KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:27 2014 Check: 00 .. Name: ENSP00000423067/1-951 Len: 987 Check: 2510 Weight: 1.00 Name: ENSBTAP00000007218/1-948 Len: 987 Check: 9788 Weight: 1.00 Name: ENSTTRP00000000559/1-946 Len: 987 Check: 2348 Weight: 1.00 Name: bmy_04935T0/1-828 Len: 987 Check: 4983 Weight: 1.00 Name: BACU014961/1-895 Len: 987 Check: 2251 Weight: 1.00 // 1 50 ENSP00000423067/1-951 ---------- -MCCTEGSLR KRDSQRAPEA VLCLQLWQRT VPLDTLKGLG ENSBTAP00000007218/1-948 ---------- -FSCTEDSIR SLDWQRAPEA -LGRR--KR- RSRGRADGSR ENSTTRP00000000559/1-946 ---------- -FKCTEDSLR SRDWQRGPEA --GTR--QRI VPRDA-ESLG bmy_04935T0/1-828 RASPSSSGGS SFSNAQSTVS AHAIGSGDRK RLGTR--QRI VPRDAQTGLG BACU014961/1-895 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000423067/1-951 TCFPSGPELR GAGIAAAMER ASERRTASAL FAGFRALGLF SNDIPHVVRF ENSBTAP00000007218/1-948 ARGLPGTVGA RPPSTAVMER GPGERTASAL FAGFRALGLF SSDIPHAVRF ENSTTRP00000000559/1-946 ARFPLGLEPR GNPTAEAMER SAGDRTASAL FAGFRALGLF SNDIPHVVRF bmy_04935T0/1-828 ARFPPGLQPR GNRTAAAMER GAGDRTASAL FAGFRALGLF SNDIPHVVRF BACU014961/1-895 ---------- -------MER GAGERTASAL FAGFRALGLF SNDIPHVVRF 101 150 ENSP00000423067/1-951 SALKRRFYVT TCVGKSFHTY DVQKLSLVAV SNSVPQDICC MAADGRLVFA ENSBTAP00000007218/1-948 SALKRRFYVT TCVGKSFHTY DVQKLSLVAV SNSLPQDICC MAADGRLVFA ENSTTRP00000000559/1-946 SALKRRFCVT TCVGKSFHTY DVQKLSLVAV XXXXXXXXXX XXXXXXXXXX bmy_04935T0/1-828 SALKRRFYVT TCVGKSFHTY DVQKLSLVAV SNSLPQDICC MAADGRLVFA BACU014961/1-895 SALKRRFYVT TCVGKSFHTY DVQKLSLVAV SNSLPQDICC MAADGRLVFA 151 200 ENSP00000423067/1-951 AYGNVFSAFA RNKEIVHTFK GHKAEIHFLQ PFGDHIISVD TDGILIIWHI ENSBTAP00000007218/1-948 AYGNVFSAFA RNKEVVHTFK GHKAEIHLLQ PFGDHVISVD TDSVLIIWHI ENSTTRP00000000559/1-946 XYGNVFSAFA RNKEVVHTFK GHKAEIHLLQ PFGDHVISVD TDGILIIWHI bmy_04935T0/1-828 AYGNVFSAFA RNKEVVHTFK GHKAEIHLLQ PFGDHVISVD TDSILIIWHI BACU014961/1-895 AYGNVFSAFA RNKEVVHTFK GHKAEIHLLQ PFGDHVISVD TDSILIIWHI 201 250 ENSP00000423067/1-951 YSE------- ----EEYLQL TFDKSVFKIS AILHPSTYLN KILLGSEQGS