KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:58 2014 Check: 00 .. Name: ENSTTRP00000012569/1-994 Len: 1292 Check: 5024 Weight: 1.00 Name: ENSP00000332118/1-998 Len: 1292 Check: 3957 Weight: 1.00 Name: ENSBTAP00000006988/1-997 Len: 1292 Check: 4031 Weight: 1.00 Name: BACU016562/1-1179 Len: 1292 Check: 965 Weight: 1.00 Name: bmy_10412T0/1-1077 Len: 1292 Check: 5409 Weight: 1.00 // 1 50 ENSTTRP00000012569/1-994 MARARPPPPP P--PPGLLPL LSPLLLL-PL LLPSGCRALE ETLMDTKWVT ENSP00000332118/1-998 MARARPPPPP S-PPPGLLPL LPPLLLLPLL LLPAGCRALE ETLMDTKWVT ENSBTAP00000006988/1-997 MARARPPPLP P-LPPGLLPL LSPLLLL-PL LLPAGCRALE ETLMDTKWVT BACU016562/1-1179 ---------- ---------- ---------- ---------- ---------- bmy_10412T0/1-1077 MARARPPPPP PPPPPGLLPL LSPLLLLLPL LLPSGCQALE ETLMDTKWVT 51 100 ENSTTRP00000012569/1-994 SELAWTSHPE SGWEEVSGYD EAMNPIRTYQ VCNVRESSQN NWLRTGFIWR ENSP00000332118/1-998 SELAWTSHPE SGWEEVSGYD EAMNPIRTYQ VCNVRESSQN NWLRTGFIWR ENSBTAP00000006988/1-997 SELAWTSHPE SGWEEVSGYD EAMNPIRTYQ VCNVRESSQN NWLRTGFIWR BACU016562/1-1179 ---------- ---------- --MNPIRTYQ VCNVRESSQN NWLRTGFIWR bmy_10412T0/1-1077 SELAWTSHPE SGWEEVSGYD EAMNPIRTYQ VCNVRESSQN NWLRTGFIWR 101 150 ENSTTRP00000012569/1-994 QDVQRVYVEL KFTVRDCNSI PNIPGSCKET FNLFYYEADS DVASASSPFW ENSP00000332118/1-998 RDVQRVYVEL KFTVRDCNSI PNIPGSCKET FNLFYYEADS DVASASSPFW ENSBTAP00000006988/1-997 RDVQRVYVEL KFTVRDCNSI PNIPGSCKET FNLFYYEADS DVASASSPFW BACU016562/1-1179 QDVQRVYVEL KFTVRDCNSI PNIPGSCKET FNLFYYEADS DVASASSPFW bmy_10412T0/1-1077 QDVQRVYVEL KFTVRDCNSI PNIPGSCKET FNLFYYEADS DVASASSPFW 151 200 ENSTTRP00000012569/1-994 MENPYVKVDT IAPDESFSRL DAGRVNTKVR SFGPLSKAGF YLAFQDQGAC ENSP00000332118/1-998 MENPYVKVDT IAPDESFSRL DAGRVNTKVR SFGPLSKAGF YLAFQDQGAC ENSBTAP00000006988/1-997 MENPYVKVDT IAPDESFSRL DAGRVNTKVR SFGPLSKAGF YLAFQDQGAC BACU016562/1-1179 MENPYVKVDT IAPDESFSRL DAGRVNTKVR SFGPLSKAGF YLAFQDQGAC bmy_10412T0/1-1077 MENPYVKVDT IAPDESFSRL DAGRVNTKVR SFGPLSKAGF YLAFQDQGAC 201 250 ENSTTRP00000012569/1-994 MSLISVRAFY KKCASTTAGF ALFPETLTGA EPTSLVIAPG TCIANAVEVS ENSP00000332118/1-998 MSLISVRAFY KKCASTTAGF ALFPETLTGA EPTSLVIAPG TCIPNAVEVS ENSBTAP00000006988/1-997 MSLISVRAFY KKCASTTAGF ALFPETLTGA EPTSLVIAPG TCIANAVEVS BACU016562/1-1179 MSLISVRAFY KKCASTTAGF ALFPETLTGA EPTSLVIAPG TCIANAVEVS bmy_10412T0/1-1077 MSLISVRAFY KKCASTTAGF ALFPETLTGA EPTSLVIAPG TCIANAVEVS 251 300 ENSTTRP00000012569/1-994 VPLKLYCNGD GEWMVPVGAC TCATGHEPAA KESQCR---- ---------- ENSP00000332118/1-998 VPLKLYCNGD GEWMVPVGAC TCATGHEPAA KESQCR---- ---------- ENSBTAP00000006988/1-997 VPLKLYCNGD GEWMVPVGAC TCATGHEPAA KESQCR---- ---------- BACU016562/1-1179 