KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:32 2014 Check: 00 .. Name: ENSP00000467494/1-466 Len: 564 Check: 265 Weight: 1.00 Name: ENSTTRP00000013549/1-466 Len: 564 Check: 4991 Weight: 1.00 Name: ENSBTAP00000007271/1-466 Len: 564 Check: 4583 Weight: 1.00 Name: bmy_06566T0/1-520 Len: 564 Check: 9262 Weight: 1.00 Name: BACU002117/1-504 Len: 564 Check: 4305 Weight: 1.00 // 1 50 ENSP00000467494/1-466 MTTSPILQLL LRLSLCGLLL QRAET----- GSKGQTAGEL YQRWERYRRE ENSTTRP00000013549/1-466 MPSCPPWWLL LLLSLSEPLL RRAEX----- XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007271/1-466 MPTCPPWWLL LLLSLWEPLL RSAEA----- GSEGQTAGEL YQRWERYRRE bmy_06566T0/1-520 MPCLPHDAEL STLVAATATL AVGAAAPEGG GSEGQTAGEL YQRWERYRRE BACU002117/1-504 MPNCPPWWPL LLLSLWEPLL RRAEA----- GSEGQTTGEL YQRWERYRRE 51 100 ENSP00000467494/1-466 CQETLAAAEP PS-------- ---------- ----GLACNG SFDMYVCWDY ENSTTRP00000013549/1-466 XXXXXXXXXX XX-------- ---------- ----XLACNG SFDMYVCWDH ENSBTAP00000007271/1-466 CQETLEASEP PA-------- ---------- ----GLACNG SFDMYVCWDY bmy_06566T0/1-520 CQATLEAAAP PAGGEALGER YRRSTRHLAP TPTPGLACNG SFDMYVCWDH BACU002117/1-504 CQATLEAAAP PA-------- ---------- ----GLACNG SFDMYVCWDH 101 150 ENSP00000467494/1-466 AAPNATARAS CPWYLPWHHH VAAGFVLRQC GSDGQWGLWR DHTQCENPEK ENSTTRP00000013549/1-466 TAPNATARAS CPWYLPWNRH VAAGFVLRHC GSDGQWGPWR DHSQCENPEK ENSBTAP00000007271/1-466 TAPNATARAS CPWYLPWHGH VAKGFVLRQC GSDGQWGPWR DHSQCENPEK bmy_06566T0/1-520 TAPNATARAS CPWYLPWNRH VAAGFVLRHC GSDGQWGPWR DHSQCENPEK BACU002117/1-504 TAPNATARAS CPWYLPWNRH VAAGFVLRHC GSDGQWGPWR DHSQCENPEK 151 200 ENSP00000467494/1-466 NEAFLDQRLI LERLQVMYTV GYSLSLATLL LALLILSLFR RLHCTRNYIH ENSTTRP00000013549/1-466 NGVFQDQRLS LERLQVVYTV GYSLSLATLL LALLILSFFR RLRCTRNYIH ENSBTAP00000007271/1-466 NGVFQDQRLT LERLQVVYTV GYSLSLATLL FALLILSTFR RLRCTRNYIH bmy_06566T0/1-520 NGVFQDQRLS LERLQVVYTV GYSLSLATLL LALLILSFFR RLRCTRNYIH BACU002117/1-504 NGVFQDQRLS LERLQVVYTV GYSLSLATLL LALLILSFFR RLRCTRNYIH 201 250 ENSP00000467494/1-466 INLFTSFMLR AAAILSRDRL LPRPGPYLGD QALALWNQAL AACRTAQIVT ENSTTRP00000013549/1-466 INLFMSFMLR AAAILTRDRL LPPPGPYPGD QAPILWNRAL AACRTAQILT ENSBTAP00000007271/1-466 INLFTSFMLR AAAILTRDRL LPPPGPYPGD QVLTLWNQAL VACRTAQIVT bmy_06566T0/1-520 INLFTSFMLR AAAILTRDRL LPPPGPHPGD QAPILWDQAL AACRTAQILT BACU002117/1-504 INLFTSFMLR AAAILTRDRL LPPPGPHPGD QAPILWDQAL AACRTAQILT 251 300 ENSP00000467494/1-466 QYCVGANYTW LLVEGVYLHS LLVLVGGSEE GHFRYYLLLG