHAITI 401 450 ENSBTAP00000006950/1-564 AVSSGALFNM MDSRKIYDEE GLEKYMEYQL TNENVVLTPG PAFRFVKALQ ENSTTRP00000005238/1-603 AVSSRALFNM VDGRKIYKEE GLEKYMEYQL FNENVVLAPG PAFHFVKALQ bmy_03841T0/1-682 AVSSRALFNM VDGRKIYKEE GLEKYMEYQL SNENVVLAPG PAFRFVKALQ BACU010262/1-565 AVSSRALFNM VDGRKIYKEE GLEKYMEYQL SNENVVLAPG PAFRFVKALQ 451 500 ENSBTAP00000006950/1-564 HVNCRLRELY PDEQDLFDIV LMTNNHAQVG VRLINSVNHY GLLIDRFCLT ENSTTRP00000005238/1-603 HVNARLRELY PDEQDLFDIV LMTNNHAQVG VRLINSVNHY GLLIDRFCLT bmy_03841T0/1-682 HVNARLRELY PDEQDLFDIV LMTNNHAQVG VRLINSVNHY GLLIDRFCLT BACU010262/1-565 HVNARLRELY PDEQDLFDIV LMTNNHAQVG VRLINSVNHY GLLIDRFCLT 501 550 ENSBTAP00000006950/1-564 GGKSPIGYLK AYLTNLYVSA DSDKVLEAIQ EGIASATMYE GAKDMSYCDT ENSTTRP00000005238/1-603 GGKSPIGYLK AYLTNLYLSA DSEKVQEAIQ EGIASATMFD GAKDMAYCDT bmy_03841T0/1-682 GGKSPIGYLK AYLTNLYLSA DSEKVQEAIQ E--------- ---DMAYCDT BACU010262/1-565 GGKSPIGYLK AYLTNLYLSA DSEKVQEAIQ EGIASATMFD GAKDMAYCDT 551 600 ENSBTAP00000006950/1-564 QLRVVFDGDA VLFCEEPEHS TKDHGLDKCF QHEALADNKP LGQGPLKGFM ENSTTRP00000005238/1-603 QLRVAFDGDA VLFSDESDHI TKEHGLDKFF QHEALFENKP LAQGPLKGFL bmy_03841T0/1-682 QLRVAFDGDA VLFSDESDHI TKEHGLDKFF QHEALFENKP LAQGPLKGFL BACU010262/1-565 QLRVAFDGDA VLFSDESDHI TKEHGLDKFF QHEALFENKP LAQGPLKGFL 601 650 ENSBTAP00000006950/1-564 EDLGRLQKKF YAKDERLCCP IRTYLVTARS AASSGARVLK TLRRWGLEID ENSTTRP00000005238/1-603 DDLGRLQKKF YAKDERLCCP IRTYLVTARS AASSGARVLK TLRR-GLEID bmy_03841T0/1-682 EDLGRLQKKF YAKDERLCCP IRTYLVTARS AASSGARVLK TLRRWGLEID BACU010262/1-565 EDLGRLQKKF YAKDERLCCP IRTYLVTARS AASSGARVLK TLRRWGLEID 651 700 ENSBTAP00000006950/1-564 EALFLAGAPK GPILAKIRPH LFFDDHMFHI EGAQKYGTTT AHVPYGISQK ENSTTRP00000005238/1-603 EALFLAGAPK GPISVKIRPH IFFDDHMFHI EGAQKFGTIT AHVPYGINQK bmy_03841T0/1-682 EALFLAGAPK GPILVKIRPH IFFDDHMFHI EGAQKFGTIT AHVPYGINQK BACU010262/1-565 EALFLAGAPK GPILVKIRPH IFFDDHMFHI EGAQKFGTIT AHVPYGINQK 701 750 ENSBTAP00000006950/1-564 --- ENSTTRP00000005238/1-603 ENN bmy_03841T0/1-682 ENN BACU010262/1-565 ENN