KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:06 2014 Check: 00 .. Name: ENSTTRP00000005848/1-804 Len: 1237 Check: 5018 Weight: 1.00 Name: ENSP00000375857/1-808 Len: 1237 Check: 4885 Weight: 1.00 Name: ENSBTAP00000007057/1-660 Len: 1237 Check: 4403 Weight: 1.00 Name: bmy_18839T0/1-1234 Len: 1237 Check: 1224 Weight: 1.00 Name: BACU011008/1-860 Len: 1237 Check: 9446 Weight: 1.00 // 1 50 ENSTTRP00000005848/1-804 ------MTNA AAQNQEIDCL SPE--AQRL- ---------- ---------- ENSP00000375857/1-808 -----MTSPA AAQSREIDCL SPE--AQKL- ---------- ---------- ENSBTAP00000007057/1-660 ---------P EPGKEPLVCL L----TQSL- ---------- ---------- bmy_18839T0/1-1234 MILEACQSGG EAVSGGRDHL LREVVSSRIF APVPRGVRAE EGAGRTGWGG BACU011008/1-860 -----MTNPA AAQNQEIDCL SPE--AQRL- ---------- ---------- 51 100 ENSTTRP00000005848/1-804 -------AEA RLAAKRAARA EAREIRMKEL ERQQKE---- ---------- ENSP00000375857/1-808 -------AEA RLAAKRAARA EAREIRMKEL ERQQKE---- ---------- ENSBTAP00000007057/1-660 ---GLLQAEA RLAAKRAARA EAREIRMKEL ERQQKEIYQV QKKYYGLDTK bmy_18839T0/1-1234 ASPGLLQAEA RLAAKRAARA EAREIRMKEL ERQQQEIYQV QKKYYGLDTK BACU011008/1-860 -------AEA RLAAKRAARA EAREIRMKEL ERQQKEIYQV QKKYYGLDTK 101 150 ENSTTRP00000005848/1-804 --------ED SERYSRRSRR NTSASDEDDR VSAGSRGSLR ---------- ENSP00000375857/1-808 --------ED SERYSRRSRR NTSASDEDER MSVGSRGSLR ---------- ENSBTAP00000007057/1-660 WGDIEQWMED SERYSHRSRR NTSASDEDER MSVGSRGSLR SQPDLEYGGP bmy_18839T0/1-1234 WGDIEQWMED SERYSRRSRR STSASDEDER VSVGSRGSLR SQPDLEYGGP BACU011008/1-860 WGDIEQWMED SERYSRRSRR STSASDEDER VSVGSRGSLR ---------- 151 200 ENSTTRP00000005848/1-804 ---------- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007057/1-660 YAW------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 YAWDHTSAQH TGPRSLPKLR IDLLLNCNTR LPAEPRTKDE LTQVEVISPR BACU011008/1-860 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000005848/1-804 ---------- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 CLASRLLTGW DSRITSTKLE PKTAEESKCT QARAPHSMGT WHFLPSPSEC BACU011008/1-860 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000005848/1-804 ---------- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007057/1-660 ---------T NGYDGDLYGS QSLSRRSGRN SSYSGDGRFS TLSSSREDTL bmy_18839T0/1-1234 PVVTSDTKRT NGYDGELYGS QPLNRRSGRN SSYGGDSRFS TLSSSRENTL BACU011008/1-860 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000005848/1-804 ---------- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007057/1-660 GLSCSDLGLR HRGLAPKPLS AQNGN----- ---------- RASASDESSL bmy_18839T0/1-1234 GLSCSDFGLL SRGLASKPLS AQNGNRPSYM YGAARPAGSY RASVSDESSL BACU011008/1-860 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000005848/1-804 ---------- ---------- ---------- ---------- ---VEERPEK ENSP00000375857/1-808 ---------- ---------- ---------- ---------- ---VEERPEK ENSBTAP00000007057/1-660 GGARRGSACG SQA----ASE LSGHFKSSSR ASSRASSARA SPVVEERPEK bmy_18839T0/1-1234 GGARRSSACG SHALGGQPSE HGGHFKSSSR TSSRASSARA SPVVEERPEK BACU011008/1-860 ---------- ---------- ---------- ---------- ---VEERPEK 401 450 ENSTTRP00000005848/1-804 DFTEKGSRGL PGLSAATLAS LGGTSSRRGS GDTSISIDTE ASIREIKELN ENSP00000375857/1-808 