KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:32 2014 Check: 00 .. Name: ENSTTRP00000006716/1-388 Len: 392 Check: 8092 Weight: 1.00 Name: ENSP00000377854/1-392 Len: 392 Check: 8348 Weight: 1.00 Name: ENSBTAP00000007266/1-392 Len: 392 Check: 8382 Weight: 1.00 Name: bmy_04590T0/1-301 Len: 392 Check: 152 Weight: 1.00 Name: BACU007280/1-341 Len: 392 Check: 4441 Weight: 1.00 // 1 50 ENSTTRP00000006716/1-388 ----HENAAL ALHEGCRLPA EGGPANDQVM AQPGSGCKAT TRCLEGTAPP ENSP00000377854/1-392 MYWKHENAAP ALPEGCRLPA EGGPATDQVM AQPGSGCKAT TRCLEGTAPP ENSBTAP00000007266/1-392 MYWKHENAAP ALPEGCRLPA EGGPATDQVM AQPGSGCKAT TRCLEGTAPP bmy_04590T0/1-301 ---------- ---------- ---------M AQPGSGCKAT TRCLEGTAPP BACU007280/1-341 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006716/1-388 AMAQSDAEAL AGPLDKDEGR ASPCTPSTPS VCSPPSAASS VPSAGKNICS ENSP00000377854/1-392 AMAQSDAEAL AGALDKDEGQ ASPCTPSTPS VCSPPSAASS VPSAGKNICS ENSBTAP00000007266/1-392 AMAQSDAEAL AGGLDKDEGR ASPCTPSTPS VCSPPSAASS VPSAGKNICS bmy_04590T0/1-301 AMAQSDAEAL AGPLDKDEGR ASPCTPSTPS VCSPPSAASS ---------- BACU007280/1-341 -MAQSDAEAL AGPLDKDEGR ASPCTPSTPS VCSPPSAASS VPSAGKNICS 101 150 ENSTTRP00000006716/1-388 SCGLEILDRY LLKXXXXXXX XXXXXXXXXX XXLRQQNSCY IKNKEIFCKM ENSP00000377854/1-392 SCGLEILDRY LLKVNNLIWH VRCLECSVCR TSLRQQNSCY IKNKEIFCKM ENSBTAP00000007266/1-392 SCGLEILDRY LLKVNNLIWH VRCLECSVCR TSLRQQNSCY IKNKEIFCKM bmy_04590T0/1-301 ---------- ---VNNLIWH VRCLECSVCR TSLRQQNSCY IKNKEIFCKM BACU007280/1-341 SCGLEILDRY LLKVNNLIWH VRCLECSVCR TSLRQQNSCY IKNKEIFCKM 151 200 ENSTTRP00000006716/1-388 DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFXXXX XXXXXXXGEE ENSP00000377854/1-392 DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFACFS CKRQLSTGEE ENSBTAP00000007266/1-392 DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFACFS CKRQLSTGEE bmy_04590T0/1-301 DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFACFS CKRQLSTGEE BACU007280/1-341 DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFACFS CKRQLSTGEE 201 250 ENSTTRP00000006716/1-388 FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR ENSP00000377854/1-392 FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR ENSBTAP00000007266/1-392 FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR bmy_04590T0/1-301 FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR BACU007280/1-341 FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR 251 300 ENSTTRP00000006716/1-388 ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR ENSP00000377854/1-392 ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR ENSBTAP00000007266/1-392 ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR bmy_04590T0/1-301 ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR BACU007280/1-341 ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR 301 350 ENSTTRP00000006716/1-388 ARHKKHTPQH PVPPSGAPPS RLPSALSDDI HYSPFSSPXX XXXXXXXXXX ENSP00000377854/1-392 ARHKKHTPQH PVPPSGAPPS RLPSALSDDI HYTPFSSPER ARMVTLHGYI ENSBTAP00000007266/1-392 ARHKKHTPQH PVPPSGAQPS RLPSALSDDI HYSPFSSPER ARMVTLHGYI bmy_04590T0/1-301 ARHKKHTPQH PVPPSGAPPS RLPSALSDDI HYSPFSSPER ARMVTLHGYI BACU007280/1-341 ARHKKHTPQH PVPPSGAPPS RLPSALSDDI HYSPFSSPER ARMVTLHGYI 351 400 ENSTTRP00000006716/1-388 XXQVQCGQVH CRLPYTAPPV HLKADMDGPL SNRGEKVILF QY ENSP00000377854/1-392 ESQVQCGQVH CRLPYTAPPV HLKADMDGPL SNRGEKVILF QY ENSBTAP00000007266/1-392 ESQVQCGQVH CRLPYTAPPV HLKADMDGPL SNRGEKVILF QY bmy_04590T0/1-301 ESK------- ---------- ---------- ---------- -- BACU007280/1-341 ESQVQCGQVH CRLPYTAPPV HLKADMDGPL SNRGEKVILF QY