ENSBTAP00000007218/1-948 YSE------- ----EEYLQL PFDKSVFKIS AILHPSTYLN KILLGSEQGS ENSTTRP00000000559/1-946 YSE------- ----EEYLQL SFDKSVFKIS AILHPSTYLN KILLGSEQGS bmy_04935T0/1-828 YSEGKNQFIA LSWGKEYLQL SFDKSVFKIS AILHPSTYLN KILLGSEQGS BACU014961/1-895 YSE------- ----EEYLQL SFDKSVFKIS AILHPSTYLN KILLGSEQGS 251 300 ENSP00000423067/1-951 LQLWNVKSNK LLYTFPGWKV GVTALQQAPA VDVVAIGLMS GQVIIHNIKF ENSBTAP00000007218/1-948 LQLWNVKSNK LLYTFAGWKV GVTALQQAPA VDVVAVGLMS GQVIIHNIKF ENSTTRP00000000559/1-946 LQLWNVKSNK LLYTFAGWKV GVTALQQAPA VDVVAVGLMS GQIIIHNIKF bmy_04935T0/1-828 LQLWNVKSNK LLYTFAGWKV GVTALQQ--- ---------- ---------- BACU014961/1-895 LQLWNVKSNK LLYTFAGWKV GVTALQQAPA VDVVAVGLIS GQIIIHNIKF 301 350 ENSP00000423067/1-951 NETLMKFRQD WGPITSISFR T-DGHPVMAA GSPCGHIGLW DLEDKKLINQ ENSBTAP00000007218/1-948 DETLMKFRQD WGPITSISFR TADGHPVMAA GSPCGHIGLW DLEDKKLINQ ENSTTRP00000000559/1-946 DETLMKFRQD WGPITSISFR T-DGHPVMAA GSPCGHIGLW DLEDKKLINQ bmy_04935T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU014961/1-895 DETLMKFRQD WGPITSISFR T-DGHPVMAA GSPCGHIGLW DLEDKKLINQ 351 400 ENSP00000423067/1-951 MRNAHSTAIA GLTFLHREPL LVTNGADNAL RIWIFDGPTG EGRLLRFRMG ENSBTAP00000007218/1-948 MRNAHSTAIA GLTFLHREPL LVTNGADNAL RIWIFDGPAG EGRLLRFRMG ENSTTRP00000000559/1-946 MRNAHSTAIA GLTFLHREPL LVTNGADNAL RIWIFDGPTG EGRLLRFRMG bmy_04935T0/1-828 ---------- ---------- ---------- -IWIFDGPTG EGRLLRFRMG BACU014961/1-895 MRNAHSTAIA GLTFLHREPL LVTNGADNAL RIWIFDGPTG EGRLLRFRMG 401 450 ENSP00000423067/1-951 HSAPLTNIRY YGQNGQQILS ASQDGTLQSF STVHEKFNKS LGH------- ENSBTAP00000007218/1-948 HSAPLTRIRY YGQNGQHILS ASQDGTLQSF STVHEKFNKS LGH------- ENSTTRP00000000559/1-946 HSAPLTKIRY YGQNGQQILS ASQDGTLQSF STIHEKFNKS LGH------- bmy_04935T0/1-828 HSAPLTKIRY YGQNGQQILS ASQDGTLQSF STIHEKFNKS LGHEGFIAIF BACU014961/1-895 HSAPLTKIRY YGQNGQQILS ASQDGTLQSF STIHEKFNKS LGH------- 451 500 ENSP00000423067/1-951 ------GLIN KKRVKRKGLQ NTMSVRLPPI TKFAAEEARE SDWDGIIACH ENSBTAP00000007218/1-948 ------GLIN KKRVKRKGLQ NTMSVRLPPV TEFAAEEARE SDWDGIVACH ENSTTRP00000000559/1-946 ------GLIN KKRVKRKGLQ NTMSVRLPPI TKFAAEEARE SDWDGIIACH bmy_04935T0/1-828 PSPLTPGLIN KKRVKRKGLQ NAMSVRLPPI TKFAAEEARE SDWDGIIACH BACU014961/1-895 ------GLIN KKRVKRKGLQ NAMSVRLPPI TKFAAEEARE SDWDGIIACH 501 550 ENSP00000423067/1-951 QGKLSCSTWN YQKSTIGAYF LKPKELKKDD ITATAVDITS CGNFAVIGLS ENSBTAP00000007218/1-948 QGKLSCSTWN YQRSTIGAHF LRPAGLKTDS TTATAVDITS CGNFAVIGLS ENSTTRP00000000559/1-946 QGKLSCSTWN YQRSTIGAYF LKPKELKKDD ITATAVDITS CGNFAVIGLS bmy_04935T0/1-828 QGKLSCSTWN YQRSTIGAYF LKPKELKKDD VTATAVDITS CGNFAVIGLS BACU014961/1-895 QGKLSCSTWN YQRSTIGAYF LKPKELKKDD ITATAVDITS CGNFAVIGLS 551 600 ENSP00000423067/1-951 SGTVDVYNMQ SGIHRGSFGK DQAHKGSVRG VAVDGLNQLT VTTGSEGLLK ENSBTAP00000007218/1-948 SGAVDVYNMQ SGIHRGSFGR DQAHKGSVRG VAVDGLNQLT ITAGSEGVLK ENSTTRP00000000559/1-946 SGTVDVYNMQ SGIHRGSFGK DQAHKGSVRG VAVDGLNQLT ITTGSEGVLK bmy_04935T0/1-828 SGTVDVYNMQ SGIHRGSFGK DQAHKGSVRG VAVDGLNQLT ITTGSEGVLK BACU014961/1-895 SGAVDVYNMQ SGIHRGSFGK DQAHKGSVRG VAVDGLNQLT ITTGSEGVLK 601 650 ENSP00000423067/1-951 FWNFKNKILI HSVSLSSSPN IMLLHRDSGI LGLALDDFSI SVLDIETRKI ENSBTAP00000007218/1-948 FWNFKNKVLI HSVSLDSSPN LMLLHRDSGI LGLALDDFSI SVLDIETRKI ENSTTRP00000000559/1-946 FWNFKNKVLI HSVSLDSSPN MMLLHRDSGI LGLALDDFSI TVLDIETRKI bmy_04935T0/1-828 FWNFKNKVLI HSVSLDPSPN MMLLHRDSGI LGLALDDFSI SVLDIETRKI BACU014961/1-895 FWNFKNKVLI HSVSLDSSPN IMLLHRDSGI LGLALDDFSI SVFDIETRKI 651 700 ENSP00000423067/1-951 VREFSGHQGQ INDMAFSPDG RWLISAAMDC SIRTWDLPSG CLIDCFLLDS ENSBTAP00000007218/1-948 VREFSGHQGQ INDMTFSPDG RWLISASMDC SIRTWDLPSG CLIDSFLLDS ENSTTRP00000000559/1-946 VREFSGHQGQ INDMAFSPDG RWLISASMDC SIRTWDLPSG CLIDSFLLDS bmy_04935T0/1-828 VREFSGHQGQ INDMAFSPDG RWLISASMDC SIRTWDLPSG CLIDSFLLDS BACU014961/1-895 VRGFSGHQGQ INDMAFSPDG RWLISASMDC SIRTWDLPSG CLIDSFLLDS 701 750 ENSP00000423067/1-951 APLNVSMSPT GDFLATSHVD HLGIYLWSNI SLYSVVSLRP LPADYVPSIV ENSBTAP00000007218/1-948 APLNVTMSPT GDFLATSHVD HLGVYLWSNI SLYSVVSLRP LPTDYVPSVV ENSTTRP00000000559/1-946 APLNVTMSPT GDFLATSHVD HLGIYLWSNI SLYSVVSLRP LPTDYVPSVV