KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:26 2014 Check: 00 .. Name: ENSP00000341422/1-563 Len: 652 Check: 8135 Weight: 1.00 Name: bmy_05989T0/1-589 Len: 652 Check: 3052 Weight: 1.00 Name: BACU002412/1-467 Len: 652 Check: 2811 Weight: 1.00 Name: ENSTTRP00000016437/1-424 Len: 652 Check: 8829 Weight: 1.00 Name: ENSBTAP00000007217/1-494 Len: 652 Check: 9961 Weight: 1.00 // 1 50 ENSP00000341422/1-563 MAAAAVTGQR PETAAAEEAS RPQWAPPDHC QAQAAAGLGD GEDAPVRPLC bmy_05989T0/1-589 MAAAVAAGRR PEAVS----- -PQWAPPQHD PAGAAAGLAD CEDTPVRPLC BACU002412/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016437/1-424 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007217/1-494 --MAAAAGPR PEAPS----- -PQWPPRHHD SAEAAARLSD CEDAPVRPLC 51 100 ENSP00000341422/1-563 KPRGICSRAY FLVLMVFVHL YLGNVLALLL FVHYSNGDES SDPGPQHRAQ bmy_05989T0/1-589 NPRGICSRAY FLVLMVFVHL YLGNVLALLL FVHYSNGDDS SDPGPQRRAQ BACU002412/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016437/1-424 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007217/1-494 KPRGICSRAY FLVLMVFVHL YLGNVLALLL FVHYSNGDES SDPGPQRRAQ 101 150 ENSP00000341422/1-563 GPGPEPTLGP LTRLEGIKVG HERKVQLVTD RDHFIRTLSL KPLLFEIPGF bmy_05989T0/1-589 GPVPAPTLAP LTRLEGIKVG YERKVQLVAD RDHFIRTLSL KPLLFEIPGF BACU002412/1-467 ---------- ---------- ---------- ---------- ---MTEIPGF ENSTTRP00000016437/1-424 ---------- ---------- ---------- -------LSL -PLLFEIPGF ENSBTAP00000007217/1-494 GPGPAPTLAP LTRLEGIKVG HERKIQLVAD RDHFIRTLSL KPLLFEIPGF 151 200 ENSP00000341422/1-563 LTDEECRLII HLAQMKGLQR SQILPTEEYE EAMSTMQVSQ LDLFRLLDQN bmy_05989T0/1-589 LSDEECRLII HLAQMKGLQR SQILPTEEYE EAMGTMQISQ LDLFQLLDQN BACU002412/1-467 LSDEECRLII HLAQMKGLQR SQILPTEEYE EAMGTMQISQ LDLFQLLDQN ENSTTRP00000016437/1-424 LSDEECRLII HLAQMKGLQR SQILPTEEYE EAMGTMQISQ LDLFQLLDQN ENSBTAP00000007217/1-494 LSDEECRLVI HLAQMKGLQR SQILPTEEYE EAMGTMQISP LDLFQLLDQN 201 250 ENSP00000341422/1-563 RDGHLQLRE- ---------- VLAQTRLGNG WWMTPESIQE MYAAIKADPD bmy_05989T0/1-589 HDGRLQLHE- ---------- VLAQTRLGNG RWMTPENIQE MYSAIKADPD BACU002412/1-467 HDGRLQLHEV GILGPGVGTR VLAQTRLGNG RWMTPENIQE MYSAIKADPD ENSTTRP00000016437/1-424 HDGRLQLHE- ---------- VLAQTRLGNG RWMTPENIQE MYSAIKADPD ENSBTAP00000007217/1-494 HDGRLQLRE- ---------- VLAQNRLGNG RWMTPETIQE MYSAIKADPD 251 300 ENSP00000341422/1-563 GDGVLSLQEF SNMDLRDFHK YMRSHKAESS ELVRNSHHTW LYQGEGAHHI bmy_05989T0/1-589 GDGVLSQQEF SNMDLRDFHK YMRSHKAESS QLVRNSHHTW LYQGEGAHHV BACU002412/1-467 GDGVLSRQEF SNMDLRDFHK YMRSHKAESS QLVRNSHHTW LYQGEGAHHV ENSTTRP00000016437/1-424 GDGVLSRQEF SNMDLRDFHK YMRSHKAESS QLVRNSHHTW LYQGEGAHHV ENSBTAP00000007217/1-494 GDGVLSLQEF SNMDLRDFHK YMRSHRAESS QLVRNSHHTW LYQGEGAHHV 301 350 ENSP00000341422/1-563 MRAIRQ---- ---------- ---------- ---------- ---------- bmy_05989T0/1-589 