VPLKLYCNGD GEWMVPVGAC TCATGHEPAA KESQCR---- ---------- bmy_10412T0/1-1077 VPLKLYCNGD GEWMVPVGAC TCATGHEPAA KESQCRREWG LAWGGSGPQP 301 350 ENSTTRP00000012569/1-994 ---------- ---------- -------PCP PGSYKAKQGE GPCLPCPPNS ENSP00000332118/1-998 ---------- ---------- -------PCP PGSYKAKQGE GPCLPCPPNS ENSBTAP00000006988/1-997 ---------- ---------- -------PCP PGSYKAKQGE GPCLPCPPNS BACU016562/1-1179 ---------- ---------- -------PCP PGSYKAKQGE GPCLPCPPNS bmy_10412T0/1-1077 PAAPYPPLPT CQTGRDGGET SILFSPPACP PGSYKAKQGE GPCLPCPPNS 351 400 ENSTTRP00000012569/1-994 RTTSPASSIC TCHSNFYRAD SDSADSACTT VPSPPRGVIS NVNETSLTLE ENSP00000332118/1-998 RTTSPAASIC TCHNNFYRAD SDSADSACTT VPSPPRGVIS NVNETSLILE ENSBTAP00000006988/1-997 RTTSPAAGIC TCHNNFYRAD SDSADSACTT VPSPPRGVIS NVNETSLILE BACU016562/1-1179 RTTSPASSIC TCHSNFYRAD SDSADSACTT VPSPPRGVIS NVNETSLILE bmy_10412T0/1-1077 RTTSPASSIC TCHSNFYRAD SDSADSACTT VPSPPQGVIS NVNETSLILE 401 450 ENSTTRP00000012569/1-994 WSEPRDLGGR DDLLYNVICK KCRGA---GG ATTCPRGEDN VDFGLQQIGL ENSP00000332118/1-998 WSEPRDLGGR DDLLYNVICK KCHGA---GG ASACSRCDDN VEFVPRQLGL ENSBTAP00000006988/1-997 WSEPRDLGGR DDLLYNVICK KCHGG---PG TMTCSRCDDN VEFVPRQLGL BACU016562/1-1179 WSEPRDLGGR DDLLYNVICK KCHGGLGTGG TMTCSRCDDN VEFVPRQLGL bmy_10412T0/1-1077 WSEPRDLGGR DDLLYNVICK KCHGDLGAGG TMTCSRCDDN VEFVPRQLGL 451 500 ENSTTRP00000012569/1-994 TERRVHISRL MAHTRYTFEV QAVNGVSGKS PLPPRYAAVN ITTNQAAPSE ENSP00000332118/1-998 TERRVHISHL LAHTRYTFEV QAVNGVSGKS PLPPRYAAVN ITTNQAAPSE ENSBTAP00000006988/1-997 TERRVHVSHL LAHTRYTFEV QAVNGVSGKS PLPPRYAAVN ITTNQAAPSE BACU016562/1-1179 TERRVHISHL LAHTRYTFEV QAVNGVSGKS PLPPRYAAVN ITTNQAAPSE bmy_10412T0/1-1077 TEHRVHISHL LAHTRYTFEV QAVNGVSGKS PLPPCYAAVN ITTNQAAPSE 501 550 ENSTTRP00000012569/1-994 VPTLHLHSSS GSSLTLSWAP PERPNGVILD YEMKYFEKSE GIASTVTSQK ENSP00000332118/1-998 VPTLRLHSSS GSSLTLSWAP PERPNGVILD YEMKYFEKSE GIASTVTSQM ENSBTAP00000006988/1-997 VPTLRLHSSS GSSLTLSWAP PERPNGVILD YEMKYFEKSE GIASTVTSQK BACU016562/1-1179 VPTLHLHSSS GSSLTLSWAP PERPNGVILD YEMKYFEKSE GIASTVTSQK bmy_10412T0/1-1077 VPTLHLHSSS GSSLTLSWAP PERPNGVILD YEMKYFEKSE GIASTVTSQK 551 600 ENSTTRP00000012569/1-994 NSVQLDGLRP DARYVVQVRA RTVAGYGQYS HPAEFETTSE RGSGAQQLQE ENSP00000332118/1-998 NSVQLDGLRP DARYVVQVRA RTVAGYGQYS RPAEFETTSE RGSGAQQLQE ENSBTAP00000006988/1-997 NSVQLDGLRP DARYVVQVRA RTVAGYGQYS HPAEFETTSE RGSGAQQLQE BACU016562/1-1179 NSVQLDGLRP DARYVVQVRA RTVAGYGQYS HPAEFETTSE RGSGAQQLQE bmy_10412T0/1-1077 NSVQLDGLRP DARYVVQVRA RTVAGYGQYS HPAEFETTS- --SGAQQLQE 601 650 ENSTTRP00000012569/1-994 QLPLIVGSAT AGLVFVVAVV VIAVVCLRKQ RHSSDSEYTE KLQQYIAPGM ENSP00000332118/1-998 QLPLIVGSAT