bmy_04935T0/1-828 APLNVTMSPT GDFLATSHVD HLGIYLWSNI SLYSVVSLRP LPTDYVPSVV BACU014961/1-895 APLNVTMSPT GDFLATSHVD HLGIYLWSNI SLYSVVSLRP LPTDYVPSVV 751 800 ENSP00000423067/1-951 MLPGTCQTQD VEVSEETVEP SDELIEYDSP EQLNEQLVTL SLLPESRWKN ENSBTAP00000007218/1-948 MLPGTCQTQD VELSEETVEP SEEMIEYDSP EQLNEQLVTL SLLPESRWKN ENSTTRP00000000559/1-946 MLPGTCQTQD VELLEETTEP SDEMIEYDSP EQLNEQLVTL SLLPESRWKN bmy_04935T0/1-828 MLPGTCQTQD VELSEETVEP SDEMIEYDSP EQLNEQLVTL SLLPESRWKN BACU014961/1-895 MLPGTCQTQD VELSEETIEP SDEMIEYDSP EQLNEQLVTL SLLPESRWKN 801 850 ENSP00000423067/1-951 LLNLDVIKKK NKPKEPPKVP KSAPFFIPTI PGLVPRYAAP EQNNDPQQSK ENSBTAP00000007218/1-948 LLNLDVIKKK NKPKEPPKVP KSAPFFIPTI PGLVPRYAAP EQNNDPQQSK ENSTTRP00000000559/1-946 LLNLDVIKKK NKPKEPPKVP KSAPFFIPTV PGLVPRYAAP EQNSDPQQSK bmy_04935T0/1-828 LLNLDVIKKK NKPKEPPKVP KSAPFFIPTV PGLVPRYAAP EQNSDPQQSK BACU014961/1-895 LLNLDVIKKK NKPKEPPKVP KSAPFFIPTV PGLVPRYAAP EQNSDPQQSK 851 900 ENSP00000423067/1-951 VVNLGVLAQK SDFCLKLEEG LVNNKYDTAL NLLKESGPSG IETELRSLSP ENSBTAP00000007218/1-948 VVNLGILAQK SDFCLKLEEG LVNNKYEAAV NLLKELGPSG IETELRSLSP ENSTTRP00000000559/1-946 VVNLGILAQK SDFCLKLEEA LVNNKYEAAL NLLKELGPSG IETELRSLSP bmy_04935T0/1-828 VVNLGILAQK SDFCLKLEEG LVNNK----- ---------- ---------- BACU014961/1-895 VVNLGILAQK SDFCLKLEEG LVNNKYEAAL NLLKELGPSG IETELRSLSP 901 950 ENSP00000423067/1-951 DCGGSIEVMQ SFLKMIGMML DRKRDFELAQ AYLALFLKLH LKMLPSEPVL ENSBTAP00000007218/1-948 DCGGSVGIMK SFLKMIGTML DRKRDFELAQ AYLALFLKLH LKTLPSEPVL ENSTTRP00000000559/1-946 DCGGSVEVMK SFLKMIRMML DKKRDFELAQ AYLALFLKLH LKMLPSEPVL bmy_04935T0/1-828 ---------- ---------- --------CK LNYKIFYQLH LKMLPSEPVL BACU014961/1-895 DCGGSVEVMK SFLKMIGMML DKKRDFELAQ AYLALFLKLH LKMLPSEPVL 951 1000 ENSP00000423067/1-951 LEEITNLSSQ VEENWTHLQS LFNQSMCILN YLKSALL ENSBTAP00000007218/1-948 LEEMTKLSSQ LEENWIHLQL LFNQSLCVLN YIKSALL ENSTTRP00000000559/1-946 LEEMTKLSSQ LEENWIHLQS LFNQSMCVLN YIKSALL bmy_04935T0/1-828 LEEMTKLSSQ LEENWIHLQS LFNQSMCVLN YIKSALL BACU014961/1-895 LEEVTKLSSQ LEENWIHLQS LFNQSMCVLN YIKSALL