W--------- ENSTTRP00000013549/1-466 QYCVGANYTW LLVEGIYLHS LLVLVGGSEE GHFRCYMLLG W--------- ENSBTAP00000007271/1-466 QYCVGANYTW LLVEGIYLHS LLVLVGGSEK GHFRCYMLLG W--------- bmy_06566T0/1-520 QYCVGANYTW LLVEGIYLHS LLVLVGGSEE GHFRCYMLLG W--------- BACU002117/1-504 QYCVGANYTW LLVEGIYLHS LLVLVGGSEE GHFRCYMLLG WGFCLPLPAG 301 350 ENSP00000467494/1-466 ---------- ---------- --------GA PALFVIPWVI VRYLYENTQC ENSTTRP00000013549/1-466 ---------- ---------- --------GA PALFVIPWVI VRYLYENTQC ENSBTAP00000007271/1-466 ---------- ---------- --------GA PTLFVIPWVI VRYLFENTQC bmy_06566T0/1-520 ---------- ---------- --------GA PALFVIPWVI VRYLYENTQC BACU002117/1-504 EFLGSWAWRA RARSDSCGGV GGGGWVCTGA PALFVIPWVI VRYLYENTQC 351 400 ENSP00000467494/1-466 WERNEVKAIW WIIRTPILMT ILINFLIFIR ILGILLSKLR TRQMRCRDYR ENSTTRP00000013549/1-466 WERNDIKGIW WIIRTPILLT ILINFLIFIR ILGILASKLR TQQMRCPDYR ENSBTAP00000007271/1-466 WERNDIKAIW WIIRTPILLT ILINFLIFVR ILGILVSKLR TRQMRCPDYR bmy_06566T0/1-520 WERNDIKGIW WIIRTPILLT ILINFLIFIR ILGILASKLR TQQMRCPDYR BACU002117/1-504 WERNDIKGIW WIIRTPILLT ILINFLIFIR ILGILASKLR TQQMRCPDYR 401 450 ENSP00000467494/1-466 LRLARSTLTL VPLLGVHEVV FAPVTEEQAR GALRFAKLGF EIFLSSFQGF ENSTTRP00000013549/1-466 LRLARSTLTL VPLLGVHEVV FAPVTEEQAR GALRLAKLSF EIFLSSFQGF ENSBTAP00000007271/1-466 LRLARSTLTL VPLLGVHEVV FAPVTEEQAR GALRLAKLGF EIFLSSFQGF bmy_06566T0/1-520 LRLARSTLTL VPLLGVHEVV FAPVTEEQAR GALRLAKLSF EIFLSSFQGF BACU002117/1-504 LRLARSTLTL VPLLGVHEVV FAPVTEEQAR GALRLAKLSF EIFLSSFQGF 451 500 ENSP00000467494/1-466 LVSVLYCFIN KE-------- ---------- ---------- ---VQSEIRR ENSTTRP00000013549/1-466 LVSVLYCFIN KE-------- ---------- ---------- ---VQSEIRR ENSBTAP00000007271/1-466 LVSVLYCFIN KE-------- ---------- ---------- ---VQSEIRR bmy_06566T0/1-520 LVSVLYCFIN KEVGRAPDRR PRPLPAAQGM ARPAPPLSAV PLQVQSEIRR BACU002117/1-504 LVSVLYCFIN KE-------- ---------- ---------- ---VQSEIRR 501 550 ENSP00000467494/1-466 GWHHCRLRRS LGEEQRQLPE RAFRALPSGS GPGEVPTSRG LSSGTLPG-- ENSTTRP00000013549/1-466 GWHQCRLRHR LGEEPCQPPE RAFRTLPSGS GPGQVAAGRA LCSRTLPG-- ENSBTAP00000007271/1-466 GWHRCRLRHS LSEEPRQRPE PVFRTLPSGS GPGQVASGRA LCSRTLPG-- bmy_06566T0/1-520 GWHRCRLRHR LGEEPCQPPE RAFRTLPSGS GPGQVAADRA LCSRTLPA-- BACU002117/1-504 GWHRCRLRHR LGEEPCQPPE RAFRTLPSGS GPGQVAAGRA LCSR--PGRR 551 600 ENSP00000467494/1-466 -PGNEASREL ESYC ENSTTRP00000013549/1-466 -PGGEASHVL ESYC ENSBTAP00000007271/1-466 -PGGEANHVL ESYC bmy_06566T0/1-520 -PWTDMAHSR ---- BACU002117/1-504 RPRSVLEDTP RSWG