KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:09 2014 Check: 00 .. Name: ENSP00000295890/1-333 Len: 338 Check: 6375 Weight: 1.00 Name: ENSBTAP00000007094/1-338 Len: 338 Check: 6012 Weight: 1.00 Name: ENSTTRP00000014408/1-222 Len: 338 Check: 9728 Weight: 1.00 Name: bmy_22552T0/1-300 Len: 338 Check: 7693 Weight: 1.00 Name: BACU015742/1-336 Len: 338 Check: 9058 Weight: 1.00 // 1 50 ENSP00000295890/1-333 MLCRLGGRWL RPLPALQLWA RDLPLAPVPT SGAKRPTLPV WAVAPVSAV- ENSBTAP00000007094/1-338 MLCRLSVRWL RPRPALQVRV LDPLLARAPA GGAKSSALPV WAVASVSAVG ENSTTRP00000014408/1-222 ---------- ---------- ---------- ---------- ---------- bmy_22552T0/1-300 MLCRLSVRWL QPGPALQLRG LGPPVASVPT GGAKPSALPL WAVASVSAVG BACU015742/1-336 MLCRLSVRWL QPRPALQLRG LGPPVASDPT GGAKPSALPL WAVASVSAVG 51 100 ENSP00000295890/1-333 --HANGWYEA LAASSPVRVA EEVLLGVHAA TGLPWWGSIL LSTVALRGAV ENSBTAP00000007094/1-338 LSGAGGWYEA LATSAPVQGA EDVLLFAHTA SGLPWWGSIL LTTVVLRGAV ENSTTRP00000014408/1-222 ---------- ---------- ---------- ---------- ---------- bmy_22552T0/1-300 PSGVGGWYEA LATSAPVQGA EDVLLFAHTA SGLPWWGSIL LTTVALRGAV BACU015742/1-336 PSGAGGWYES LATSAPVQGA EDVLLFAHTA SGLPWWGSIL LTTVALRGAV 101 150 ENSP00000295890/1-333 TLPLAAYQHY ILAKVENLQP EIKTIARHLN QEVAVRANQL GWSKRDARLT ENSBTAP00000007094/1-338 TLPLAAYQHY ILAKVENLQP EIKNIARHLN QEVAVRAHQL GWSKRVARLT ENSTTRP00000014408/1-222 ---------- ----VENLQP EIKSIARHLN QDVAVRANQL GWSKRAARLT bmy_22552T0/1-300 TLPLAAYQHY ILAKVENLQP EIKNIARHLN QEVAVRANQL GWSKRAARLT BACU015742/1-336 TLPLAAYQHY ILAKVENLQP EIKNIARHLN QEVAVRANQL GWSKRAARLT 151 200 ENSP00000295890/1-333 YLKNMRRLIS ELYVRDNCHP FKATVLVWIQ LPMWIFMSFA LRNLSTGAAH ENSBTAP00000007094/1-338 YLKTMRRLVS ELYVRDNCHP FKATVLVWIQ LPMWIFMSVA LRNFSTGAAH ENSTTRP00000014408/1-222 YLKTMRRLVS ELYVRDNCHP FKATVLVWIQ LPMWIFVSVA LRNFSTGATH bmy_22552T0/1-300 YLKTMRRLVS ELYVRDNCHP FKATVLVWIQ LPMWIFMSVA LRNFSTGATH BACU015742/1-336 YLKTMRRLVS ELYVRDNCHP FKATVLVWIQ LPMWIFMSVA LRNFSTGATH 201 250 ENSP00000295890/1-333 SE-GFSVQEQ LATGGILWFP DLTAPDSTWI LPISVGVINL LIVEICALQK ENSBTAP00000007094/1-338 SEAGFSVQEQ LTAGGVLWFH DLTALDSTWI LPVSVGVINL LIVEIFALQK ENSTTRP00000014408/1-222 SE-GFSVQEQ LATGGVLWFP DLTALDSTWI LPVSIGVINL LIVEIFALQK bmy_22552T0/1-300 SE-GFSVQEQ LATGGVLWFP DLTALDSTWI LPVSIGVINL LIVE------ BACU015742/1-336 SE-GFSVQEQ LATGGVLWFP DLTALDSTWI LPVSIGVINL LIVEIFALQK 251 300 ENSP00000295890/1-333 IGMSRFQTYI TYFVRAMSVL MIPIAATVPS SIVLYWLCSS FVGLSQNLLL ENSBTAP00000007094/1-338 LGKSRFQTYI THFVRAVSVL MIPVAATVPS SIVLYWLCSS FMGLSQNLLL ENSTTRP00000014408/1-222 VGMSRFQTYI TYFVRALSVL MIPIAATVPS SIVLYWLCSS LMGLSQNLLL bmy_22552T0/1-300 ---------- ---------- ---------- SLVLYWLCSS LMGLAQNLLL BACU015742/1-336 IGMSRFQTYI TYFVRAVSVL MIPIAATVPS SLVLYWLCSS FMGLAQNLLL 301 350 ENSP00000295890/1-333 RSPGFRQLCR IPSTKSDSET PYKDIFAAFN TKFISRK- ENSBTAP00000007094/1-338 RSPGFRQLCR IPLTKLDSDT PYKDLLAAFH SKFISRKS ENSTTRP00000014408/1-222 RSPRFRQLCR IPLTKSDSDT PYKDLFAAFY AKFISRK- bmy_22552T0/1-300 RSPRFXQLCR IPLTKSDSDT PYKDLFAAFY AKFISRK- BACU015742/1-336 RSPRFRQLCR IPLTKSDSDT PYKDLFAAFY AKFISRK-