MRAIRQ---- ---------- ---------- ---------- ---------- BACU002412/1-467 MRTIRQRASL GWLKELSGEI GAEFVAGPGS TLPAPSGCHL AWGCPAECLL ENSTTRP00000016437/1-424 MRAIRQ---- ---------- ---------- ---------- ---------- ENSBTAP00000007217/1-494 MRAIRQ---- ---------- ---------- ---------- ---------- 351 400 ENSP00000341422/1-563 --RVLRLTRL SPEIVELSEP LQVVRYGEGG HYHAHVDSGP VYPETICSHT bmy_05989T0/1-589 --RVLRLTRL SPEIVELSEP LQVVQYGEGG HYHAHVDSGP VYPETICSHT BACU002412/1-467 PTRVLRLTRL SPEIVELSEP LQVVRYGEGG HYHAHVDSGP VYPETICSHT ENSTTRP00000016437/1-424 --RVLRLTRL SPEIVELSEP LQVVRYGEGG HYHAHVDSGP VYPETICSHT ENSBTAP00000007217/1-494 --RVLRLTRL SPEIVELSEP LQVVRYGEGG HYHAHVDSGP VYPETICSHT 401 450 ENSP00000341422/1-563 KLVANESVPF ETSCRQVSPN WGLPSILRPG TPMTQAQPCT VGVPLGMGPG bmy_05989T0/1-589 KLVANESVPF ETSCRQVPPT WGLPSTPRPG TPMTQAQPCP VGVPLGMGPG BACU002412/1-467 KLVANESVPF ETSCRQVPPT WGLPSTPKPG TPMTQAQPCP VGVPLGMGPG ENSTTRP00000016437/1-424 KLVANESVPF ETSCRQVPPT -GLSSTPRPG TPMTQAQPCP VGLPLGMGPG ENSBTAP00000007217/1-494 KLVANESVPF ETSCR----- ---------- ---------- ---------- 451 500 ENSP00000341422/1-563 DHWVIPVSPW EHPQLG---- ---------- ---TCSVPPL P--------- bmy_05989T0/1-589 ECWAILVEDT PISPLRKRLG LWEEEWARDI LVLTCPVVTD PSLPLWPLGT BACU002412/1-467 ECWAILVEDT PISPL----- ---------- ---------- ---------- ENSTTRP00000016437/1-424 ECWAILVSPW EHPQLG---- ---------- ---TCSTVPL P--------- ENSBTAP00000007217/1-494 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000341422/1-563 ------YSYM TVLFYLNNVT GGGETVFPVA DNRTYDEMSL IQDDVDLRDT bmy_05989T0/1-589 WAAYPAHSYM TVLFYLNNVT GGGETVFPVA DNRTYDEMSL IQDDVDLRDT BACU002412/1-467 -------SYM TVLFYLNNVT GGGETVFPVA DNRTYDEMSL IQDDVDLRDT ENSTTRP00000016437/1-424 ------YSYM TVLFYLNNVT GGGETVFPVA DNRTYDEMSL IQDDVDLRDT ENSBTAP00000007217/1-494 --------YM TVLFYLNNVT GGGETVFPVA DNRTYDEMSL IQDDVDLRDT 551 600 ENSP00000341422/1-563 RRHCDKGNLR VKPQQGTAVF WYNYLPDGQG WVGDVDDYSL HGGCLVTRGT bmy_05989T0/1-589 RRHCDKGNLR VKPRQGTAVF WYNYLPDGQG WVGDVDDYSL HGGCLVTRGT BACU002412/1-467 RRHCDKGNLR VKPRQGTAVF WYNYLPDGQG WVGDVDDYSL HGGCLVTRGT ENSTTRP00000016437/1-424 RRHCDKGNLR VKPRQGTAVF WYNYLPDGQG WVGDVDDYSL HGGCLVTRGT ENSBTAP00000007217/1-494 RRHCDKGNLR VKPRQGTAVF WYNYLPDGQG WVGDVDDYSL HGGCLVTRGT 601 650 ENSP00000341422/1-563 KWIANNWINV DPSRARQALF QQEMARLARE GGTDSQPEWA LDRAYRDARV bmy_05989T0/1-589 KWIANNWINV DPSRERQALF QQEMARLARE GSAYSQPEWA LDRAYRDTRV BACU002412/1-467 KWIANNWINV DPSRARQALF QQEMARLARE GGADSQTEWA LDRAYHDTRV ENSTTRP00000016437/1-424 KWIANNWINV DPSRARQALF QQEMARLARE SGADSQPEWT LDRAYRDTRV ENSBTAP00000007217/1-494 KWIANNWINV DPSRARQALF QQEMARLARE GGADSQPEWA LDRAYRDTRV 651 700 ENSP00000341422/1-563 EL bmy_05989T0/1-589 EL BACU002412/1-467 EL ENSTTRP00000016437/1-424 EL ENSBTAP00000007217/1-494 EL