KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:00 2014 Check: 00 .. Name: ENSTTRP00000007295/1-980 Len: 986 Check: 5733 Weight: 1.00 Name: ENSP00000261520/1-982 Len: 986 Check: 7038 Weight: 1.00 Name: ENSBTAP00000007009/1-981 Len: 986 Check: 7703 Weight: 1.00 Name: bmy_04599T0/1-610 Len: 986 Check: 6257 Weight: 1.00 Name: BACU001028/1-898 Len: 986 Check: 1713 Weight: 1.00 // 1 50 ENSTTRP00000007295/1-980 MSSMMAMGEP RLNWDVSPKN GLKTFFSREN YKDHSMAPSL KELCILSSRR ENSP00000261520/1-982 MSSKMVISEP GLNWDISPKN GLKTFFSREN YKDHSMAPSL KELRVLSNRR ENSBTAP00000007009/1-981 MTSMMAMGEP RLNWDVSPKN GLKTFFSREN YKDQSMAPSL KELCILSSRR bmy_04599T0/1-610 ---------- ---------- ---------- ---------- ---------- BACU001028/1-898 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007295/1-980 IGENLNASAS SVETEPAVSS ATQAKEKVKT TVGMVLLPKP RVPYPRFSRF ENSP00000261520/1-982 IGENLNASAS SVENEPAVSS ATQAKEKVKT TIGMVLLPKP RVPYPRFSRF ENSBTAP00000007009/1-981 IGENLNASAG SVENEPTVNS AAQAKEKVKT TVGMVLLPKP RVPYPRFSRF bmy_04599T0/1-610 ---------- ---------- ---------- ---------- ---------- BACU001028/1-898 ---------- ---------- ---------- ---MVLLPKP RVPYPRFSRF 101 150 ENSTTRP00000007295/1-980 SQREQRNYVD LLVKYAKIPV SSKAVGINKN EYLQYLXXXX XXXXXXXXXX ENSP00000261520/1-982 SQREQRSYVD LLVKYAKIPA NSKAVGINKN DYLQYLDMKK HVNEEVTEFL ENSBTAP00000007009/1-981 SQREQRNYVD LLVKYAKVPP NSKTVGINKN DYLQYLEMKK HVNEEVTEFL bmy_04599T0/1-610 ---------- ---------- ---------- ---------- ---------- BACU001028/1-898 SQREQRNYVD LLVKYAKIPA SSKAVGINKN DYLQYLDMKK HVNEEVTEFL 151 200 ENSTTRP00000007295/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXXQILK ACIEQVKKYP EFYTLHEVTS ENSP00000261520/1-982 KFLQNSAKKC AQDYNMLSDD ARLFTEKILR ACIEQVKKYS EFYTLHEVTS ENSBTAP00000007009/1-981 KFLQNSAKKC AQDYNMLSDD ACLVTEQILK ACIEQVKKYP EFYTLHEVTS bmy_04599T0/1-610 ---------- ---------- ---------- ---------- ---------- BACU001028/1-898 KFLQNSAKKC AQDYNMLSDN ARLFTEQILK ACIEQVKKYP EFYTLHEVTS 201 250 ENSTTRP00000007295/1-980 LMGFFPFRIE MGLKLEKTLL ALGSVKYVKT VFPSMPAKLQ LSKD-IPTTE ENSP00000261520/1-982 LMGFFPFRVE MGLKLEKTLL ALGSVKYVKT VFPSMPIKLQ LSKDDIATIE ENSBTAP00000007009/1-981 LMGFFPFRIE MGFKLEKTLL ALGSVKYVKT VFPSMPAKLQ LSKDTIPAIE bmy_04599T0/1-610 ---------- MGLKLEKTLL ALGSVKYVKT VFPSMPAKLQ LSKDNIPTTE BACU001028/1-898 LMGFFPFRIE MGLKLEKTLL ALGSVKYVKT VFPSMPAKLQ LSKDNIPTTE 251 300 ENSTTRP00000007295/1-980 TPEQTAAAMH YDISKDPNAE KLVARYHPQI ALTSQALFTL LNNHGPSYKE ENSP00000261520/1-982 TSEQTAEAMH YDISKDPNAE KLVSRYHPQI ALTSQSLFTL LNNHGPTYKE ENSBTAP00000007009/1-981 TPEQIAAAMH YDISEDPNAE KLVARYHPQI ALTSQSLFTL LNNHGPSYKE bmy_04599T0/1-610 TPEQTAAAMH YDISKDSNAE KLVARYHPQI ALTSQALFTL LNNHGPSYKE BACU001028/1-898 TPEQTAAAMH YDISKDPNAE KLVARYHPQI