KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:54 2014 Check: 00 .. Name: ENSP00000301645/1-504 Len: 504 Check: 7470 Weight: 1.00 Name: ENSBTAP00000006957/1-500 Len: 504 Check: 9223 Weight: 1.00 Name: ENSTTRP00000004675/1-501 Len: 504 Check: 1601 Weight: 1.00 Name: bmy_11859T0/1-501 Len: 504 Check: 9735 Weight: 1.00 Name: BACU002313/1-475 Len: 504 Check: 7453 Weight: 1.00 // 1 50 ENSP00000301645/1-504 MMTTSLIWGI AIAACCCLWL ILGIRRRQTG EPPLENGLIP YLGCALQFGA ENSBTAP00000006957/1-500 MMSLSLIWGI VIAVCCCLYL -LGMRRRQMG EPPLENGLIP YLGCALQFGA ENSTTRP00000004675/1-501 MMSVSLIWGV VIAVCCCWWL LLGTRRRQMG EPPLENGLIP YLGCALQFGA bmy_11859T0/1-501 MMSISLIWGT VIAACCCLWL LLGMRRRQMG EPPLENGLIP YLGCALQFGA BACU002313/1-475 ---------- ---------- ------RQMG EPPLENGLIP YLGCALQFGA 51 100 ENSP00000301645/1-504 NPLEFLRANQ RKHGHVFTCK LMGKYVHFIT NPLSYHKVLC HGKYFDWKKF ENSBTAP00000006957/1-500 NPLEFLRANQ RKHGHVFTCR LMGNYVHFIT NPLSYHKVLC HGKYFDWKKF ENSTTRP00000004675/1-501 NPLEFLRANQ RKHGHVFTCK LMGNYVHFIT NPLLYHKVLY HGKYFDWKKF bmy_11859T0/1-501 NPLEFLRANQ RKHGHVFTCK LMGNYVHFIT NPLSYHKVLY HGKYFDWKKF BACU002313/1-475 NPLEFLRANQ RKHGHVFTCK LMGNYVHFIT NPLSYHKVLY HGKYFDWKKF 101 150 ENSP00000301645/1-504 HFATSAKAFG HRSIDPMDGN TTENINDTFI KTLQGHALNS LTESMMENLQ ENSBTAP00000006957/1-500 HFTASAKAFG HRSIDPSDGN TTDTISKTII KTLQGDALSS LTEAMMGNLQ ENSTTRP00000004675/1-501 HFTASAKAFG HRRIDPSDGN TTDNISKTII KTLQGDALNS LSEAMMENLQ bmy_11859T0/1-501 HFTASAKAFG HRSIDPSDGN TTDNISKTII KTLQGDALNS LTEAMMENLQ BACU002313/1-475 HFTASAKAFG HRSIDPSDGN TTDNISKTII KTLQGDALNS LTEAMMENLQ 151 200 ENSP00000301645/1-504 RIMRPPVSSN SKTAAWVTEG MYSFCYRVMF EAGYLTIFGR DLTRRDTQKA ENSBTAP00000006957/1-500 LVLRPQGPPQ PPTPTWVTEG MYSFCYRVMF EAGYLTLFGR DLAGQDAQKA ENSTTRP00000004675/1-501 LVLRPQVVPK PKTPTWMSEG MYAFCYRVMF EAGYFTLFGK DLSGQDAQKA bmy_11859T0/1-501 LVLRPQVVPK PKTPAWMSEG MYAFCYRVMF EAGYFTLFGK DLTGQDAQKA BACU002313/1-475 LVLRSQVVPK PKTPAWMSEG MYAFCYRVMF EAGYFTLFGK DLTGQDAQKA 201 250 ENSP00000301645/1-504 HILNNLDNFK QFDKVFPALV AGLPIHMFRT AHNAREKLAE SLRHENLQKR ENSBTAP00000006957/1-500 LILNSLDNFK QFDKIFPALV AGFPIHVFKT GHYAREKLTE GLRLQKFRER ENSTTRP00000004675/1-501 LILNHLDHFK QFDKIFPALV AGFPIHVFKT GHYAREKLAE GLRLQKLRKR bmy_11859T0/1-501 