KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:11 2014 Check: 00 .. Name: BACU005618/1-261 Len: 585 Check: 3259 Weight: 1.00 Name: ENSTTRP00000013153/1-511 Len: 585 Check: 6252 Weight: 1.00 Name: bmy_03613T0/1-406 Len: 585 Check: 5822 Weight: 1.00 Name: ENSP00000265969/1-585 Len: 585 Check: 3547 Weight: 1.00 Name: ENSBTAP00000007132/1-585 Len: 585 Check: 4469 Weight: 1.00 // 1 50 BACU005618/1-261 MGQGDESERI VINVGGTRHQ TYRSTLRTLP GTRLAWLAEP DAHSHFDYDP ENSTTRP00000013153/1-511 MGQGDESERI VINVGGTRHQ TYRSTLRTLP GTRLAWLAEP DAHSHFDYDP bmy_03613T0/1-406 ---------- ---------- ---------- ---------- ---------- ENSP00000265969/1-585 MGQGDESERI VINVGGTRHQ TYRSTLRTLP GTRLAWLAEP DAHSHFDYDP ENSBTAP00000007132/1-585 MGQGDESERI VINVGGTRHQ TYRSTLRTLP GTRLAWLAEP DAHSHFDYDP 51 100 BACU005618/1-261 RADEFFFDRH PGVFAHILNY YRTGKLHCPA DVCGPLYEEE LAFWGIDETD ENSTTRP00000013153/1-511 RADEFFFDRH PGVFAHILNY YRTGKLHCPA DVCGPLYEEE LAFWGIDETD bmy_03613T0/1-406 ---------- ---------- ---------- ---------- ---------- ENSP00000265969/1-585 RADEFFFDRH PGVFAHILNY YRTGKLHCPA DVCGPLYEEE LAFWGIDETD ENSBTAP00000007132/1-585 RADEFFFDRH PGVFAHILNY YRTGKLHCPA DVCGPLYEEE LAFWGIDETD 101 150 BACU005618/1-261 VEPCCWMTYR QHRDAEEALD SFGGAPLDNS ADDADADGPG DSGDGEDELE ENSTTRP00000013153/1-511 VEPCCWMTYR QHRDAEEALD SFGGAPLDNS ADDADADGPG DSGDGEDELE bmy_03613T0/1-406 --MTSWAP-- ---------- --GGEPLARG T--------- ---------- ENSP00000265969/1-585 VEPCCWMTYR QHRDAEEALD SFGGAPLDNS ADDADADGPG DSGDGEDELE ENSBTAP00000007132/1-585 VEPCCWMTYR QHRDAEEALD SFGGAPLDNS ADDADADGPG DSGDGEDELE 151 200 BACU005618/1-261 MTKRLALSDS PDGRPGGFWR RWQPRIWALF EDPYSSRYAR INGLDK---- ENSTTRP00000013153/1-511 MTKRLALSDS PDGRPGGFWR RWQPRIWALF EDPYSSRYAR YVAFASLFFI bmy_03613T0/1-406 LAREVLVFQG P--------- ---------- ------RLEA YVAFASLFFI ENSP00000265969/1-585 MTKRLALSDS PDGRPGGFWR RWQPRIWALF EDPYSSRYAR YVAFASLFFI ENSBTAP00000007132/1-585 MTKRLALSDS PDGRPGGFWR RWQPRIWALF EDPYSSRYAR YVAFASLFFI 201 250 BACU005618/1-261 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013153/1-511 LVSITTFCLE THERFNPIVN KTEIENVRNG TQVRYYREAE TEAFLTYIEG bmy_03613T0/1-406 LVSITTFCLE THERFNPIVN KTEIENVRNG TQVRYYREAE TEAFLTYIEG ENSP00000265969/1-585 LVSITTFCLE THERFNPIVN KTEIENVRNG TQVRYYREAE TEAFLTYIEG ENSBTAP00000007132/1-585 LVSITTFCLE THERFNPIVN KTEIENVRNG TQVRYYREAE TEAFLTYIEG 251 300 BACU005618/1-261 ----W----- ---------- ---------- ---------- ---GLVGVQN ENSTTRP00000013153/1-511 VCVVWFTFEF LMRVVFCPNK VEFIKNSLNI IDFVAILPFY LEVGLSGLSS