KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:56 2014 Check: 00 .. Name: ENSP00000303452/1-242 Len: 310 Check: 5837 Weight: 1.00 Name: ENSBTAP00000006982/1-241 Len: 310 Check: 3695 Weight: 1.00 Name: ENSTTRP00000009375/1-236 Len: 310 Check: 2646 Weight: 1.00 Name: bmy_16384T0/1-294 Len: 310 Check: 337 Weight: 1.00 Name: BACU015196/1-206 Len: 310 Check: 414 Weight: 1.00 // 1 50 ENSP00000303452/1-242 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006982/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009375/1-236 ---------- ---------- ---------- ---------- ---------- bmy_16384T0/1-294 RPLPADLTRA AASRRYKQQP RREAGSRRPG SCERSPTPDP PTPDPKTPDR BACU015196/1-206 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000303452/1-242 ---------- -------MPG PWLLLALALT LNLTGVPGGR AQPEAAQQEA ENSBTAP00000006982/1-241 ---------- -------MPG SWFLLAMALT LTLTGVPGGR AQLDVAQQEA ENSTTRP00000009375/1-236 ---------- -------MSG PWFLLAIVLT LTLTGVPGGR AQPEVAQQEA bmy_16384T0/1-294 SPGSRTSPRS SRRAGATMSG PWFLLAMVLT LTLTGV---R AQPEVAQQEA BACU015196/1-206 ---------- -------MSG PWFLLAMVLT LTLSGV---R AQPEVAQQEA 101 150 ENSP00000303452/1-242 VTAAEHPGLD DFLRQVERLL FLRENIQRLQ GDQGEH-SAS QIFQSDWLSK ENSBTAP00000006982/1-241 DLSEQQ-GLE DLLRQAERLL LLREDLQRLR EDQDDSVSES QIFQPDWFSK ENSTTRP00000009375/1-236 AMAAEQLGLD DLLRQAEPLL LLREDLQRLR ENQEDSESES QIFQPYWLSK bmy_16384T0/1-294 AIAAEQLGLD DLLRQAEPLL LLREDLQRLR EDQEDSESES QIFQPHWLSK BACU015196/1-206 AIAAEQLGLD DLLGQAEPLL LLREDLQRLR EDQEDSESES QIFQPHWLSK 151 200 ENSP00000303452/1-242 RQHPGKREEE EEEGVEEEEE EEGGAVGPHK RQHPGRREDE ASWSVDVTQH ENSBTAP00000006982/1-241 RQHPGKREEE EADEA-VEGE EEGGAAGLHK RQHPGRRGDV AAWAVDAGQQ ENSTTRP00000009375/1-236 RQHPGKREEE SEEGV--EEE EEGGAVGPHK RQHTGRQEEV AAWPEDISQQ bmy_16384T0/1-294 RQHPGKREEE FEEGV-EEEE EEGGAVGPHK RQHTGRQEDV AAWSEDVSQQ BACU015196/1-206 RQHPGKREEE LEEGV-EEEE EEGGAVGPH- ---------- ---------- 201 250 ENSP00000303452/1-242 KRQHPGRRSP WLAYAVPKRQ HPGRRLADPK AQRSWEEEEE EEEREEDLMP ENSBTAP00000006982/1-241 KRQHPGRRAS WLGYAVTKRQ HPGRRLVDPR AQRSWEEAGE DEDEGGELMS ENSTTRP00000009375/1-236 KRQHPGRRSS WLGYTFTKRQ HPGRRLADPQ AQSSWEEEEE E----GELMP bmy_16384T0/1-294 KRQHPGRRSS WLGYTSTKRQ HPGRRLVDPQ AQSSWEEEEE E----GELMP BACU015196/1-206 KRQHPGRRSS WLGYTFTKRQ HPGRRLVDPQ AQSSWEEEEE E----GELMP 251 300 ENSP00000303452/1-242 EKRQHPGKRA LGGPCGPQGA YGQAGLLLGL LDDLSRSQGA EEKRQHPGRR ENSBTAP00000006982/1-241 EKRQHPGKRA LGSLCGPRGP CGQASLLLGL LDDLSRGQGA EEKRQHPGRR ENSTTRP00000009375/1-236 EKRQHPGKRA LGSPCGLWGS CGQASLLLGL LDDLSRGQGD EEKRQHPGRR bmy_16384T0/1-294 EKRQHPGKRA LGSPCGPWGS CGQASLLLGL LDDLSRGQGA EEKRQHPGRR BACU015196/1-206 EKRQHPGKRA LGSPCGPRGS CGQASLLLGL LDDLSRGQGA EEKRQHPGRR 301 350 ENSP00000303452/1-242 AAWVREPLEE ENSBTAP00000006982/1-241 AAWASEPLEE ENSTTRP00000009375/1-236 AA-AREPLEE bmy_16384T0/1-294 SA-------- BACU015196/1-206 SA--------