KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:16 2014 Check: 00 .. Name: ENSBTAP00000007169/1-793 Len: 847 Check: 5550 Weight: 1.00 Name: bmy_17488T0/1-749 Len: 847 Check: 3498 Weight: 1.00 Name: BACU012044/1-803 Len: 847 Check: 8359 Weight: 1.00 Name: ENSTTRP00000014073/1-801 Len: 847 Check: 5639 Weight: 1.00 // 1 50 ENSBTAP00000007169/1-793 MAKRSSLSIR IVEGKNLPAK -DITGSSDPY CIVKVDNEPI IRTATVWKTL bmy_17488T0/1-749 MAKRSSLFIR IVEGKNLPAK -DITGSSDPY CIVKVDNEPI IRTATVWKTL BACU012044/1-803 MSSSSSRPPG SDEARFSRCH GNGTGSSDPY CIVKVDNEPI IRTATVWKTL ENSTTRP00000014073/1-801 MAKRSSLFIR IVEGKNLPAK -DITGSSDPY CIVKVDHEPI IRTATVWKTL 51 100 ENSBTAP00000007169/1-793 CPFWGEEYEV HLPPTFHSVA FYVMDEDALS RDDVIGKVCL TRDTLAAHPK bmy_17488T0/1-749 CPFWGEEYQV HLLPTFHSVA FYVMDEDALS RDDIIGKVCL TRDTLATHPK BACU012044/1-803 CPFWGEEYQV HLPPTFHSVA FYVMDEDALS RDDVIGKVCL TRDTLATQPK ENSTTRP00000014073/1-801 CPFWGEEYQV HLLPTFHSVA FYVMDEDALS RDDVIGKVCL TRDTLATHPK 101 150 ENSBTAP00000007169/1-793 GFSGWAHLTE VDPDEEVQGE IHLRLEVVPG TRACRLRCSV LEARDLAPKD bmy_17488T0/1-749 GFSGWAHLTE VDPDEEVQGE IHLRLEVVRG TRACRLRCSV LEARDLAPKD BACU012044/1-803 GFSGWAHLTE VDPDEEVQGE IHLRLEVVPG TRACRLRCSV LEARDLAPKD ENSTTRP00000014073/1-801 GFSGWAHLTE VDPDEEVQGE IHLRLEVVLG TRACRLRCSV LEARDLAPKD 151 200 ENSBTAP00000007169/1-793 RNGASDPFVR VRYNGRTQET SIVKKSCYPR WNETFEFELE EGAAEVLCVE bmy_17488T0/1-749 RNGASDPFVR VRYNGRTQET SIVKKSRYPR WNETFEFELE EGAAEALCVE BACU012044/1-803 RNGASDPFVR VRYNGRTQET SIVKKSRYPR WNETFEFELE EGAAEALCVE ENSTTRP00000014073/1-801 RNGASDPFVR VRYNGRTQET SIVKKSRYPR WNETFEFELE EGAAEALCVE 201 250 ENSBTAP00000007169/1-793 AWDWDLVSRN DFLGKVVVNV QRLWAAQREE GWFRLQPDQS KSRREEKGHL bmy_17488T0/1-749 AWDWDLVSRN DFLGKVVFNV QRLQAAQQEE GWFQLQPDQS KSQREE-GNL BACU012044/1-803 AWDWDLVSRN DFLGKVVFNV QRLRAAQQEE GWFQLQPDQS KSQREE-GNL ENSTTRP00000014073/1-801 AWDWDLVSRN DFLGKVVFNV QRLRAAQQEE GWFRLQPDQS KSRREE-GNL 251 300 ENSBTAP00000007169/1-793 GSLQLEVRLR DETVLPSSCY QPLVQLLCRE VKPGTQGPGQ LISLIEETTS bmy_17488T0/1-749 GSLQLEVRLR DEMVLPSGCY QPLVQLLCRE VKLGTQSPGQ LILLIEETTS BACU012044/1-803 GSLQLEVRLR DEMVLPSGCY QPLVQLLCRE VKLGTQSPGQ LILLIEETTS ENSTTRP00000014073/1-801 GSLQLEVRLR DEMVLPSGCY QPLVQLLCHE VKLGTQSPGQ LILLIEETTS 301 350 ENSBTAP00000007169/1-793 TECRQEVATT LLKLFLGQGL AKDFLDLLFQ LELSRTSEAN TLFRSNSLAS bmy_17488T0/1-749 TECRQDVATT LLKLFLGQGL AKDFLDLLFQ LELGRTNARG GWEASCEEDG BACU012044/1-803 TECRQDVATT LLKLFLGQGL AKDFLDLLFQ LELGRTSEAN TLFRSNSLAS ENSTTRP00000014073/1-801 TECRQDVATT LLKLFLGQGL AKDFLDLLFQ LELGRTSEAN TLFRSNSLAS 351 400 ENSBTAP00000007169/1-793 KSMESFL--- ------NVAG MRYLHGVLGP IIDRVFEEKK YVELDPSKVE bmy_17488T0/1-749 GQLEVGVGTN AARGGPQVAG MRYLHGVLGP IVDRVFEEKK YVELDPSKVE BACU012044/1-803 KSMESFL--- ------KVAG MRYLHGVLGP IIDRVFEEKK YVELDPSKVE ENSTTRP00000014073/1-801 KSMESFL--- ------KVAG MRYLHGVLGP IIDRVFEEKK