KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:31:10 2014  Check: 00 ..

 Name: ENSBTAP00000007126/1-160  Len:    165  Check:  7367  Weight:  1.00
 Name: ENSP00000286175/1-165     Len:    165  Check:  4617  Weight:  1.00
 Name: ENSTTRP00000011180/1-129  Len:    165  Check:  3281  Weight:  1.00
 Name: bmy_20059T0/1-161         Len:    165  Check:  7811  Weight:  1.00
 Name: BACU019855/1-130          Len:    165  Check:  6595  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000007126/1-160  -SVTLHTDVG DIKIEVFCEK GKKESQ---N FLALCASNYY NGCIFHRNIK 
ENSP00000286175/1-165     MSVTLHTDVG DIKIEVFCER TPKTCEMESR CVPQAGVQWR DLGSLQPPPP 
ENSTTRP00000011180/1-129  MSVTLHTDVG DIKIEVFCER TPKTCE---- ---------- ---------- 
bmy_20059T0/1-161         MSVTLHTDVG DIKIEVFCER TPRTCE---N FLALCASNYY NGCIFHRNIK 
BACU019855/1-130          -SVTLHTDVG DIKIEVFCER TPRTCE---- ---------- ---------- 


                          51                                                 100
ENSBTAP00000007126/1-160  GF-MVQTGDP TGTGRGGNSI WGKKFEDEYS EYLKHSVRGV VSMANNGPNT 
ENSP00000286175/1-165     GFKQVFCLSL PRTGRGGNSI WGKKFEDEYS EYLKHNVRGV VSMANNGPNT 
ENSTTRP00000011180/1-129  ---------- --TGRGGSSI WGKKFEDEYS EYLKHNVRGV VSMANNGPNT 
bmy_20059T0/1-161         GF-MVQTGDP TGTGRGGSSI WGKKFEDEYS EYLKHSVRGV VSMANNGPNT 
BACU019855/1-130          ---------- VSTGRGGSSI WGKKFEDEYS EYLKHSVRGV VSMANNGPNT 


                          101                                                150
ENSBTAP00000007126/1-160  NGSQFFITYG KQPHLDMKYT VFGKVIDGLE TLDELEKLPV NEKTYRPLND 
ENSP00000286175/1-165     NGSQFFITYG KQPHLDMKYT VFGKVIDGLE TLDELEKLPV NEKTYRPLND 
ENSTTRP00000011180/1-129  NGSQFFITYG KQPHLDMKYT VFGKVIDGLE TLDELEKLPV NEKTYRPLND 
bmy_20059T0/1-161         NGSQFFITYG KQPHLDMKYT VFGKVIDGLE TLDELEKLPV NEKTYRPLND 
BACU019855/1-130          NGSQFFITYG KQPHLDMKYT VFGKVIDGLE TLDELEKLPV NEKTYRPLND 


                          151                                                200
ENSBTAP00000007126/1-160  VHIKDITIHA NPFAQ 
ENSP00000286175/1-165     VHIKDITIHA NPFAQ 
ENSTTRP00000011180/1-129  VHIKDITIHA NPFAQ 
bmy_20059T0/1-161         VHIKDITIHA NPFAQ 
BACU019855/1-130          VHIKDITIHA NPFAQ