KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:54 2014 Check: 00 .. Name: ENSTTRP00000005128/1-399 Len: 515 Check: 3080 Weight: 1.00 Name: ENSP00000274721/1-400 Len: 515 Check: 6171 Weight: 1.00 Name: ENSBTAP00000006958/1-394 Len: 515 Check: 1252 Weight: 1.00 Name: bmy_12150T0/1-504 Len: 515 Check: 8516 Weight: 1.00 Name: BACU004103/1-314 Len: 515 Check: 6316 Weight: 1.00 // 1 50 ENSTTRP00000005128/1-399 ---------- ---------- ---------- ---------- ---------- ENSP00000274721/1-400 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006958/1-394 ---------- ---------- ---------- ---------- ---------- bmy_12150T0/1-504 MWAGWGGALF RAKDRPLRGA CPRSPSPQPC RSSRRVGVVR PSTSKLEGGA BACU004103/1-314 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005128/1-399 ---------- ---------- ---------- ---------- ---------- ENSP00000274721/1-400 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006958/1-394 ---------- ---------- ---------- ---------- ---------- bmy_12150T0/1-504 RDPGWERVGA ARARRGGRRW WEAPAEETRS QSSSARGEGT PRLVQAERPG BACU004103/1-314 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005128/1-399 ---------- MARPPSPRPM LPALLLLL-- ----PLLLLS SVRAAGDHLP ENSP00000274721/1-400 ---------- MVRPLNPRPL PPVVLMLLLL LPPSPLPL-- ---AAGDPLP ENSBTAP00000006958/1-394 ---------- MARPQNPRPL PPALLLLL-- ----PLLL-- ---RAGDHLP bmy_12150T0/1-504 TPTVGVRTPP MARPPSRRPL LPALLLLL-- ----PLLL-- ---RAGDHLP BACU004103/1-314 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000005128/1-399 TEGRLVNSCI QARRKCQADP TCNATYHYLN SCASSISTSS PAEEPSVPED ENSP00000274721/1-400 TESRLMNSCL QARRKCQADP TCSAAYHHLD SCTSSISTPL PSEEPSVPAD ENSBTAP00000006958/1-394 TEGRFTNSCI QARRKCQADP TCNATYHYLN SCASSISTSS PAEEPLVPED bmy_12150T0/1-504 TEGRLMNSCI QARRKCQADP TCNATYHYLN SCASSISTSS PAEEPSVPED BACU004103/1-314 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000005128/1-399 CMEAAQQLRN SSLMSCTCHR RMKNQATCLD IYWTVHPARS LGDYELDVSP ENSP00000274721/1-400 CLEAAQQLRN SSLIGCMCHR RMKNQVACLD IYWTVHRARS LGNYELDVSP ENSBTAP00000006958/1-394 CMEAAQQLRN SSLMSCTCHR RMKNQATCLD IYWTIHPARS LGDYELDVSP bmy_12150T0/1-504 CMEAAQQLRN SSLMSCTCHR RMKNQATCLD IYWTVHPARS LGDYELDVSP BACU004103/1-314 -MEAAQQLRN SSLMSCTCHR HMKNQATCLD IYWTVHPARS LGDYELDVSP 251 300 ENSTTRP00000005128/1-399 YEDTVTRKPW KMNFSKLNML KPXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000274721/1-400 YEDTVTSKPW KMNLSKLNML KPDSDLCLKF AMLCTLNDKC DRLRKAYGEA ENSBTAP00000006958/1-394 YEDTVTRKPW KMNLSKLNML IPDSDLCLKF AMLCTLNDKC DRLRKAYGEA bmy_12150T0/1-504 YEDTVTRKPW KMNLSKLNML KPDSDLCLKF AMLCTLNDKC DRLRKAYGEV BACU004103/1-314 YEDTVTRKPW KMNLSKLNML KPDSDLCLKF AMLCTLNDKC DRLRKAYGEA 301 350 ENSTTRP00000005128/1-399 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000274721/1-400 CSGPHCQRHV CLRQLLTFFE KAAEPHAQGL LLCPCAPNDR GCGERRRNTI ENSBTAP00000006958/1-394 CSGSRCQRHT CQRQLRAFFE KASEPHSQGL LLCPCAPTDQ GCGQRRRNTI bmy_12150T0/1-504 CSGSRCQRHT CQRQLRSFFE KASEPHAQGL LLCPCAPTDQ GCGQRRRNTI BACU004103/1-314 CSGSRCQRHT CQRQLRSFFE KASEPHAQGL LLCPCAPTDQ GCGQRRRNTI 351 400 ENSTTRP00000005128/1-399 XXXXXXXXXX XXXXXXXXXX XXXXXXXSRL ADFQTHCHPM DILGTCATEQ ENSP00000274721/1-400 APNCALPPVA PNCLELRRLC FSDPLCRSRL VDFQTHCHPM DILGTCATEQ ENSBTAP00000006958/1-394 APSCALPSEA PNCLELRHVC VSDPLCRSRL ADFQTHCHPM DILGTCATEQ bmy_12150T0/1-504 APSCSLPSEA PNCLELWHIC VSDPLCRSRL ADFQTHCHPM DILGTCATEQ BACU004103/1-314 APSCSLPSEA PNCLELWHIC VSDPLCRSRL ADFQTHCHPM DILGTCATEQ 401 450 ENSTTRP00000005128/1-399 SKCLRAYMGL IGTAMTPNFV SNVNASVALS CTCRGSGNLQ EECEQLEESF ENSP00000274721/1-400 SRCLRAYLGL IGTAMTPNFV SNVNTSVALS CTCRGSGNLQ EECEMLEGFF ENSBTAP00000006958/1-394 SRCLRAYMGL IGTALTPNFV SNINASVALS CTCRGSGNLQ EECERLEESF bmy_12150T0/1-504 SKCLRAYMGL IGTAMTPNFV SNVNASVALS CTCRGSGNLQ EECERLEESF BACU004103/1-314 SKCLRAYMGL IGTAMTPNFV SNVNASVALS CTCRGSGNLQ EECERLEESF 451 500 ENSTTRP00000005128/1-399 SRNPCLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNKNP ALRPQPWVPS ENSP00000274721/1-400 SHNPCLTEAI AAKMRFHSQL FSQDWPHPTF AVMAHQNENP AVRPQPWVPS ENSBTAP00000006958/1-394 SHNPCLMEAI SAKMRFHSQL FSQDWAASTF SVMERQNKNP ALRPQPWVPT bmy_12150T0/1-504 SRNPCLMEAI AAKMHFHSQL FSQDWTASTF SPMERQNKNP ALRPQPWVPS BACU004103/1-314 SRNPCLMEAI AAKMHFHSQL FSQDWTASTF SPMERQNKNP ALRPQPWVPS 501 550 ENSTTRP00000005128/1-399 LFSCTLTLIL LLSLW ENSP00000274721/1-400 LFSCTLPLIL LLSLW ENSBTAP00000006958/1-394 LFSCTLTLIL LSSLW bmy_12150T0/1-504 LFSFTLTLIL LLSLW BACU004103/1-314 LFSFTLTLIL LLSLW