KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:35 2014 Check: 00 .. Name: ENSTTRP00000002642/1-471 Len: 563 Check: 4225 Weight: 1.00 Name: bmy_19458T0/1-474 Len: 563 Check: 97 Weight: 1.00 Name: BACU008046/1-410 Len: 563 Check: 6663 Weight: 1.00 Name: ENSP00000378292/1-452 Len: 563 Check: 6469 Weight: 1.00 Name: ENSBTAP00000007288/1-422 Len: 563 Check: 6505 Weight: 1.00 // 1 50 ENSTTRP00000002642/1-471 MSCHFA---- ---------- ----WRPPEG AWAGWAAPGP ------LTAA bmy_19458T0/1-474 MAFPCCIVGF GNLNSCEMTQ ASSPW-PGTS GWSNYRAPEP GFSSGSLTGC BACU008046/1-410 MACRCCIVGF GNLNSCEVTQ ASSPW-PGTS GWSNYRAPEP GFSSGSLTGC ENSP00000378292/1-452 MACRSCVVGF SSLSSCEVTP VGSPR-PGTS GWDSCRAPGP GFSSRSLTGC ENSBTAP00000007288/1-422 MACRSCVVGF SSLSSCEVTP AGSPR-PATA GWSSCGPPEP GLSSHSLTGC 51 100 ENSTTRP00000002642/1-471 LP-------- ---------- ---------- ---------- --------LS bmy_19458T0/1-474 LTASTIPKVT VNPSLLVPLD LKVDPAIQQQ KSQKKEEMKV LNDKFASLIG BACU008046/1-410 LTASTIPKVT VNPSLLVPLD LKVDPAIQQQ KSQKKEEMKV LNDKFASLIG ENSP00000378292/1-452 WSAGTISKVT VNPGLLVPLD VKLDPAVQQL KNQEKEEMKA LNDKFASLIG ENSBTAP00000007288/1-422 WTAGTVSKVT VNPSLLVPLD LKVDPAIQQQ KNNEKEEMKV LNDKFASLIG 101 150 ENSTTRP00000002642/1-471 QVRALEHRNQ LLETRWRFLQ SRDSAAFDLG HLYEEHQGRL REKLREVNQE bmy_19458T0/1-474 KVQALEQRNQ LLETRWRFLQ SRDAGACDFG HLYEEYQGRL QEELRKVNQE BACU008046/1-410 KVQALEQRNQ LLETHWHFLR SRDLAACDLG HLYEEYQDRL QEELRKVNQE ENSP00000378292/1-452 KVQALEQRNQ LLETRWSFLQ GQDSAIFDLG HLYEEYQGRL QEELRKVSQE ENSBTAP00000007288/1-422 KVQALEQRNQ LLETRWHFLQ SQDSATFDLG HLYEEYQGRL QEELRKVSKE 151 200 ENSTTRP00000002642/1-471 GGQLETKLRQ ELETVKAFQI RYEDEISKRT DMEFTFAQLK KVASPACPGG bmy_19458T0/1-474 GGQLEAKLLQ ELAMVQKFQI RYEDEISKRM DMEFTSVQLK K--------- BACU008046/1-410 GAQLEAKLLQ ELAMVQKFQI RYEDEVSKRT DMEFTAVQLK K--------- ENSP00000378292/1-452 RGQLEANLLQ VLEKVEEFRI RYEDEISKRT DMEFTFVQLK K--------- ENSBTAP00000007288/1-422 RGQLEANLLQ VLEKVEDFRI RYEDEISKRT DMEFTFVQLK K--------- 201 250 ENSTTRP00000002642/1-471 SFLMDTLPSF AQDPKQSPQR ESQDQARDMN LSPPFSFCQA LSQVSSGITP bmy_19458T0/1-474 ---------- ---------- ---------- ---------- ---------- BACU008046/1-410 ---------- ---------- ---------- ---------- ---------- ENSP00000378292/1-452 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007288/1-422 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000002642/1-471 LTQEATPYPT PALGPSAPSP IIHSCSHPQD VDAECLQRTG LENKLKGLKS bmy_19458T0/1-474 ---------- ---------- ---------D LNAERLRQTQ LETKLKGLKS BACU008046/1-410 ---------- ---------- ---------D LNAERLRQTQ LETKLKGLKS ENSP00000378292/1-452 ---------- ---------- ---------D LDAECLHRTE LETKLKSLES ENSBTAP00000007288/1-422 ---------- ---------- ---------D LDAECLRRTE LETKLKGLQS 301 350 ENSTTRP00000002642/1-471 FVVLMKSIYE QELKDLAAQV KDVSVTVSMD SRCHVDLSGI MEEVMAQYDA bmy_19458T0/1-474 FVVLMKSIYE QELKDLAAQV KDVSVTVGMD SRCHIDLSGI VEKVMAQYGA BACU008046/1-410 FAVMMKSIYE QELKDLAAQV KDVSVTVGMG SRCHTDLSGI VEKVMAQYGA ENSP00000378292/1-452 FVELMKTIYE QELKDLAAQV KDVSVTVGMD SRCHIDLSGI VEEVKAQYDA ENSBTAP00000007288/1-422 FVELMKSIYE QELKDLAAQL KDVSVTVGMD SRCHIDLSGI VEEVKAQYDA 351 400 ENSTTRP00000002642/1-471 VAARSLEEGK AYSQSQVEER AACSAEAGNS LQRSRGEIAD LKVHIQKLRS bmy_19458T0/1-474 VMARSMEEAK AYSRSQLEER AACSAESGNS LQRSRSKITD LNVHIQKLRS BACU008046/1-410 VVARSLEEAK AYSRSQ---- ---------- ---------- ---------- ENSP00000378292/1-452 VAARSLEEAE AYSRSQLEEQ AARSAEYGSS LQSSRSEIAD LNVRIQKLRS ENSBTAP00000007288/1-422 VAARSLEEAE AYSRSQLEER AACSAEFENS LQSSRSEIAD LNVRIQKLRS 401 450 ENSTTRP00000002642/1-471 QILSTKSHCM KLEENIKAAE SHGELTLQDA KAKLAQLEAA LQQAKQDMAR bmy_19458T0/1-474 QILSIKSHCL KLKENIKAAE NQGELAFQDA KAKLAQLKDA LQQAKKDMAR BACU008046/1-410 --------CL KLEENIKAAE NQGELAFQDA KAKLAQLEAA LQQAKKDMAR ENSP00000378292/1-452 QILSVKSHCL KLEENIKTAE EQGELAFQDA KTKLAQLEAA LQQAKQDMAR ENSBTAP00000007288/1-422 QILSIKSHCL KLEENIKVAE EQGELAFQDA KAKLAQLEDA LQQAKKDMAR 451 500 ENSTTRP00000002642/1-471 QLRDYQELMS TKLALDVEIA TYHKLVEGEE SRMDLPSTTM IRSMQSSSRT bmy_19458T0/1-474 QLRDYQELMN TKLALDIEIA TYRKLVEGEE SRMDLPSATV ISCMQSRSRT BACU008046/1-410 QLCDYQELMN TKLVLDIEIA TYGKLVEGEE SRMDLPAATV ISCMQSRSRT ENSP00000378292/1-452 QLRKYQELMN VKLALDIEIA TYRKLVEGEE GRMDSPSATV VSAVQSRCKT ENSBTAP00000007288/1-422 QLREYQELMN TKLALDIEIA TYRKLMEGEE SRMDMPSATV VSAVQARCRT 501 550 ENSTTRP00000002642/1-471 ---------- ---------- --AASKHGLS RAPSWKKKTR GDLVIKITET bmy_19458T0/1-474 VIILNGSQTS SPYPAPPLMF PVAASKYGLS RFPSRKKKNR QHPVIKITET BACU008046/1-410 ---------- ---------- --AASKYGLS RSPSRKKKNR EHPVIKITET ENSP00000378292/1-452 ---------- ---------- --AASRSGLS KAPSRKKKGS KGPVIKITEM ENSBTAP00000007288/1-422 ---------- ---------- ---------- -APTLP---- -HPLCSL--- 551 600 ENSTTRP00000002642/1-471 SEEFLSQESE LSQ bmy_19458T0/1-474 SEEFLSQESE VSQ BACU008046/1-410 SEEFLSQESE VSQ ENSP00000378292/1-452 SEKYFSQESE VSE ENSBTAP00000007288/1-422 ---------- ---