AGLVFVVAVV VIAIVCLRKQ RHGSDSEYTE KLQQYIAPGM ENSBTAP00000006988/1-997 QLPLIVGSAT AGLVFVVAVV VIAVVCLRKQ RHSSDSEYTE KLQQYIAPGM BACU016562/1-1179 QLPLIVGSAT AGLVFVVAVV VIAVVCLRKQ RHSSDSEYTE KLQQYIAPGM bmy_10412T0/1-1077 QLPLIVGSAT AGLVFVVAVV VIAVVCLRKQ RHSSDSEYTE KLQQYIAPGM 651 700 ENSTTRP00000012569/1-994 KVYIDPFTYE DPNEAVREFA KEIDVSCVKI EEVIGAGEFG EVCRGRLKQP ENSP00000332118/1-998 KVYIDPFTYE DPNEAVREFA KEIDVSCVKI EEVIGAGEFG EVCRGRLKQP ENSBTAP00000006988/1-997 KVYIDPFTYE DPNEAVREFA KEIDVSCVKI EEVIGAGEFG EVCRGRLKQP BACU016562/1-1179 KVYIDPFTYE DPNEAVREFA KEIDVSCVKI EEVIGAGEFG EVCRGRLKQP bmy_10412T0/1-1077 KVYIDPFTYE DPNEAVREFA KEIDVSCVKI EEVIGAGEFG EVCRGRLKQP 701 750 ENSTTRP00000012569/1-994 GRREVFVAIK TLKVGYTERQ RRDFLSEASI MGQFDHPNII RLEGVVTKSR ENSP00000332118/1-998 GRREVFVAIK TLKVGYTERQ RRDFLSEASI MGQFDHPNII RLEGVVTKSR ENSBTAP00000006988/1-997 GRREVFVAIK TLKVGYTERQ RRDFLSEASI MGQFDHPNII RLEGVVTKSR BACU016562/1-1179 GRREVFVAIK TLKVGYTERQ RRDFLSEASI MGQFDHPNII RLEGVVTKSR bmy_10412T0/1-1077 GRREVFVAIK TLKVGYTERQ RRDFLSEASI MGQFDHPNII RLEGVVTKSR 751 800 ENSTTRP00000012569/1-994 PVMILTEFME NCALDSFLRL NDGQFTVIQL VGMLRGIAAG MKYLSEMNYV ENSP00000332118/1-998 PVMILTEFME NCALDSFLRL NDGQFTVIQL VGMLRGIAAG MKYLSEMNYV ENSBTAP00000006988/1-997 PVMILTEFME NCALDSFLRL NDGQFTVIQL VGMLRGIAAG MKYLSEMNYV BACU016562/1-1179 PVMILTEFME NCALGSLLRL NDGQFTVIQL VGMLRGIAAG MKYLSEMNYV bmy_10412T0/1-1077 PVMILTEFME NCALDSFLRL NDGQFTVIQL VGMLRGIAAG MKYLSEMNYV 801 850 ENSTTRP00000012569/1-994 HRDLAARNIL VNSNLVCKVS DFGLSRFLED DPSDPTYTSS L--------- ENSP00000332118/1-998 HRDLAARNIL VNSNLVCKVS DFGLSRFLED DPSDPTYTSS L--------- ENSBTAP00000006988/1-997 HRDLAARNIL VNSNLVCKVS DFGLSRFLED DPSDPTYTSS L--------- BACU016562/1-1179 HRDLAARNIL VNSNLVCKVS DFGLSRFLED DPSDPTYTSS LVHEAAGRET bmy_10412T0/1-1077 HRDLAARNIL VNSNLVCKVS DFGLSRFLED DPSDPTYTSS LVHEAAGRET 851 900 ENSTTRP00000012569/1-994 ---------- ---------- --------GG KIPIRWTAPE AIAYRKFTSA ENSP00000332118/1-998 ---------- ---------- --------GG KIPIRWTAPE AIAYRKFTSA ENSBTAP00000006988/1-997 ---------- ---------- --------GG KIPIRWTAPE AIAYRKFTSA BACU016562/1-1179 GGGANQAGAR GWGRASRHRV KGVCPPNQGG KIPIRWTAPE AIAYRKFTSA bmy_10412T0/1-1077 GGGANQAGAR GWGRASRHRV KGVCPPNQGG KIPIRWTAPE AIAYRKFTSA 901 950 ENSTTRP00000012569/1-994 SDVWSYGIVM WDVMSYGERP YWDMSNQDVI HAMEQDYGL- -PMDCPTALH ENSP00000332118/1-998 SDVWSYGIVM WEVMSYGERP YWDMSNQDVI NAVEQDYRLP PPMDCPTALH ENSBTAP00000006988/1-997 SDVWSYGIVM WEVMSYGERP YWDMSNQDVI NAVEQDYRLP PPMDCPTALH BACU016562/1-1179 SDVWSYGIVM WEVMSYGERP YWDMSNQDVI NAVEQDYRLP PPMDCPTALH bmy_10412T0/1-1077 SDVWSYGIVM WEVMSYGERP YWDMSNQDVI