ALTSQALFTL LNNHGPSYKE 301 350 ENSTTRP00000007295/1-980 QWEIPVCIQV IPVTGSKPVK VIYINSPLPQ KKMTMRERNQ IFHEVPLKCM ENSP00000261520/1-982 QWEIPVCIQV IPVAGSKPVK VIYINSPLPQ KKMTMRERNQ IFHEVPLKFM ENSBTAP00000007009/1-981 QWEIPVCIQV IPVAGSKPIK VIYINSPLPQ KKMTMRERNQ IFHEVPLKFM bmy_04599T0/1-610 QWEIPVCIQV IPVAGSKPVK VIYINSPLPQ KKMTMRERNQ IFHEVPLKFM BACU001028/1-898 QWEIPVCIQV IPVAGSKPVK VIYINSPLPQ KKMTMRERNQ IFHEVPLKFM 351 400 ENSTTRP00000007295/1-980 MSKNTTVPVS AVFMDKPEDY ISEMEMSYEV NECRKIETHE NLDLDFDDDV ENSP00000261520/1-982 MSKNTSVPVS AVFMDKPEEF ISEMDMSCEV NECRKIESLE NLYLDFDDDV ENSBTAP00000007009/1-981 MSKNTSVPVS AVFMDKPEEY ISEMDISYEV NECRKIETLE NLDLEFDDDV bmy_04599T0/1-610 MSKNTTVPVS AVFMDKPEDY ISEMDMSYEV NECRKIETHE NLDLDFDDDV BACU001028/1-898 MSKNTTVPVS AVFMDKPEDY ISEMDMSYEV NECRKIETHE NLDLDFDDDV 401 450 ENSTTRP00000007295/1-980 TELETFGVTT TKPSKSPSPA STSIVPNVTE MPTAPSIAIT SEAPIAPDIT ENSP00000261520/1-982 TELETFGVTT TKVSKSPSPA STSTVPNMTD APTAPKAGTT TVAPSAPDIS ENSBTAP00000007009/1-981 TELETFGATT TKPSKSPSPA STSTVAPMTD TLTAPSIADT SEAPTSPDIS bmy_04599T0/1-610 TELETFGVTT TKPSKSPSPA STSIVPNMTD MPTAPSIAIA SEAPTAPDIT BACU001028/1-898 TELETFGVTT TKPSKSPSPA STSIVPNMTD MPPAPSIAIA SEAPTAPDIT 451 500 ENSTTRP00000007295/1-980 AHSRSISQIL MEQLQKEKQL VTGM-DNGPE ECKNKDDQGL IPCGGNVSNS ENSP00000261520/1-982 ANSRSLSQIL MEQLQKEKQL VTGM-DGGPE ECKNKDDQGF ESC-EKVSNS ENSBTAP00000007009/1-981 AHSRSLSQIL MEQLQKEKQL VTGMIDSGPE ESKNKDDQRF IPCGEKVSNS bmy_04599T0/1-610 AHSRSLSQIL MEQLQKEKQL VTGM-DNGPE ECKNKDDQGF IPCGENVSDS BACU001028/1-898 AHSRSLSQIL MEQLQKEKQL VTGM-DTGPE ECKNKDDQGF IPCGENVSNS 501 550 ENSTTRP00000007295/1-980 EKSLVQDSDL KTYDA-HLDS SSEIETSNKN DMTSDIECVD -ERVNVPENT ENSP00000261520/1-982 DKPLIQDSDL KTSDALQLEN SQEIETSNKN DMTIDILHAD GERPNVLENL ENSBTAP00000007009/1-981 DKPLVQDSDL KTSDPLQLES SMEIETSSKN DMATEMESVD -ERVNVLENT bmy_04599T0/1-610 EKSLVQDSDL KTSGALQLES SSEIETSNKN DMDSDMECVD -ERVNVPENT BACU001028/1-898 EKSLVQDSDL KTSDALQLES SSEIETSNKN DMASDMECVD -ERVNVPENT 551 600 ENSTTRP00000007295/1-980 DNNSKEQPVT SEAAKTEDVI LCHSDTDEDC LIIDTECQNN SNGKTADTGY ENSP00000261520/1-982 D-NSKEKTVG SEAAKTEDTV LCSSDTDEEC LIIDTECKNN SDGKTAVVGS ENSBTAP00000007009/1-981 DTNSKEKTVT SEAANTEDVV LDSSDTDEDC LIIDMECQSN SHGKTAEVGS bmy_04599T0/1-610 DNNSKEKAVT SEAAKTEDVI LCHSDTDEDC LIIDTECQNN SNGKTADMGS BACU001028/1-898 DSNSKEKTVT SEAAKTEDVI LCHSDTDEDC LIIDTECQNN SNGKTTDMGS 601 650 ENSTTRP00000007295/1-980 NLSSKPASLN SSSGQASVGN QTNTTCSPEE SCVLKKPIKR VYKKFDPVGE ENSP00000261520/1-982 NLSSRPASPN SSSGQASVGN QTNTACSPEE SCVLKKPIKR VYKKFDPVGE ENSBTAP00000007009/1-981 NLSSKPASLN SSSGQTSTGN QTNSTC-PEE SCVLKKPIKR VYKKFDPVGE bmy_04599T0/1-610 NLSSKPASLD SSSGQASVGN QTNTTCSPEE SCVLKKPIKR VYKKFDPVGE BACU001028/1-898 NLSSKPASLD