KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:31 2014 Check: 00 .. Name: ENSTTRP00000010973/1-955 Len: 1154 Check: 8848 Weight: 1.00 Name: bmy_11034T0/1-685 Len: 1154 Check: 7248 Weight: 1.00 Name: ENSP00000261381/1-959 Len: 1154 Check: 7960 Weight: 1.00 Name: ENSBTAP00000007264/1-828 Len: 1154 Check: 8052 Weight: 1.00 // 1 50 ENSTTRP00000010973/1-955 MVAAPCARRL ARRSHSALLA ALTVLLLQTL VVWNFSSLDS GAGERRGGAS bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 MVAAPCARRL ARRSHSALLA ALTVLLLQTL VVWNFSSLDS GAGERRGGAA ENSBTAP00000007264/1-828 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010973/1-955 VGGAEQPP-- PATRRERRDL PAEPAAXXXX XXXXXXXXXX XXXXXXXXXX bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 VGGGEQPPPA PAPRRERRDL PAEPAAARGG GGGGGGGGGG RGPQARARGG ENSBTAP00000007264/1-828 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010973/1-955 XXXXXXXXXX XXXXXXXXXX XAAQPSPVIT LEAQDGYFSH RPKEKVRTDS bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 GPGEPRGQQP ASRGALPARA LDPHPSPLIT LETQDGYFSH RPKEKVRTDS ENSBTAP00000007264/1-828 ---------- ---------- ---------- -QALDGYFSH RPKEKVRTDS 151 200 ENSTTRP00000010973/1-955 NNENSVPKDF ENVDNSNFAP RTQKQKHQPE LTKKPPRGQK ELLKRKLGQE bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 NNENSVPKDF ENVDNSNFAP RTQKQKHQPE LAKKPPSRQK ELLKRKLEQQ ENSBTAP00000007264/1-828 NNENSVPKDF ENVDNSNFAP RTQKQKHQPE LTKKPPRGQK ELLKRKREQE 201 250 ENSTTRP00000010973/1-955 EKGQGHLSPG KGANEVLPPG ARAPVNGSRG KDAPRQPHAR KSGGSSPEIK bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 EKGKGHTFPG KGPGEVLPPG DRAAANSSHG KDVSRPPHAR KTGGSSPETK ENSBTAP00000007264/1-828 EKGRGRPSPG KGPNEVLPPG ERVAVNGSRG KDAPRPPHAR KSGGNSPEAK 251 300 ENSTTRP00000010973/1-955 SDRPLKCDIS GKEAISALSR SKSKHCRQEI GETYCRHKLG LLMPEKVTRF bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 YDQPPKCDIS GKEAISALSR AKSKHCRQEI GETYCRHKLG LLMPEKVTRF ENSBTAP00000007264/1-828 PDQPLRCDIS GKEAISALSR SKSKHCRQEI GETYCRHKLG LLMPEKVTRL 301 350 ENSTTRP00000010973/1-955 CPLEGKANKN IQWDEDSVEY MLANRVRIAF VLVVHGRASR QLQRMFKAIY bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 CPLEGKANKN VQWDEDSVEY MPANPVRIAF VLVVHGRASR QLQRMFKAIY ENSBTAP00000007264/1-828 CPLEGKANKN VQWDEDSVEY MLANPVRIAF VLVVHGRASR QLQRMFKAIY 351 400 ENSTTRP00000010973/1-955 HRDHFYYIHV DKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11034T0/1-685 ---------- ---------- ---------- ---------- ---------- ENSP00000261381/1-959 HKDHFYYIHV DKRSNYLHRQ VLQVSRQYSN VRVTPWRMAT IWGGASLLST ENSBTAP00000007264/1-828 HKDHFYYIHV DKRSNYLHRQ VLQFARQYSN VRVTPWRMAT IWGGASLLST 401 450 ENSTTRP00000010973/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TNDQLVAFLS RYREMNFLKS bmy_11034T0/1-685 ---------- -----MALLT NLD------- ---------- ---------- ENSP00000261381/1-959 YLQSMRDLLE MTDWPWDFFI NLSAADYPIR TNDQLVAFLS RYRDMNFLKS ENSBTAP00000007264/1-828 YLQSMRDLLE MTDWPWDFFI NLSAADYPIR TNDQLVAFLS RYRDMNFLKS 451 500 ENSTTRP00000010973/1-955 HGRDNARFIR KQGLDRLFLE CDAHMWRLGD RRIPEGIAVD GGSDWFLLNR bmy_11034T0/1-685 -------FAL GKGLDRLFLE CDAHMWRLGD RRIPEGIAVD GGSDWFLLNR ENSP00000261381/1-959 HGRDNARFIR KQGLDRLFLE CDAHMWRLGD RRIPEGIAVD GGSDWFLLNR ENSBTAP00000007264/1-828 HGRDNARFIR KQGLDRLFLE CDAHMWRLGD RRIPEGIAVD GGSDWFLLNR 501 550 ENSTTRP00000010973/1-955 KFVEYVTFST DDLVTKMKQF YSYTLLPAEX XXXXXXXXXX XXXXXXXXXX bmy_11034T0/1-685 KFVEYVTFST DDLVTKMKQF YSYTLLPAES FFHTVLENSP HCDTMVDNNL ENSP00000261381/1-959 RFVEYVTFST DDLVTKMKQF YSYTLLPAES FFHTVLENSP HCDTMVDNNL ENSBTAP00000007264/1-828 KFVEYVTFST DDLVTKMKQF YSYTLLPAES FFHTVLENSP HCDTMVDNNL 551 600 ENSTTRP00000010973/1-955 XXXXXXXXXX XXXXXXHIVD WCGCSPNDFK PQDFHRFQQT ARPTFFARKF bmy_11034T0/1-685 RITNWNRKLG CKCQYKHIVD WCGCSPNDFK PQDFHRFQ-- ---------F ENSP00000261381/1-959 RITNWNRKLG CKCQYKHIVD WCGCSPNDFK PQDFHRFQQT ARPTFFARKF ENSBTAP00000007264/1-828 RITNWNRKLG CKCQYKHIVD WCGCSPNDFK PQDFHRFQQT ARPTFFARKF 601 650 ENSTTRP00000010973/1-955 EAVVNQEIIG QLDYYLYGNY PAGTPGLRAY WENVYDEPDG IHSLSDVTLT bmy_11034T0/1-685 EAVVNQEIIG QLDYYLYGNY PAGTPGLRSY WENVYDEPDG IHSLSDVTLT ENSP00000261381/1-959 EAVVNQEIIG QLDYYLYGNY PAGTPGLRSY WENVYDEPDG IHSLSDVTLT ENSBTAP00000007264/1-828 EAVVNQEIIG QLDYYLYGNY PAGTPGLRSY WENVYDEPDG IHSLSDVTLT 651 700 ENSTTRP00000010973/1-955 LYHSFSRLGL RRAELLLHDA GENSCRYYSN GHPASVHLYF LAD-LQG-LI bmy_11034T0/1-685 LYHSFSRLGL RRAELLLHNA GENSCRYYPM GHPASVHLYF LADRFQGFLI ENSP00000261381/1-959 LYHSFARLGL RRAETSLHTD GENSCRYYPM GHPASVHLYF LADRFQGFLI ENSBTAP00000007264/1-828 LYHSFSRLGL RRAEASLRAP GESSCRYYPM GHPASVHLYF LADRFQGFLI 701 750 ENSTTRP00000010973/1-955 KHHAINLAVS KLETLETWVM PKKVFKIASP PSDFGRLQFS EVGTDWDAKE bmy_11034T0/1-685 KHHATNLAVS KLETLETWVM PKKVFKIASP PSDFGRLQFS EVGTDWDAKE ENSP00000261381/1-959 KHHATNLAVS KLETLETWVM PKKVFKIASP PSDFGRLQFS EVGTDWDAKE ENSBTAP00000007264/1-828 KHHATNLAVS KLETLETWVM PKKVFKIASP PSDFGRLQFS EVGTDWDAKE 751 800 ENSTTRP00000010973/1-955 RLFRNFGGLL GPMDEPVGMQ KWGKGPNVTV TVVWVDPVNI IAATYDILIE