KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:24 2014 Check: 00 .. Name: ENSBTAP00000007206/1-501 Len: 523 Check: 1035 Weight: 1.00 Name: ENSP00000348425/1-499 Len: 523 Check: 8429 Weight: 1.00 Name: bmy_17992T0/1-395 Len: 523 Check: 3284 Weight: 1.00 Name: ENSTTRP00000004882/1-500 Len: 523 Check: 771 Weight: 1.00 Name: BACU001010/1-462 Len: 523 Check: 3535 Weight: 1.00 // 1 50 ENSBTAP00000007206/1-501 ------MENP LCVSI----- -FLFYCILIQ SSA-HGQSL- --------GP ENSP00000348425/1-499 -----MDTSP LCFSI----- -LLVLCIFIQ SSA-LGQSL- --------KP bmy_17992T0/1-395 MAILLEIKRS LGFPKATAHA YLQHLAVTPL PSALRNFWVV PELAEVEQVP ENSTTRP00000004882/1-500 ------MENS LCVSI----- -FLVLCIFIQ SSA-HGQSL- --------GL BACU001010/1-462 ---------M IWVPK----- -YGPLGASSH PCP-KGTWK- -------DFA 51 100 ENSBTAP00000007206/1-501 ESFGRRSRAA ETNKTPQETR TKFLLFRGET DKGCQILLNH SDTLQQCGFN ENSP00000348425/1-499 EPFGRRAQAV ETNKTLHEMK TRFLLF-GET NQGCQIRINH PDTLQECGFN bmy_17992T0/1-395 ESFGRRSRAV ETKETSQETR TRFLLFKEET DKGCQIRLNH SDTLQQCGFN ENSTTRP00000004882/1-500 ESFGRRSRAA ETKETSQETR TRFLLFKEET NKGCQIRLNH SDTLQQCGFN BACU001010/1-462 ESFGRRSRAI ETKETSQETR TRFLLFKEET DKGCQIRLNH SDTLQQCGFN 101 150 ENSBTAP00000007206/1-501 SSLPLVMIVH GWLVDDILED WVWEMVAALK SQLAQSVNVG LAEWVTLAHN ENSP00000348425/1-499 SSLPLVMIIH GWSVDGVLEN WIWQMVAALK SQPAQPVNVG LVDWITLAHD bmy_17992T0/1-395 SSLPLVMIVH GWLMEASLEN WIWQMVAALK SQLAQPVNVG LAEWVTLAHT ENSTTRP00000004882/1-500 SSLPLVMIVH GWLMEASLEN WIWQMVAALK SQVARPVNVG LAEWVTLAHT BACU001010/1-462 SSLPLVMIVH GWLMEASLEN WIWQMVAALK SQLAQPVNVG LAEWVTLAHT 151 200 ENSBTAP00000007206/1-501 HYTTAVRNTR LVGQEIAALL QWLQESVQFS PSHVHLIGYS LGAHVSGFAG ENSP00000348425/1-499 HYTIAVRNTR LVGKEVAALL RWLEESVQLS RSHVHLIGYS LGAHVSGFAG bmy_17992T0/1-395 HYSIAVRNTR LVGQEIAALL QWLEESVHFS PSNVHLIGYS LGAHVSGFAG ENSTTRP00000004882/1-500 HYSIAVRNTR LVGQEIAALL QWLEESVHFS PSNVHLIGYS LGAHVSGFAG BACU001010/1-462 HYSIAVRNTR LVGQEIAALL QWLEESVHFS PSNVHLIGYS LGAHVSGFAG 201 250 ENSBTAP00000007206/1-501 SYMSRKHKIG RITVIDCCSP RSSRAQFSDG LIPQQAGFLS TLMSFHWNVP ENSP00000348425/1-499 SSIGGTHKIG RITGLDAAGP LFEGSAPSNR LSPDDANFVD AIHTFTREHM bmy_17992T0/1-395 TYMSGKHKIG RITGLDAAGL LFKRASPNDR LSPDDANFVD AIHTFTQEHM ENSTTRP00000004882/1-500 SYMSRKHKIG RITGLDAAGL LFKRASPSDR LSPDDANFVD AIHTFTQEHM