NAVEQDYRLP PPMDCPTALH 951 1000 ENSTTRP00000012569/1-994 QLMLDCWVRD RNLRPKFSQI VNTLDKLIRN AASLKVIASA QSGMSQPLLD ENSP00000332118/1-998 QLMLDCWVRD RNLRPKFSQI VNTLDKLIRN AASLKVIASA QSGMSQPLLD ENSBTAP00000006988/1-997 QLMLDCWVRD RNLRPKFSQI VNTLDKLIRN AASLKVIASA QSGMSQPLLD BACU016562/1-1179 QLMLDCWVRD RNLRPKFSQI VNTLDKLIRN AASLKVIASA QSGMSQPLLD bmy_10412T0/1-1077 QLMLDCWVRD RNLRPKFSQI VNTLDKLIRN AASLKVIASA QSGMSQPLLD 1001 1050 ENSTTRP00000012569/1-994 RTVPDYTTFT TVGDWLDAIK MGRYKESFVS AGFASFDLVA QMTAEDLLRI ENSP00000332118/1-998 RTVPDYTTFT TVGDWLDAIK MGRYKESFVS AGFASFDLVA QMTAEDLLRI ENSBTAP00000006988/1-997 RTVPDYTTFT TVGDWLDAIK MGRYKESFVS AGFASFDLVA QMTAEDLLRI BACU016562/1-1179 RTVPDYTTFT TVGDWLDAIK MGRYKESFVS AGFASFDLVA QMTAEDLLRI bmy_10412T0/1-1077 RTVPDYTTFT TVGDWLDAIK MGRYKESFVS AGFASFDLVA QMTAEDLLRI 1051 1100 ENSTTRP00000012569/1-994 GVTLAGHQKK ILSSIQDMRL QMNQTLPVQV ---------- ---------- ENSP00000332118/1-998 GVTLAGHQKK ILSSIQDMRL QMNQTLPVQV ---------- ---------- ENSBTAP00000006988/1-997 GVTLAGHQKK ILSSIQDMRL QMNQTLPVQV ---------- ---------- BACU016562/1-1179 GVTLAGHQKK ILSSIQDMRL QMNQTLPVQE VCPKPLHIED GLGEGVMTPP bmy_10412T0/1-1077 GVTLAGHQKK ILSSIQDMRL QMNQTLPVQV ---------- ---------- 1101 1150 ENSTTRP00000012569/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000332118/1-998 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006988/1-997 ---------- ---------- ---------- ---------- ---------- BACU016562/1-1179 KPLGAQAFLF SSGGSPPPQT WLFFSAGGPG TVRTPEMSVL LLPPAAVAGV bmy_10412T0/1-1077 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000012569/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000332118/1-998 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006988/1-997 ---------- ---------- ---------- ---------- ---------- BACU016562/1-1179 FLNRCRTPDT GTLGCASWAI NQATSPSLLT ITSTITTNST STTLSTSIIV bmy_10412T0/1-1077 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000012569/1-994 ---------- ---------- ---------- ---------- ---------- ENSP00000332118/1-998 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006988/1-997 ---------- ---------- ---------- ---------- ---------- BACU016562/1-1179 STMTSTSTTI PTFTATTSTT TITSISTTII TSSSFTITTI TSTNIATFLT bmy_10412T0/1-1077 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000012569/1-994 ---------- ---------- ---------- ---------- -- ENSP00000332118/1-998 ---------- ---------- ---------- ---------- -- ENSBTAP00000006988/1-997 ---------- ---------- ---------- ---------- -- BACU016562/1-1179 STISTTITIP TTTTTTPLIS FNTTVTCYHQ HSYPAHPYLC PF bmy_10412T0/1-1077 ---------- ---------- ---------- ---------- --