KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:31:01 2014  Check: 00 ..

 Name: ENSP00000300433/1-159     Len:    259  Check:  1012  Weight:  1.00
 Name: ENSBTAP00000007029/1-157  Len:    259  Check:  4867  Weight:  1.00
 Name: bmy_06722T0/1-143         Len:    259  Check:  8567  Weight:  1.00
 Name: BACU006428/1-255          Len:    259  Check:  3129  Weight:  1.00

//


                          1                                                   50
ENSP00000300433/1-159     ---------- ---------- ---------- -MSQAWVPGL APTLL----- 
ENSBTAP00000007029/1-157  ---------- ---------- ---------- -MSDTWVASL ---LL----- 
bmy_06722T0/1-143         ---------- ---------- ---------- --------ML ---IL----- 
BACU006428/1-255          MEHLGARADV AQKPPRNGCV PSPRTLQQGL AIITSLNHQL ---LLAPGGV 


                          51                                                 100
ENSP00000300433/1-159     ---------- ---------- ---------- -------FS- ---------- 
ENSBTAP00000007029/1-157  ---------- ---------- ---------- -------FG- ---------- 
bmy_06722T0/1-143         ---------- ---------- ---------- -------WD- ---------- 
BACU006428/1-255          RRAGTHDLEP QALEETANHR LLLDEAESSR HLELQHIWKS YSLCRQLHVD 


                          101                                                150
ENSP00000300433/1-159     ---------- -LLAGPQKIA AKCGLILACP KGFKCCGDSC CQE-----NE 
ENSBTAP00000007029/1-157  ---------- -LLAGLQQAA ATCGL-LTCP KGFKCCGSDC CQEYQLEQYD 
bmy_06722T0/1-143         ---------- -LLA------ ----V-STCP KGFNCCGNSC CQEYQPEQYE 
BACU006428/1-255          TPPPYCNSSP PLLAAGFRPL NPTWA-STCP KGFNCCGNSC CQEYQPEQYE 


                          151                                                200
ENSP00000300433/1-159     LFPGPVRIFV IIFLVILSVF CICGLAKCFC RNCREPEPDS PVDCRGPLEL 
ENSBTAP00000007029/1-157  FFSHPLRTSV IIFLIIILLL CIYGVTKHLY LNCRKSEQEA PT---ALPEQ 
bmy_06722T0/1-143         LFSGPLRIFV IVFLIIIPLL CICGLAKRFC RNCRKSEQDT PTDHEGPPER 
BACU006428/1-255          LFSGPLRIFV IVFLIIIPLL CICGLAKRFC RNCRKLEQDP PADHEGPPER 


                          201                                                250
ENSP00000300433/1-159     PSIIPPERVR VSLSAPPPPY SEVILKPSLG PTPTEPPPPY SFRPEEYTGD 
ENSBTAP00000007029/1-157  PPIAPVERVT APISEPPPPY SEIILKPVLG LPPLEPPPPY SFRPEEYAGF 
bmy_06722T0/1-143         PPITPAERVT ASISEPPPPY SEIILKPVVG LPPVEPPPPY SFRPEEHAGV 
BACU006428/1-255          PPITPAERVT ATISEPPPPY SEIILKPVVG LPPLEPPPPY SFRPEEHAGV 


                          251                                                300
ENSP00000300433/1-159     QRGIDNPAF 
ENSBTAP00000007029/1-157  CRGIDNSTF 
bmy_06722T0/1-143         HSGIDNPTF 
BACU006428/1-255          RSGIDNPTF