LILNHLDHFK QFDKIFPALV AGFPIHVFKT GHYAREKLAE GLRLQKLRKR BACU002313/1-475 LILNHLDHFK QFDKIFPALV AGFPIHVFKT GHYAREKLAE GLRLQKLRKR 251 300 ENSP00000301645/1-504 ESISELISLR MFLNDTLSTF DDLEKAKTHL VVLWASQANT IPATFWSLFQ ENSBTAP00000006957/1-500 DHISELVR-- -FLNDTFATL DDTERAKSLL AVLWASQANT IPATFWSLFQ ENSTTRP00000004675/1-501 DHISELVR-- -FLNDTLSTL DDTEKAKSFL AVLWASQANT IPATFWSLFQ bmy_11859T0/1-501 DHISELVT-- -FLNDTLSTL DDTEKAKSLL AVLWASQANT IPATFWSLFQ BACU002313/1-475 DHISELVR-- -FLNDTLSTL DDTEKAKSLL AVLWASQANT IPATFWSFFQ 301 350 ENSP00000301645/1-504 MIRNPEAMKA ATEEVKRTLE NAGQKVSLEG NPICLSQAEL NDLPVLDSII ENSBTAP00000006957/1-500 MIRNPEAMKA ATEEVNKTLE NAGQKVSFED SPIHLNQTQL DNMPVLDSII ENSTTRP00000004675/1-501 MIRNPEAMKA ATEEVNKMLE NAGQKISFED NPIYLNRIQL DDMPVLDSII bmy_11859T0/1-501 MIRNPEAMKA ATEEVNKMLE NAGQKISFED NPIYLNRIQL DDMPVLDSII BACU002313/1-475 MIRNPDAMKA ATEEVNKMLE NAGQKISFED NPIYLNRIQL DDMPVLDSII 351 400 ENSP00000301645/1-504 KESLRLSSAS LNIRTAKEDF TLHLEDGSYN IRKDDIIALY PQLMHLDPEI ENSBTAP00000006957/1-500 KESLRLSSAS LNIRTAKEDF TLHLQDGSYN IRKDDIIALY PQLMHLDPEI ENSTTRP00000004675/1-501 KESLRLSSAS LNIRTAKEDF TLHLQDSSYN IRKDDIIALY PQLMHLDPEI bmy_11859T0/1-501 KESLRLSSAS LNIRTAKEDF TLHLQDGSYN IRKDDIIALY PQLMHLDPEI BACU002313/1-475 KESLRLSSAS LNIRTAKEDF TLHLQDGSYN IRKDDIIALY PQLMHLDPEI 401 450 ENSP00000301645/1-504 YPDPLTFKYD RYLDENGKTK TTFYCNGLKL KYYYMPFGSG ATICPGRLFA ENSBTAP00000006957/1-500 YPDPLTFKYD RYLDENGKTK TTFYSNGLKL KYYYMPFGSG VTICPGRLFA ENSTTRP00000004675/1-501 YPDPLTFKYD RYLDENGKTR STFYSNGLKL KYYYMPFGSG ATICPGRLFA bmy_11859T0/1-501 YPDPLTFKYD RYLDENGKTK TTFYSNGLKL KYYYMPFGSG ATICPGRLFA BACU002313/1-475 YPDPLTFKYD RYLDENGKTK TAFYSNGLKL KYYYMPFGSG ATICPGRLFA 451 500 ENSP00000301645/1-504 IHEIKQFLIL MLSYFELELI EGQAKCPPLD QSRAGLGILP PLNDIEFKYK ENSBTAP00000006957/1-500 VQEIKQFLIL MLSYFELELV ESCVKCPPLD QSRAGLGILP PLYDTEFRYK ENSTTRP00000004675/1-501 VQEIKQFLIL MLSYFELEFV ESCVQCPPLD QSRAGLGVLP PLNDIEFRYK bmy_11859T0/1-501 VQEIKQFLIL MLSYFELELV ESCVQCPPLD QSRAGLGILP PLNDIEFRYK BACU002313/1-475 VQEIKQFLIL MLSYFELELV ESCVQCPPLD QSRAGLGILP PLNDIEFRYK 501 550 ENSP00000301645/1-504 FKHL ENSBTAP00000006957/1-500 FKHS ENSTTRP00000004675/1-501 FKHL bmy_11859T0/1-501 FKHL BACU002313/1-475 FKHV