bmy_11034T0/1-685 RLFRNFGGLL GPMDEPVGMQ KWGKGPNVTV TVVWVDPVNI IAATYDILIE ENSP00000261381/1-959 RLFRNFGGLL GPMDEPVGMQ KWGKGPNVTV TVIWVDPVNV IAATYDILIE ENSBTAP00000007264/1-828 RLFRNFGGLL GPMDEPVGMQ KWGKGPNVTV TVIWVDPVNI IAATYDILIE 801 850 ENSTTRP00000010973/1-955 STAEFTHYKP PLNLPLRPGV WTVKILHHWV PVAETKFLVA PLTFSNRQPI bmy_11034T0/1-685 STAEFTHYKP PLNLPLRPGV WTVKILHHWV PVAETKFLVA PLSFSNRQPI ENSP00000261381/1-959 STAEFTHYKP PLNLPLRPGV WTVKILHHWV PVAETKFLVA PLTFSNRQPI ENSBTAP00000007264/1-828 STAEFTHYKP PLNLPLRPGV WTVKILHHWV PVAETKFLVA PLTFSNRQPI 851 900 ENSTTRP00000010973/1-955 KPEEALRLHN GPLRSAYMEQ SFQSLNPVLS LPINPAQVEL ARRNAASTGA bmy_11034T0/1-685 KPGEYFQYFC G--------- SFQSLNPVLS LPISPAQVEE ARRNAASTGA ENSP00000261381/1-959 KPEEALKLHN GPLRNAYMEQ SFQSLNPVLS LPINPAQVEQ ARRNAASTGT ENSBTAP00000007264/1-828 KPEEALRLHN GPLRSAYMEQ SFQSLNPVLS LPINPAQVEQ ARRNAASAGA 901 950 ENSTTRP00000010973/1-955 ALERWLDSLV GGMWTAMDIC ATGPTVCPVM QTCSQTAWSS FSPDPKSELG bmy_11034T0/1-685 ALERWLDSLV GGMWTAMDIC ATGPTVCPVM QTCSQTAWSS FSPDPKSEPG ENSP00000261381/1-959 ALEGWLDSLV GGMWTAMDIC ATGPTACPVM QTCSQTAWSS FSPDPKSELG ENSBTAP00000007264/1-828 ILERWLDSLV GGMWTAMDIC ATGPSACPVM QTCSQTAWSS FSPDPKSELG 951 1000 ENSTTRP00000010973/1-955 AVKPDGRLR- ---------- ---------- ---------- ---------- bmy_11034T0/1-685 AVKPDGRLRC QQAHLTHSVL FLQLVNYVIL LTEAAFIHKR PPPPALPLPP ENSP00000261381/1-959 AVKPDGRLR- ---------- ---------- ---------- ---------- ENSBTAP00000007264/1-828 AVKPDGRLR- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000010973/1-955 ---------- ---------- ---------- ---------- ---------- bmy_11034T0/1-685 PLIPQPLTSV SFCLSAALSI YLSSLSLSAL RSPCPQWEAG DLDTVRRTPQ ENSP00000261381/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007264/1-828 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000010973/1-955 ---------- ---------- ---------- ---------- ---------- bmy_11034T0/1-685 PASSTGRKWG ALGNTGASLF LMQGVSVTQP SSSGGVGIPE PSPPPAPGTG ENSP00000261381/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007264/1-828 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000010973/1-955 ---------- ---------- ---------- ---------- ---------- bmy_11034T0/1-685 TRQASDLRRE AVPAAGPGAS PLPPSLPSRG QSNRGPACEE KQAPSTPWRK ENSP00000261381/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007264/1-828 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000010973/1-955 ---- bmy_11034T0/1-685 RDLF ENSP00000261381/1-959 ---- ENSBTAP00000007264/1-828 ----