KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:02 2014 Check: 00 .. Name: BACU018216/1-256 Len: 332 Check: 4964 Weight: 1.00 Name: ENSP00000255476/1-272 Len: 332 Check: 7578 Weight: 1.00 Name: ENSBTAP00000007033/1-286 Len: 332 Check: 3430 Weight: 1.00 Name: bmy_03064T0/1-326 Len: 332 Check: 3018 Weight: 1.00 Name: ENSTTRP00000007474/1-241 Len: 332 Check: 6288 Weight: 1.00 // 1 50 BACU018216/1-256 ---------- ---------- ---------- ---------- -------LKG ENSP00000255476/1-272 ---------- ---------- ---------- ---------- -----MEAQG ENSBTAP00000007033/1-286 ---------- ---------- ---------- ---------- -----TEVQG bmy_03064T0/1-326 MFSCFLVLYV LEKDYRYNEQ PEISSMLFPY NRSLLWNFSA WGLSSTEVQA ENSTTRP00000007474/1-241 ---------- ---------- ---------- ---------- ---------- 51 100 BACU018216/1-256 WGRGPPPGLS STEVQAVSKG RAPPRGPRPC PSP-AAASQF TLLAMHPCGG ENSP00000255476/1-272 VAEGAGPGAA SGVPHPAALA PAAAPTLAPA SVA-AAASQF TLLVMQPCAG ENSBTAP00000007033/1-286 VTEGAGPGAA SGALRPGAPA PAPGQALTPA PVPGASASQF ALLVMHPCGG bmy_03064T0/1-326 VAEGAGPGAA SGALXPGAPA PAPGQARAPA PVP-AAASQF TLLVMRPCGG ENSTTRP00000007474/1-241 W--------- ---------- -------VPT PFP-VAAFQF TLLVMRPCGG 101 150 BACU018216/1-256 QDEAA----- ----ALG--- GPRLPVRYLC EVSGDGKGE- GEDEADLLDT ENSP00000255476/1-272 QDEAA----- ----APGGSV GAGKPVRYLC EGAGDGEEEA GEDEADLLDT ENSBTAP00000007033/1-286 QDEAAAEGVL RPAPALGGIG GPGKPVRYLC EVAGDGEEEA GEDEADLLDT bmy_03064T0/1-326 PDEAAAEGVL RQAPALGGSA GAGKPVRYLC EVAGDGEEEA GEDETDLLDT ENSTTRP00000007474/1-241 PDEAA----- ----ALGGSA GAGKPVRYLC EVAGDGEEEA GEDETDLLDT 151 200 BACU018216/1-256 T-PPGGGEST ASLEDLEDEG THSGGDGG-- ---------- --GGSVSKTC ENSP00000255476/1-272 SDPPGGGESA ASLEDLEDEE THSGGEGSSG GARRRGSG-- --GGSMSKTC ENSBTAP00000007033/1-286 SDPPGGGEST ASLEDLEDEE THSGGEGGGG GARRRGSGGG GGGGGLSKTC bmy_03064T0/1-326 SDPPGGGEST ASLEDLEDEE THSGGEGGSG GARRRGSG-- --GGSMSKTC ENSTTRP00000007474/1-241 SDPPGGGEST ASLEDLEDEE THSGGEGGSG GARRRGSG-- --GGSMSKTC 201 250 BACU018216/1-256 TYEGCSQTPS RVTRQRKPWT CKKHRNKMYK DKHKKKKSDQ ALNCGGGAAQ ENSP00000255476/1-272 TYEGCSETTS QVAKQRKPWM CKKHRNKMYK DKYKKKKSDQ ALNC-GGTAS ENSBTAP00000007033/1-286 TYEGCSETTS QVAKQRKPWM CKKHRNKMYK DKYKKKKSDQ ALNC-GGAAA bmy_03064T0/1-326 TYEGCSETTS QVAKQRKPWM CKKHRNKMYK DKYKKKKSDQ ALNC-SGAAQ ENSTTRP00000007474/1-241 TYEGCSETTS QVAKQRKPWM CKKHRNKMYK DKYKKKKSDQ ALNC-GGAAQ 251 300 BACU018216/1-256 AGSVGNVKLE ESADNILSTV QQRTGSFGDR PARPTLLEQV LNQKRLSLLR ENSP00000255476/1-272 TGSAGNVKLE ESADNILSIV KQRTGSFGDR PARPTLLEQV LNQKRLSLLR ENSBTAP00000007033/1-286 AGSSGNVKLE ESADNILSIV KQKTGSFGDR PARPTLLEQV LNQKRLSLLR bmy_03064T0/1-326 AGSAGNVKLE ESADNILSIV KQRTGSFGDR PARPTLLEQV LNQKRLSLLR ENSTTRP00000007474/1-241 AGSAGNVKLE ESADNILSIV KQRKGSFGDR PARPTLLEQV LNQKRLSLLR 301 350 BACU018216/1-256 SPEMVQFLQK RQQLLNQQVL EQRQQQFTGT SV ENSP00000255476/1-272 SPEVVQFLQK QQQLLNQQVL EQRQQQFPGT SM ENSBTAP00000007033/1-286 SPEVVQFLQK QQQLLNQQVL EQRQQQFPGT SV bmy_03064T0/1-326 SPEVVQFLQK QQQLLNQQVL EQRQQQFPGT SV ENSTTRP00000007474/1-241 SPEVVQFLQK QQQLLNQQVL EQRQQQFPGT SV