KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:05 2014 Check: 00 .. Name: ENSP00000469880/1-474 Len: 474 Check: 5062 Weight: 1.00 Name: ENSBTAP00000007054/1-451 Len: 474 Check: 7840 Weight: 1.00 Name: ENSTTRP00000001058/1-452 Len: 474 Check: 8983 Weight: 1.00 Name: bmy_06354T0/1-426 Len: 474 Check: 2798 Weight: 1.00 Name: BACU011059/1-452 Len: 474 Check: 2114 Weight: 1.00 // 1 50 ENSP00000469880/1-474 MISFCPDCGK SIQAAFKFCP YCGNSLPVEE HVGSQTFVNP HVSSFQGSKR ENSBTAP00000007054/1-451 MI--CPDCGK GIEATFKFCP YCGKPLPAEK HEGSQSFVKP FTSSSQGSRR ENSTTRP00000001058/1-452 MI-SCPDCGK DVEATFKFCP YCGKPLPTEE HEGSQTFVKP SMSSSQGSKK bmy_06354T0/1-426 MV-----PGK D--------- FCNSSL---- ---------H SVFLSLGSRR BACU011059/1-452 MV-FCPDCGK GVEATFKFCP YCGKPLPTEE HEGSQTFVKP SVSSSQGSRR 51 100 ENSP00000469880/1-474 GLNSSFETSP KKVKWSSTVT SPRLSLFSDG DSSESEDTLS SSERSKGSGS ENSBTAP00000007054/1-451 KTNTSSETSS KKVKWCSYAA SPSLPLPSEG KSSGSEDTLS TSGKPKGHLS ENSTTRP00000001058/1-452 RRNTSSEISP KKVKWPSCAS SPPSSLLSEG ESSESEDTFS TCEKPKGCWS bmy_06354T0/1-426 RMNTSSEISP KKVKWLSCAS SPPSSLLSEG DSSESEVTLS TCEKPKGCWS BACU011059/1-452 KTNTSSEISP KKVKWLSCTS SPPSSLLSEG NSSESEVTLS TCEKPKGCWS 101 150 ENSP00000469880/1-474 RPPTPKSSPQ KTRKSPQVTR GSPQKTSCSP QKTRQSPQTL KRSRVTTSLE ENSBTAP00000007054/1-451 RSPTPRS--- ---------- --------SP QTTRQSPQTL KRSRMTASLE ENSTTRP00000001058/1-452 RSPTSQS--- ---------- --------SP QTTRQSPQAL KRSRVTTSLK bmy_06354T0/1-426 RSPASQS--- ---------- --------SP QTTRQSPQTL KRSRMTTSLK BACU011059/1-452 RSPTSQS--- ---------- --------SP QTTRQSPQTL KRSRMTTSLK 151 200 ENSP00000469880/1-474 ALPTGTVLTD KSGRQWKLKS FQTRDNQGIL YEAAPTSTLT CDSGPQKQKF ENSBTAP00000007054/1-451 ALPVGTVLTD KSGQHWKLRC LQTRDDQGIL YEAESDSTTG SESSPQKQRF ENSTTRP00000001058/1-452 ALPERTVLID KSGQHWKLSC LQSRDGQGIL YEAEPDSTFA CESSLGKQRF bmy_06354T0/1-426 ALPVGTVLID KSGRHWKLRC LQSRDGQGIL YEAEPSSAFA CESSPQKQRF BACU011059/1-452 ALPVGTVLID KSGQHWKLRC LQSRDGQGIL YEAEPSSAFA CESSPQKQRF 201 250 ENSP00000469880/1-474 SLKLDAKDGR LFNEQNFFQR AAKPLQVNKW KKLYSTPLLA IPTCMGFGVH ENSBTAP00000007054/1-451 SLKLDAKDGR LFNEQNFFQR