KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:29 2014 Check: 00 .. Name: BACU007399/1-352 Len: 428 Check: 8281 Weight: 1.00 Name: ENSP00000046087/1-351 Len: 428 Check: 5900 Weight: 1.00 Name: bmy_12110T0/1-236 Len: 428 Check: 5226 Weight: 1.00 Name: ENSTTRP00000007039/1-351 Len: 428 Check: 2280 Weight: 1.00 Name: ENSBTAP00000007229/1-325 Len: 428 Check: 4136 Weight: 1.00 // 1 50 BACU007399/1-352 MFNLNRVDNL HIGCVLLLKT DGLDFFFTDH ENQSILTTGE SGAGKTVNTE ENSP00000046087/1-351 ---------- ---------- ---------- ---------- ---------- bmy_12110T0/1-236 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007039/1-351 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007229/1-325 ---------- ---------- ---------- ---------- ---------- 51 100 BACU007399/1-352 KCVIQYFATI AATGEKKDET GKMQGTLEYQ IINANPLLEA FGNAKMVRND ENSP00000046087/1-351 ---------M EAFALGPARR GRRRTRAAGS LLSRAAILLF I-SAFLVRVP bmy_12110T0/1-236 ---------M EASAPGRARR GWRRSRAAGS PLSRAAVVLV F-SALVLRAI ENSTTRP00000007039/1-351 ---------M EASAPCRARR GWRRSRAAGF PLSRAAVVLV F-SALVLRAP ENSBTAP00000007229/1-325 ---------M EASAPGRARR GWRRARAAGS PLSRAAMVLV V-SALVLWAP 101 150 BACU007399/1-352 NSSRFSKSNE VLKLISGNYI GYLARLPRGI RLTQDSMKIV GSPNFPVKVY ENSP00000046087/1-351 SS-------- ---------V GHLVRLPRAF RLTKDSVKIV GSTSFPVKAY bmy_12110T0/1-236 AS-------- ---------- ---------- ---------- ------VKVY ENSTTRP00000007039/1-351 PS-------- ---------V GYLAQLPRGI HLTQDSMKIV GSPNFPVKVY ENSBTAP00000007229/1-325 PS-------- ---------V GYLDRLPRSA QLPQDSVKIV GSPNIPVKVY 151 200 BACU007399/1-352 VMLHQKSPHV LCVTQRLRNS ELIDPSFQWH GPKGKIIS-E NSTAQVTSTG ENSP00000046087/1-351 VMLHQKSPHV LCVTQQLRNA ELIDPSFQWY GPKGKVVSVE NRTAQITSTG bmy_12110T0/1-236 VMLHQRSPHM LCVTQRLRNS ELVDPSFQWH GPKGKIIS-E NNTAQVTSTG ENSTTRP00000007039/1-351 VMLHQKSPHM LCVTQQLRNS ELIDPSFQWH GPKGRIISVG NSTAQVTSTG ENSBTAP00000007229/1-325 VMLHQKSPHV LCVTQRLRNS ELVDPSFQWH GPKGKIIS-E NSTAQITSTG 201 250 BACU007399/1-352 SLVFQNFEES MSGVYTCFLE YKPTVEEVVK NLQLKYIVYA YREPQYYYQF ENSP00000046087/1-351 SLVFQNFEES MSGIYTCFLE YKPTVEEIVK RLQLKYAIYA YREPHYYYQF bmy_12110T0/1-236 SLVLQNFEES MSGVYTCFLE YKPTVEEVVK NLELKYIVYA YREPQYYYQF ENSTTRP00000007039/1-351 SLVFQNFKES MSGVYTCFLE YKPTVEEVVK NLQLKYVVYA YREPHYYYQF ENSBTAP00000007229/1-325 SLVFQNFEES MSGVYTCFLE YKPTVEEVIK NLQLKYVVYA YREPHYYYQF 251 300 BACU007399/1-352 TARYHAAPCN SVYNVSFEKK LLQILSKLVL DLSCQVFLLK SECHRVKMQR ENSP00000046087/1-351 TARYHAAPCN SIYNISFEKK LLQILSKLLL DLSCEISLLK SECHRVKMQR bmy_12110T0/1-236 TARYHAAPCN SVYNVSFEKK LLQILSKLVL DLSCQIFLLK SECHRVKMQR ENSTTRP00000007039/1-351 TARYHAAPCN TIYNVSFEKK LLEILSKLVL DLSCQVFLLK SECHHVKMQR ENSBTAP00000007229/1-325 TARYHAAPCN SIYNISFEKK LLQILSKLVL DLSCEVSLLK SECHRVKMQR 301 350 BACU007399/1-352 AGLQNELFFT FS----DTEK GPNPCADHSC GSSKRLSK-- -----FFIGT ENSP00000046087/1-351 AGLQNELFFA FSVSSLDTEK GPKRCTDHNC EPYKRLFKAK NLIERFFNQQ bmy_12110T0/1-236 AGLQNELFFT FS-------- GFISCGATTI -SVTMLSEES NL-------- ENSTTRP00000007039/1-351 AGLQNELFFT FSVSSLDTEK GRKPCADHSC ESSKRLSKAK ILIERFFNQQ ENSBTAP00000007229/1-325 AGLQNELFFT FSVSSLDTEK GPKPCADHSC ESSKRLSKAK NLIERFFNQQ 351 400 BACU007399/1-352 LSCKIRT--- -PYLSFAH-- ---------- ---------- ---------- ENSP00000046087/1-351 VEILGRRAEQ LPQIYYIEGT LQMVWINRCF PGYGMNVQQH PKCPECCVIC bmy_12110T0/1-236 ---------- ---LSFASGL K--------- ---------- ---------- ENSTTRP00000007039/1-351 VEVLGRRAEP LPEIYYIEGT LQMVWINRCF PGYGVNXXXX XXXXXXXXIC ENSBTAP00000007229/1-325 VEVLGRRAEP LPEIYYIEGT LQMVWINRCF PGYGMNILKH PRCPEC---C 401 450 BACU007399/1-352 ---------- ---------- -------- ENSP00000046087/1-351 SPGSYNPRDG IHCLQCNSSL VYGAKTCL bmy_12110T0/1-236 ---------- ---------- -------- ENSTTRP00000007039/1-351 SPGSYNSHDG IHCLQCNSSL VFGAKACL ENSBTAP00000007229/1-325 GLGHIK---- ---------- --------