SSSGQASVGN QTNTTCSPEE SCVLKKPIKR VYKKFDPVGE 651 700 ENSTTRP00000007295/1-980 ILKMQDELLK PISRKIPEMP LMNSENSKQP PSSEQPSATS DASSWPKSIW ENSP00000261520/1-982 ILKMQDELLK PISRKVPELP LMNLENSKQP SVSEQLSGPS DSSSWPKSGW ENSBTAP00000007009/1-981 ILKMQDELLK PISRKIPELP LMNSENSKQP PISEQPSAPS DACSWPKSIW bmy_04599T0/1-610 ILKMQDELLK PISRKIPEMP LMNSENSKQP PSSEQXSATS DASSWPKSIW BACU001028/1-898 ILKMQDELLK PISRKIPEMP LMNSENSKQP PSSEQASATS DASSWPKSIW 701 750 ENSTTRP00000007295/1-980 PSVFQKPKGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261520/1-982 PSAFQKPKGR LPYELQDYVE DTSEYLAPQE GNFVYKLFSL QDLLLLVRCS ENSBTAP00000007009/1-981 PSAFQKPKGR LPYELQDYVE DTSEYVAPQE GNFVYKLFSL QDLLLLVRCS bmy_04599T0/1-610 PSAFQKPKGR LPYELQDYVE DTSEYVAPQE GNFVYKLFSL QDLLLLVRCS BACU001028/1-898 PSAFQKPKGR LPYELQDYVE DTSEYVAPQE GNFVYKLFSL QDLLLLVRCS 751 800 ENSTTRP00000007295/1-980 XXXXXXXXXX XXXXXXXXQF PVYVLPKVEY QACYGVEALT ESELCRLWTE ENSP00000261520/1-982 VQRIETRPRS KKRKKIRRQF PVYVLPKVEY QACYGVEALT ESELCRLWTE ENSBTAP00000007009/1-981 VQRIETRPRS KKRKKIRRQF PVYVLPKVEY QACYGVEALT ESELCRLWTE bmy_04599T0/1-610 VQRIETRPRS KKRKKIRRQF PVYVLPKVEY QACYGVEALT ESELCRLWTE BACU001028/1-898 VQRIETRPRS KKRKKIRRQF PVYVLPKVEY QACYGVEALT ESELCRLWTE 801 850 ENSTTRP00000007295/1-980 SLLHSNCSFY VGHIDTFTSK LFLLEEITSE ELKERLSALK ISSLFNILQH ENSP00000261520/1-982 SLLHSNSSFY VGHIDAFTSK LFLLEEITSE ELKEKLSALK ISNLFNILQH ENSBTAP00000007009/1-981 SLLHSNSSFY VGHIDAFTSK LFLLEEITSE ELKEKLSALK ISSLFNILQH bmy_04599T0/1-610 SLLHSNCSFY VG-------- ---------- ---------- ---------- BACU001028/1-898 SLLHSNCSFY VGHIDTFTSK LFLLEEITSE ELKERLSALK ISSLFNILQH 851 900 ENSTTRP00000007295/1-980 ILRKLSSLQE GSYLLSHAAE DSSLLIYKTS DGKVTRTAYN LHKTHYSLPG ENSP00000261520/1-982 ILKKLSSLQE GSYLLSHAAE DSSLLIYKAS DGKVTRTAYN LYKTHCGLPG ENSBTAP00000007009/1-981 ILRKLSSLQE GSYLLSHAAE DSSLLIYKTS DGKVTRTAYN LHKTHCGLPG bmy_04599T0/1-610 ---------- ---------- ---------- ---------K LCKRLCS--- BACU001028/1-898 ILRKLSSLQE GSYLLSHAAE DSSLLIYKTS DGKVTRTAYN LHKTHYSLPG 901 950 ENSTTRP00000007295/1-980 VPSSLSVPWV PLDPSLLLPY HIHHGRIPCT FPPKSQGPTT QQQKVGGTRM ENSP00000261520/1-982 VPSSLSVPWV PLDPSLLLPY HIHHGRIPCT FPPKSLDTTT -QQKIGGTRM ENSBTAP00000007009/1-981 VPSSLSVPWV PLDPSLLLPY HIHHGRIPCT FPPKSLGPTA -QQKIGGTRM bmy_04599T0/1-610 ---------- --------PF ---------- ---------- ---------- BACU001028/1-898 VPSSLSVPWV PLDPSLLLPY HIHHGRIPCT FPPKSLGPTT -QQKIGGTRM 951 1000 ENSTTRP00000007295/1-980 PTRSRRNSVS METKS--LPA QQVENEGVAP SKRKIT ENSP00000261520/1-982 PTRSHRNPVS METKSSCLPA QQVETEGVAP HKRKIT ENSBTAP00000007009/1-981 PTRSHRNSVS VETKS--LPA QQVENEGVAS SKRKIT bmy_04599T0/1-610 ---------- ---------- ---------- ------ BACU001028/1-898 PTRSRRNSVS METKS--LPA QQVENEGVAP SKRKIT