AAKPLQVNKW KKLYSIPQLA IPTCIGFGVH ENSTTRP00000001058/1-452 SLKLDAKDGR LFNEQNFFQR AAKPLQVNKW KKLHSTPQLA IPTCVGFGIH bmy_06354T0/1-426 SLKLDAKDGR LFNEQNCLQR AAKPLQVNKW KKRNSTPQLA IPTCVGFGVH BACU011059/1-452 SLKLDAKNGR LFIEQNFFQR AAKPLQVNKW KKRYSTPQLA IPTCVGFGVH 251 300 ENSP00000469880/1-474 QDKYRFLVLP SLGRSLQSAL DVSPKHVLSE RSVLQVACRL LDALEFLHEN ENSBTAP00000007054/1-451 QDKYRFLVFP TLGRSLQSIL DDFPKHVMSV RSVFQMACRL LDALEFLHEN ENSTTRP00000001058/1-452 QNKYRFLVFP ILGRSLQSIL DDYPKHVMSV RSVFQMACRL LDALEFLHEN bmy_06354T0/1-426 QNKYRFLVFP ILGRSLQSIL DDNPKHVMSV RSVFQMACRL LDALKFLHEN BACU011059/1-452 QNKYRFLVFP ILGRSLQSIL DDNPKHVMSV RSVFQMACRL LDALKFLHEN 301 350 ENSP00000469880/1-474 EYVHGNVTAE NIFVDPEDQS QVTLAGYGFA FRYCPSGKHV AYVEGSRSPH ENSBTAP00000007054/1-451 EYVHGNVTAE NIFVNPENLC QVTLAGYGFT FRYSPGGRHV AYTEGSRSPH ENSTTRP00000001058/1-452 EYVHGNVTAE NIFVNPEDLC QVTLAGYGFT FRYSPGGRHV EYNEGSRTPH bmy_06354T0/1-426 EYVHGNVTAE NIFVNPEDLC QVTLAGYGFT FRYSPDGRHV VYTEGSKSPH BACU011059/1-452 EYVHGNVTAE NIFVNPEDLC QVTLAGYGFT FRYSPDGRHV AYTEGSRSPH 351 400 ENSP00000469880/1-474 EGDLEFISMD LHKGCGPSRR SDLQSLGYCM LKWLYGFLPW TNCLPNTEDI ENSBTAP00000007054/1-451 EGHLEFISMD LHKGCGPSRR SDLQTLGYCL LKWLYGTLPW TNCLPNTEEI ENSTTRP00000001058/1-452 EGDLEFISMD LHKGCGPSRR GDLQTLGYCL LKWLYGTLPW TNCLPNTEDI bmy_06354T0/1-426 EGDLEFISMD LHKGCGPSRR SDLQTLGYCL LKWLYGTLPW TNCLPNTDDI BACU011059/1-452 EGDLEFISMD VHKGCGPSRR SDLQTLGYCL LKWLYGTLPW TKCLPNTEDI 401 450 ENSP00000469880/1-474 MKQKQKFVDK PGPFVGPCGH WIRPSETLQK YLKVVMALTY EEKPPYAMLR ENSBTAP00000007054/1-451 VKLKQKFLDN PEGLVGQCSR WITPSETLQE YLKVVMALQY EEKPPYSTLR ENSTTRP00000001058/1-452 MKLKQKFLDN PEGLVRQCSR WINTSETLQK YLKVVMALKY EEKPPYTALR bmy_06354T0/1-426 MKLKQKFLDN PEGLVRQCSR WTNTSETLQE YLKVVMALKY EEKPPYTALR BACU011059/1-452 MELKQKFLDN PEGLVGQRSH WINTSETLQE YLKVVMALKY EEKPPYTALR 451 500 ENSP00000469880/1-474 NNLEALLQDL RVSPYDPIGL PMVP ENSBTAP00000007054/1-451 NELEALLQDL RASAYDPLDL QVVP ENSTTRP00000001058/1-452 NNLKALLQDL RVSAYDPLDL QVVP bmy_06354T0/1-426 NNLEALLQDL RVSAYDPLDL QVVP BACU011059/1-452 NNLEALLQDL QVSAYDPLDL QVVP