DFTEKGSRNM PGLSAATLAS LGGTSSRRGS GDTSISIDTE ASIREIKELN ENSBTAP00000007057/1-660 DFTEKGSRSL PGLSAATLAS LGGTSSRRGS GDTSISIDTE ASIREIKELN bmy_18839T0/1-1234 DFAEKGSRGL PGLSAATLAS LGGTSSRRDS GDTSISIDTE ASIREIKELN BACU011008/1-860 DFTEKGSRGL PGLSAATLAS LGGTSSRRGS GDTSISIDTE ASIREI---- 451 500 ENSTTRP00000005848/1-804 ELKDQIQDVE GKYMQGLKEM KDSLAEVEEK YKKAMVSNAQ LDNEKTNFMY ENSP00000375857/1-808 ELKDQIQDVE GKYMQGLKEM KDSLAEVEEK YKKAMVSNAQ LDNEKTNFMY ENSBTAP00000007057/1-660 ELKDQIQDVE GKYMQGLKEM KDSLAEVEEK YKKAMVSNAQ LDNEKTNFMY bmy_18839T0/1-1234 ELKDQIQDVE GKYMQGLKEM KDSLAEVEEK YKKAMVSNAQ LDNEKTNFMY BACU011008/1-860 ---------- ---------- KDSLAEVEEK YKKAMVSNAQ LDNEKTNFMY 501 550 ENSTTRP00000005848/1-804 QVDTLKDMML ELEEQLAESR RQYEEKTKEF EREKHAHSIL QFQFAEVKEA ENSP00000375857/1-808 QVDTLKDMLL ELEEQLAESR RQYEEKNKEF EREKHAHSIL QFQFAEVKEA ENSBTAP00000007057/1-660 QVDTLKDMLL ELEEQLAESR RQYEEKSKEF EREKHAHSIL QFQFAEVKEA bmy_18839T0/1-1234 QVDMLKDMML ELEEQLAESK RQYEEKSKEF EREKHAHSIL QFQFAEVKEA BACU011008/1-860 QVDMLKDMML ELEEELAESK RQCEEKSKEF EREKHAHSIL QFQFAEVKEA 551 600 ENSTTRP00000005848/1-804 LKQREEMLE- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 LKQREEMLE- ---------- ---------- ---------- ---------- ENSBTAP00000007057/1-660 LKQREEMLEE IRQLQQKQAS YIREISDLQE TIEWKDRKIG ALERQKEFFD bmy_18839T0/1-1234 LKQREEMLEE IRQLQQKQAS YIREISDLQE TIEWKDKKIG ALERQKEFFD BACU011008/1-860 LKQREEMLE- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000005848/1-804 ---------- ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000375857/1-808 ---------- ---------- -KHGIILNSE IATNGETSDT LNNVGYQGPT ENSBTAP00000007057/1-660 SVRSERDDLR EEVVMLKEEL KKHGIILNSE IATNGETPDT LNSIASQGST bmy_18839T0/1-1234 SIRSERDDLR EEVVVLKEEL KKHGVILNSE IATNGETSDS LNNVGYQGST BACU011008/1-860 ---------- ---------- -KHGVILNSE IATNGETSDS LNNVGYQGST 651 700 ENSTTRP00000005848/1-804 XXXXXXXXXX XXXXXGTLGR ANEVEVKDEM VENEGKREIL QNTEQRQHKE ENSP00000375857/1-808 KMTKEELNAL KSTGDGTLGR ASEVEVKNEI VANVGKREIL HNTEKEQHTE ENSBTAP00000007057/1-660 KMTKEELNAL KATGDGAL-- --DIRLKKLV DEREC---LL EQIKKLKGQL bmy_18839T0/1-1234 EMTKEELNAL KATGDGTLGR ANEVEVNNEM VENEGKREIL PNTEQRQHKE BACU011008/1-860 KMTKEELNAL KATGDGTLGR ANEVEVNNEM VENEGKREIL QNTEQRPHKE 701 750 ENSTTRP00000005848/1-804 DPGEDCVDTE VLHPGDNAED QRASEDSAPS PGTLVNSGNE EQVQSQILEN ENSP00000375857/1-808 DTVKDCVDIE VFPAGENTED QKSSEDTAPF LGTLAGATYE EQVQSQILES ENSBTAP00000007057/1-660 EERQKNIRLD TLHP------ ----EDSVLQ NGT------- ---------- bmy_18839T0/1-1234 DPGEDCVDTE VLHPGDNAED QKTSEDSAPS PGTLVNSENA EQVQSQILEN BACU011008/1-860 DPGEDSVDTE VLHPGDNAED QKTSEDSAPS PGTLVNPENV EQVQSQILEN 751 800 ENSTTRP00000005848/1-804 TSFFESTQHV ESSEVINSEL DGEIPGPGIG QRGSNALDTK NQVKNLXXXX ENSP00000375857/1-808 SSLPENTVQV ESNEVMGA-- ---------- -----PDDRT RTPLEPSNCW ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 TSFFENTQQV ESSEVINSEL AGEIPGPRIG QGSSNALDVK NQSKESAEEW BACU011008/1-860 ASFFENTQQV ESSEVINSEL DGEIPGPRIG QGSSNALDVK NQSKESAEEW 801 850 ENSTTRP00000005848/1-804 XX-------- ---------- ---------- ---------- ---------- ENSP00000375857/1-808 SD-------- ---------- ---------- ---------- LDGGNHTENV ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 EKEKQEDFET NLEEISIEPR QESAPLQISE VGRESSADTG EQSGNPTEAV BACU011008/1-860 EKEKQEDFET NLEEISIEPH QESAPLQIPE VGRESSADTG EQSGNPAEAV 851 900 ENSTTRP00000005848/1-804 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000375857/1-808 GEAAVTQVEE QAGTVASCPL GHSDDTVYHD DKCMVEVPQE LETSTGHSLE ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 PEAGLTGSGE QVGTVASSPP RGIDDTVSHH EKWEVDAPEG LDPSSGHDLE BACU011008/1-860 PEAGLTGSGE QVGTVASGPP RGIDDTVSHR EKWEVDAPEG LDPSSGHDLE 901 950 ENSTTRP00000005848/1-804 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000375857/1-808 KEFTNQEAAE PKEVPAHSTE VGRDHNEEEG EETGLRDEKP IKTEVPGSPA ENSBTAP00000007057/1-660 ---------- ----DVHATD LQRDAN---- --RQISDLKF ---------- bmy_18839T0/1-1234 KELTNQEVAE PKEVPIQSTE VGGENNEEEG KGRKLRDEKP VKLEVQAIPC BACU011008/1-860 KELTNQEVAE PKEVPIQSTE VGGENNEEEG KGRKLRDEKP VKLEVQAIPC 951 1000 ENSTTRP00000005848/1-804 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000375857/1-808 GTEGNC--QE ATGPSTVDTQ NEPLDMKEPD EEKSDQQGEA LDSSQKKTKN ENSBTAP00000007057/1-660 --------KL AKSEQEITAL EQNVIRLESQ VSRYKQAAEN AEKIEDELKA bmy_18839T0/1-1234 SPEAKSSPQE VTGPSTVDAE SEPLGVKEPD EEKNDQQGEA LDSSHKKTKN BACU011008/1-860 SPEAKSSPQE VTGPSTVDAE GEPLGVKEPD EEKNDQPGEA LDSSHKKTKN 1001 1050 ENSTTRP00000005848/1-804 XXXXXXXEKS PAPVET-KD- QKELTFQNPD LSEVN-EEQV ELTDKKPVVD ENSP00000375857/1-808 KKKKNKKKKS PVPVETLKDV KKELTYQNTD LSEIKEEEQV KSTDRKSAVE ENSBTAP00000007057/1-660 EKRKLQRELR SA-----LDK TEELEVSNGH L--VKRLEKM K--------- bmy_18839T0/1-1234 KKKKNKKKKS PAPVET-KDV QKELTFQNPD LSEVK-EEQV KFTDKKPVVE BACU011008/1-860 KKKKNKKKKS PAPVET-KDV QKELTFQNPD LREVK-EEQV KFTDKKPVVE 1051 1100 ENSTTRP00000005848/1-804 AQNEVTKNPK QDAAAGSSEN ADGPENPKTE LDGGLQQDDY GVNTKTRKAV ENSP00000375857/1-808 AQNEVTENPK QKIAAESSEN VDCPENPKIK LDGKLDQEGD DVQTAAEEVL ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 AQNEVTKNPK QNTAVGSSKN ADGPENPKIE LDGGLNQDDF GVNTKTGKAV BACU011008/1-860 AQNEVTKNPK QNTAVGSSKN AYGPENPKIE LDGGLNQDDF GVNAKTGKAV 1101 1150 ENSTTRP00000005848/1-804 ADGDTLDFED NTVQSSGTSA SNKELEEGAR KDDAEEDGTA PSRPPGRDNE ENSP00000375857/1-808 ADGDTLDFED DTVQSSGPRA GGEELDEGVA KDNAKIDGAT QSSPAEPKSE ENSBTAP00000007057/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18839T0/1-1234 ADGDTLDFED NTVQSSGTSA SNKELEEGAI KDDAEEDGTA PSRPPGPDNE BACU011008/1-860 ADGDTLDFED NTVQSSGTSA SNKELEEGAI KDDSEEDSTT PSHPPGPDDE 1151 1200 ENSTTRP00000005848/1-804 EVPGSALLQH EGPSKDINDA CRTKGTGEHV TSENRGHTVR KVSDSVSLEN ENSP00000375857/1-808 DADRCTLPEH ESPSQDISDA CEAESTERCE MSEHPSQTVR KALDSNSLEN ENSBTAP00000007057/1-660 -ANRSVLLSQ Q--------- ---------- ---------- ---------- bmy_18839T0/1-1234 EVPGSTLLQD EGPSKNINDA CQTEGTEEHV TSENLGQTIR KVSDSISLEN BACU011008/1-860 EVPGSTPLQD EGPSKNISDA CQTEGTEEHV TSENVGQTIR KVSDSVSLEH 1201 1250 ENSTTRP00000005848/1-804 DDV-APAGEV GDFNSESKEE MTGGHGKGRN KEDCALS ENSP00000375857/1-808 DDLSAPGREP GHFNPESRED TRGGNEKGKS KEDCTMS ENSBTAP00000007057/1-660 ---------- ---------- ---------- ------- bmy_18839T0/1-1234 DDV-APAGEV GDFNSESKEE MTGGHGKGRN KEDCTLS BACU011008/1-860 DDV-APAGEA GDSNSESKEE MTGGHGRGRS KEDCTLS