KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:11 2014 Check: 00 .. Name: ENSTTRP00000011331/1-442 Len: 442 Check: 4626 Weight: 1.00 Name: ENSP00000334458/1-442 Len: 442 Check: 1300 Weight: 1.00 Name: ENSBTAP00000007134/1-442 Len: 442 Check: 1275 Weight: 1.00 Name: bmy_17303T0/1-229 Len: 442 Check: 8609 Weight: 1.00 Name: BACU015246/1-259 Len: 442 Check: 6867 Weight: 1.00 // 1 50 ENSTTRP00000011331/1-442 MYQSLAMAAN HGPPPGPYEA GGPGAFMHGA GAASSPVYVP TPRVPSSVLG ENSP00000334458/1-442 MYQSLAMAAN HGPPPGAYEA GGPGAFMHGA GAASSPVYVP TPRVPSSVLG ENSBTAP00000007134/1-442 MYQSLAMAAN HGPPPGPYEA GGPGAFMHGA GAASSPVYVP TPRVPSSVLG bmy_17303T0/1-229 ---------- ---------- ---------- ---------- ---------- BACU015246/1-259 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011331/1-442 LSYLQGGGGG TVSGATSGGS SGAAPSGAGP GTQQGSPGWS QAGAEGAAYT ENSP00000334458/1-442 LSYLQGGGAG SASGGASGGS SGGAASGAGP GTQQGSPGWS QAGADGAAYT ENSBTAP00000007134/1-442 LSYLQGGGGG AASGAASGGS SGAAPSGAGP GTQQGSPGWS QAGAEGAAYT bmy_17303T0/1-229 ---------- ---------- ---------- ---------- ---------- BACU015246/1-259 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011331/1-442 PPPVSPRFSF PGTTGSLAAA AAAAAAREAA AYSSGGGAAG AGLAGREQYG ENSP00000334458/1-442 PPPVSPRFSF PGTTGSLAAA AAAAAAREAA AYSSGGGAAG AGLAGREQYG ENSBTAP00000007134/1-442 PPPVSPRFSF PGTTGSLAAA AAAAAAREAA AYSSGSGAAG AGLAGREQYG bmy_17303T0/1-229 ---------- ---------- ---------- ---------- ---------- BACU015246/1-259 ---------- ---MTEMAMS EKSQLLNSID MEDKGDGEGG A--------- 151 200 ENSTTRP00000011331/1-442 RAGFAGSYSS PYPAYMADVG ASWAAAAAAS AGPFDSPVLH SLPGRANPAT ENSP00000334458/1-442 RAGFAGSYSS PYPAYMADVG ASWAAAAAAS AGPFDSPVLH SLPGRANPAA ENSBTAP00000007134/1-442 RAGFAGSYSS PYPAYMADVG ASWAAAAAAS AGPFDSPVLH SLPGRANPAA bmy_17303T0/1-229 ---------- ---------- ---------- ---------- ---------- BACU015246/1-259 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000011331/1-442 RHPNLDMFDD FSEGRECVNC GAMSTPLWRR DGTGHYLCNA CGLYHKMNGI ENSP00000334458/1-442 RHPNLDMFDD FSEGRECVNC GAMSTPLWRR DGTGHYLCNA CGLYHKMNGI ENSBTAP00000007134/1-442 RHPNLDMFDD FSEGRECVNC GAMSTPLWRR DGTGHYLCNA CGLYHKMNGI bmy_17303T0/1-229 ------MFDD FSEGRECVNC GAMSTPLWRR DGTGHYLCNA CGLYHKMNGI BACU015246/1-259 ----LDMFDD FSEGRECVNC GAMSTPLWRR DGTGHYLCNA CGLYHKMNGI 251 300 ENSTTRP00000011331/1-442 NRPLIKPQRR LSASRRVGLS CANCQTTTTT LWRRNAEGEP VCNACGLYMK ENSP00000334458/1-442 NRPLIKPQRR LSASRRVGLS CANCQTTTTT LWRRNAEGEP VCNACGLYMK ENSBTAP00000007134/1-442 NRPLIKPQRR LSASRRVGLS CANCQTTTTT LWRRNAEGEP VCNACGLYMK bmy_17303T0/1-229 NRPLIKPQRR LSASRRVGLS CANCQTTTTT LWRRNAEGEP VCNACGLYMK BACU015246/1-259 NRPLIKPQRR LSASRRVGLS CANCQTTTTT LWRRNAEGEP VCNACGLYMK 301 350 ENSTTRP00000011331/1-442 LHGVPRPLAM RKEGIQTRKR KPKNLNKSKT PAXXXXXXXX XXXXXXXXXX ENSP00000334458/1-442 LHGVPRPLAM RKEGIQTRKR KPKNLNKSKT PAAPSGSESL PPASGASSNS ENSBTAP00000007134/1-442 LHGVPRPLAM RKEGIQTRKR KPKNLNKSKT PAGPSGSESL PPATSASSSS bmy_17303T0/1-229 LHGVPRPLAM RKEGIQTRKR KPKNLNKSKT PAGPSGSESL PPTTSASS-- BACU015246/1-259 LHGVPRPLAM RKEGIQTRKR KPKNLNKSKT PAGPSGSESL PPTTSASS-- 351 400 ENSTTRP00000011331/1-442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTFSVSAMS GHGSSIHPVL ENSP00000334458/1-442 SNATTSSSEE MRPIKTEPGL SSHYGHSSSV SQTFSVSAMS GHGPSIHPVL ENSBTAP00000007134/1-442 SSVATSSSEE MRPIKTEPGL SSHYGPSSSL SQTFSVSAMS GHGSSIHPVL bmy_17303T0/1-229 -----SSAEE MRPIKTEPGL SSHYGHGSSL SQTFSVSAMS GHGSSIHPVL BACU015246/1-259 -----SSAEE MRPIKTEPGL SSHYGHGSSL SQTFSVSAMS GHGSSIHPVL 401 450 ENSTTRP00000011331/1-442 SALKLSPQGY ASSVNQSPQA SSKQDPWNSL ALADSHGDII TA ENSP00000334458/1-442 SALKLSPQGY ASPVSQSPQT SSKQDSWNSL VLADSHGDII TA ENSBTAP00000007134/1-442 SALKLSPQGY ASSVSQSPQA SSKQDPWNSL ALADSHGDII TA bmy_17303T0/1-229 SALKLSPQGY ASSVSQSPQA SSKQDPWNSL ALADSHGDII TA BACU015246/1-259 SALKLSPQGY ASSVSQSPQA SSKQDPWNSL ALADSHGDII TA