YVELDPSKVE 401 450 ENSBTAP00000007169/1-793 VKDVGCSGLH RPQTEAEVLE QSVQTLCAHL GALLSALSRS VRACPAVVRA bmy_17488T0/1-749 VKDVGCSGLH RPQTEAEVLE QSAQTLRAHL GALLSSLSRS VRACPAVVRA BACU012044/1-803 VKDVGCSGLH RPQTEAEVLE QSAQTLRAHL GALLSSLSRS VRACPAVVRA ENSTTRP00000014073/1-801 VKDVGCSGLH RPQTEAEVLE QSAQTLRAHL GALLSSLSRS VRACPAVVRA 451 500 ENSBTAP00000007169/1-793 TFRQLFRRVR ERFPSAQDE- ---------- ---------- ----NVPFIA bmy_17488T0/1-749 TFRQLFRRVR ERFPSAQDEV RPVPVGLGGG EKVGGKEVVE PQDVNVPFIA BACU012044/1-803 TFRQLFRRVR ERFPSAQDE- ---------- ---------- ----NVPFIA ENSTTRP00000014073/1-801 TFRQLFRRVR ERFPSAQDE- ---------- ---------- ----NVPFIA 501 550 ENSBTAP00000007169/1-793 VTSFLCLRFV SPAILAPKLF HLRERHADAR TSRTLLLLAK ---------A bmy_17488T0/1-749 VTSFLCLRFI SPAIMAPKLF HLRERHADAR TSRTLLLLAK VRDFGHWREA BACU012044/1-803 VTSFLCLRFI SPAIMAPKLF HLRERHADAR TSRTLLLLAK ---------A ENSTTRP00000014073/1-801 VTSFLCLRFI SPAIMAPKLF HLRERHADAR TSRTLLLLAK ---------A 551 600 ENSBTAP00000007169/1-793 VQNVGNMDTP ASRAKEAWME PLQPTVRQGV AQLKDFITKL VDIQEKDELD bmy_17488T0/1-749 VQNVGNMDTP ASRAKEAWME PLQPTVRQGV AQLKDFITKL VDIQEKEELD BACU012044/1-803 VQNVGNMDTP ASRAKEAWME PLQPTVRQGV AQLKDFITKL VDIQEKEELD ENSTTRP00000014073/1-801 VQNVGNMDTP ASRAKEAWME PLQPTVRQGV AQLKDFITKL VDIQEKEELD 601 650 ENSBTAP00000007169/1-793 LQRALSLQAP PVKEGPLFIH RTKGKGPLTS SSFKKLHFSL TTEALSFAKT bmy_17488T0/1-749 LQRALSLQAP PVKEGPLFIH RTKGKGPLMS SSFKKLHFSL TTEALSFAKT BACU012044/1-803 LQRALSLQAP PVKEGPLFIH RTKGKGPLMS SSFKKLHFSL TTEALSFAKT ENSTTRP00000014073/1-801 LQRALSLQAP LVKEGPLFIH RTKGKGPLMS SSFKKLHFSL TTEALSFAKT 651 700 ENSBTAP00000007169/1-793 PSSKKSTLIK LANIRAAEKV EEKSFSSSHV MQVIYTDDAG KLQTAYLQCK bmy_17488T0/1-749 PSSKKSTLIK LAHIRAAEKV EEKSFGSSHV MQVIYTDDAG RSQTAYLQCK BACU012044/1-803 PSSKKSTLIK LAHIRAAEKV EEKSFGSSHV MQVIYTDDAG RSQTAYLQCK ENSTTRP00000014073/1-801 PSSKKSTLIK LAHIRAAEKV EEKSFGSSHV MQVIYTDDAG RSQTAYLQCK 701 750 ENSBTAP00000007169/1-793 SVNELNQWLS ALRKVCINNT GLLGSYHPGI FRGDKWSCCH QRDKTDLGCN bmy_17488T0/1-749 CVNELNQWLS ALRKVSINNT GLLGSYHPGV FRGDKWSCCH QRDKTGRSTD BACU012044/1-803 CVNELNQWLS ALRKVSINNT GLLGSYHPGV FRGDKWSCCH QRDKTDLGCD ENSTTRP00000014073/1-801 CVNELNQWLS ALRKVSINNT GLLGSYHPGV FRGDKWSCCH QRDKTDLGCD 751 800 ENSBTAP00000007169/1-793 KTRSWVTLQE WNDPLDHDLE AQLIYRHLLG VEAALREKHR QLSTGPEAGR bmy_17488T0/1-749 S--------- ---------- ---------- ---------- ---------- BACU012044/1-803 KTRSRVTLQE WNDPLDHDLE AQLIYRHLLG VEATLREKHR QLSAGPEAGP ENSTTRP00000014073/1-801 KTRSRVTLQE WNDPLDHDLE AQLIYR-LLG VETTLREKHR QLSAGPEAGP 801 850 ENSBTAP00000007169/1-793 GPTGPGEAPR DPLAELLQVL GDLQEAHRSS PAGSPPS--- ------- bmy_17488T0/1-749 ---------- ---------- ---------- ---------- ------- BACU012044/1-803 VLPGPGGAPE DPLAQLLQVL QDLREAHRSS PAGSPPLEPS RVLELQT ENSTTRP00000014073/1-801 VLTGPGGAPE DPVAQLLQVL QDLREAHRSS PAGSPPLEPS HVLELQT