bmy_03613T0/1-406 VCVVWFTFEF LMRVVFCPNK VEFIKNSLNI IDFVAILPFY LEVGLSGLSS ENSP00000265969/1-585 VCVVWFTFEF LMRVIFCPNK VEFIKNSLNI IDFVAILPFY LEVGLSGLSS ENSBTAP00000007132/1-585 VCVVWFTFEF LMRVVFCPNK VEFIKNSLNI IDFVAILPFY LEVGLSGLSS 301 350 BACU005618/1-261 LTEKSWLS-- ---------- ---------- --------PV STEEQIL--- ENSTTRP00000013153/1-511 KAAKDVLGFL RVVRFVXXXX XXXXXXXXXX XXXXXXXXXX XXNEFLLLII bmy_03613T0/1-406 KAAKDVLGFL RVVRFVRILR IFKLTRHFVG LRVLGHTLRA STNEFLLLII ENSP00000265969/1-585 KAAKDVLGFL RVVRFVRILR IFKLTRHFVG LRVLGHTLRA STNEFLLLII ENSBTAP00000007132/1-585 KAAKDVLGFL RVVRFVRILR IFKLTRHFVG LRVLGHTLRA STNEFLLLII 351 400 BACU005618/1-261 ---------- -----GEKLG VGGNERD--- ---------G RW----NFRL ENSTTRP00000013153/1-511 FLALGVLIFA TMIYYAERIG AQPNDPSASE HTHFKNIPIG FWWAVVTMTT bmy_03613T0/1-406 FLALGVLIFA TMIYYAERIG AQPNDPSASE HTHFKNIPIG FWWAVVTMTT ENSP00000265969/1-585 FLALGVLIFA TMIYYAERIG AQPNDPSASE HTHFKNIPIG FWWAVVTMTT ENSBTAP00000007132/1-585 FLALGVLIFA TMIYYAERIG AQPNDPSASE HTHFKNIPIG FWWAVVTMTT 401 450 BACU005618/1-261 RGEGKGGPLT SGS------- ---------- ---------- ---------- ENSTTRP00000013153/1-511 LGYGDMYPQT WSGMLVGALC ALAGVLTIAM PVPVIVNNFG MYYSLAMAKQ bmy_03613T0/1-406 LGYGDMYPQT WSGMLVGALC ALAGVLTIAM PVPVIVNNFG MYYSLAMAKQ ENSP00000265969/1-585 LGYGDMYPQT WSGMLVGALC ALAGVLTIAM PVPVIVNNFG MYYSLAMAKQ ENSBTAP00000007132/1-585 LGYGDMYPQT WSGMLVGALC ALAGVLTIAM PVPVIVNNFG MYYSLAMAKQ 451 500 BACU005618/1-261 ---------- DREPSPGT-- ---------- ---------- ---------- ENSTTRP00000013153/1-511 KLPKKKKKHI PRPPQLGSPN YCKSVVNSPH HSTQSDTCPL AQEEILEINR bmy_03613T0/1-406 KLPKKKKKHI PRPPQLGSPN YCKSVVNSPH HSTQSDTCPL AQEEILEINR ENSP00000265969/1-585 KLPKKKKKHI PRPPQLGSPN YCKSVVNSPH HSTQSDTCPL AQEEILEINR ENSBTAP00000007132/1-585 KLPKKKKKHI PRPPQLGSPN YCKSVVNSPH HSTQSDTCPL AQEEILEINR 501 550 BACU005618/1-261 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013153/1-511 AGRK------ ---------- -------PLR GMSI------ ---------- bmy_03613T0/1-406 ADSKLNGEVA KAALANEDCP HIDQALTPDE GLPFTRSGTR ERYGPCFLLS ENSP00000265969/1-585 ADSKLNGEVA KAALANEDCP HIDQALTPDE GLPFTRSGTR ERYGPCFLLS ENSBTAP00000007132/1-585 ADSKLNGEVA KAALANEDCP HIDQALTPDE GLPFTRSGTR ERYGPCFLLS 551 600 BACU005618/1-261 ---------- ---------- ---------- ----- ENSTTRP00000013153/1-511 ---------- ---------- ---------- ----- bmy_03613T0/1-406 TGEYACPPGG GVRKGM---- ---------- ----- ENSP00000265969/1-585 TGEYACPPGG GMRKDLCKES PVIAKYMPTE AVRVT ENSBTAP00000007132/1-585 TGEYACPPGG GVRKDLCKES PVIAKYMPTE AVRVT