BACU001010/1-462 SYMSGKHKIG RITGLDAAGL LFKRASPNDR LSPDDANFVD AIHTFTQEHM 251 300 ENSBTAP00000007206/1-501 GLSVKGLTGL LWPPKFHPND GTKLPGVHFH TLLRKEAFQG LPSITRTVKC ENSP00000348425/1-499 GLSV-GIKQP IGHYDFYPNG GSFQPGCHFL ELYRHIAQHG FNAITQTIKC bmy_17992T0/1-395 GLSV-GIKQP IAHYDFYPNG GSYQPGCHFL ELYKHIAKHG LNAITQTIKC ENSTTRP00000004882/1-500 GLSV-GIKQP IAHYDFYPNG GSYQPGCHFL ELYKHIAKHG LNAITQTIKC BACU001010/1-462 GLSV-GIKQP IAHYDFYPNG GSYQPGCHFL ELYKHIAKHG LNAITQTIKC 301 350 ENSBTAP00000007206/1-501 AHERSVHLFI DSLLHADMQS MAYLCRDMDR FSQGLCLSCK KGRCNTLGYH ENSP00000348425/1-499 SHERSVHLFI DSLLHAGTQS MAYPCGDMNS FSQGLCLSCK KGRCNTLGYH bmy_17992T0/1-395 AHERSVHLFI DSLLHADMQS TAYPCKDMDS FSQGLCLSCK KGRCNTLGYY ENSTTRP00000004882/1-500 AHERSVHLFI DSLLHADMQS TAYPCRDMDS FSQGLCLSCK KGRCNTLGYY BACU001010/1-462 AHERSVHLFI DSLLHADMQS TAYPCKDMDS FSQGLCLSCK KGRCNTLGYY 351 400 ENSBTAP00000007206/1-501 TRQERQSKKS KSLFLVTRAQ SPFKVYHYQF KIRFINQTEN PVEPTFTVSF ENSP00000348425/1-499 VRQEPRS-KS KRLFLVTRAQ SPFKVYHYQF KIQFINQTET PIQTTFTMSL bmy_17992T0/1-395 ARQEQQSKKS KSLFLVTRAQ SPFK------ ---------- ---------- ENSTTRP00000004882/1-500 ARQEPQSKKS KSLFLVTRAQ SPFKVYHYQL KIQFSNEIEK PAEPTFAMSL BACU001010/1-462 ARQEQQSKKS KSLFLVTQAQ SPFKVYHYQL KIQFINQIEK PIEPTFAMSL 401 450 ENSBTAP00000007206/1-501 LGTRGERQKI PITLSKGITS NETYSFLITL DVDIGELIMI KFKWENRMVW ENSP00000348425/1-499 LGTKEKMQKI PITLGKGIAS NKTYSFLITL DVDIGELIMI KFKWENSAVW bmy_17992T0/1-395 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004882/1-500 LGTKEEMQKI PITLNKGITS NKTYSFLITL DLDIGELIMI KFKWENSLVW BACU001010/1-462 LGTKEEMQKI PITLNKGITS NKTYSFLITL DLDIGELIMI KFKWENSMVW 451 500 ENSBTAP00000007206/1-501 SNVWNTVQTI IPWGRGSLHS GLALKSIRVK VGETQQRMTF CSENMNDLLL ENSP00000348425/1-499 ANVWDTVQTI IPWSTGPRHS GLVLKTIRVK AGETQQRMTF CSENTDDLLL bmy_17992T0/1-395 ---------- ---------- ---------- -GECR----- ---------- ENSTTRP00000004882/1-500 SNVWNTVQTI IPWGRESLHS GLVLKRIRVK AGETQQRMTF CSENMNDLQL BACU001010/1-462 SNVWNTVQNI IPWGRESLPS GLVLKSIRVK AGETQQR--- ---------- 501 550 ENSBTAP00000007206/1-501 HPAREKTFVR CEANSETLKR KIR ENSP00000348425/1-499 RPTQEKIFVK CEIKSKTSKR KIR bmy_17992T0/1-395 -----RAFRR AECSHLSEGS EGP ENSTTRP00000004882/1-500 HPTQEKTFVR CESNSKKLKR KIR BACU001010/1-462 ---------- ---------- ---