KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:38 2014 Check: 00 .. Name: bmy_10404T0/1-730 Len: 1094 Check: 8714 Weight: 1.00 Name: ENSP00000276480/1-1047 Len: 1094 Check: 4712 Weight: 1.00 Name: ENSBTAP00000007308/1-1022 Len: 1094 Check: 7786 Weight: 1.00 Name: BACU002343/1-1066 Len: 1094 Check: 3785 Weight: 1.00 Name: ENSTTRP00000014582/1-1052 Len: 1094 Check: 7033 Weight: 1.00 // 1 50 bmy_10404T0/1-730 ---------- ---------M FLIRLRYCSA AHDCSTGKKR RAGEQALGVP ENSP00000276480/1-1047 MDAEAEDKTL RTRSKGTEVP MDSLIQELSV AYDCSMAKKR TAEDQALGVP ENSBTAP00000007308/1-1022 ---------- ---------- --------SA AHDCTTAKKR RAGEQALGVP BACU002343/1-1066 ---------- ---------M FLIRLRYCSA AHDCSTAKKR RAGEQALGVP ENSTTRP00000014582/1-1052 MDAEAEDKTL RTRAKGTKXX XXXXXXXXXA AHDCSTAKKR RAGEQALGVP 51 100 bmy_10404T0/1-730 VNKRKSLLMK PRHYSPSADC EEGRAERTAE ALGQDGPPET HHHPGA-EIM ENSP00000276480/1-1047 VNKRKSLLMK PRHYSPKADC QEDRSDRTED ----DGPLET HGHSTAEEIM ENSBTAP00000007308/1-1022 VNKRKSLLMK PRHYSPSVDC EEGRADQV-E AEGQDDRLET NHHPSTEEIM BACU002343/1-1066 INKRKSLLMK PRHYSPSQDC EEGRAERTAD ALGQDGPPET HHHPGA-EIM ENSTTRP00000014582/1-1052 VNKRKSLLMK PRHYSPSVDR EEGRAERTAE ALGQDGAPET HHHPGAEEIM 101 150 bmy_10404T0/1-730 IKPMEEKLPS TAQENSDGKE DRYGRYQELV VKSLMHLGKF EKNASVQTIS ENSP00000276480/1-1047 IKPMDESLLS TAQENSSRKE DRYSCYQELM VKSLMHLGKF EKNVSVQTVS ENSBTAP00000007308/1-1022 IKPMDEKFHS TAQEKSDGKE DRYGCYQELV VKSLMHLGTL EKSASAQTII BACU002343/1-1066 IKPMEEKLHS TAQENSDGKE DRYGLYQELV VKSLMHLGKF EKNASVQTIS ENSTTRP00000014582/1-1052 IKPMEEKLHS TAQENSDGKE DRYGRYQELV VKSLMHLGKF ENNASVQTIS 151 200 bmy_10404T0/1-730 ENLNDSGIQS LKAEGDEVDE CFMVHSDDGK DKIDDSQLRF CSSDDNESNS ENSP00000276480/1-1047 ENLNDSGIQS LKAESDEADE CFLIHSDDGR DKIDDSQPPF CSSDDNESNS ENSBTAP00000007308/1-1022 ENLNDSGIQS LKAEGDEVDE CFMVPSDDGK DKTDNSRLRF SPSSDSDSNS BACU002343/1-1066 ENLNDSGIQS LKAEGDEVDE CFMVHSDDGK DNIDDSQLRF CSSDDNESNS ENSTTRP00000014582/1-1052 ENLNDSGIQS LKAEGDEVDE CFMVHSDDGK DKIDDSQLPF CSSDDNESNS 201 250 bmy_10404T0/1-730 ESAENGWDSD SNFSEETKPQ SIPKYVLVDD RKDLLEVPEI KTEGDKFISC ENSP00000276480/1-1047 ESAENGWDSG SNFSEETKPP RVPKYVLTDH KKDLLEVPEI KTEGDKFIPC ENSBTAP00000007308/1-1022 ESAENGWDSG SSFSEEAKPP RVPKYVLVDD RKDLLEVPEI KTEGNKFISC BACU002343/1-1066 ESAENGWDSD SNFSEETKPQ SVPKYVLVDD RKDLLEVPEI KTEGDKFISC ENSTTRP00000014582/1-1052 ESAENGWDSD SNFSEETKPQ RVPKYVLVDD RKDLLEVPEI KTEGDKFISC 251 300 bmy_10404T0/1-730 ESTCDSETER RDPQNAPVDP SDGQAQPSFP GSKEDDRSHG CPAAGVEEAA ENSP00000276480/1-1047 ENRCDSETER KDPQNALAEP LDGNAQPSFP DVEEEDSE-- SLAVMTEEGS ENSBTAP00000007308/1-1022 KNVCDSETER KDPQNTPLDP SDGPAQPSFP GSEDRGHGRG CPAAGTEEAT BACU002343/1-1066 ESTCDSETER RDPQNVPVDP SDGQAQPSFP GSKEEDRSHG CPAAGVEEAA ENSTTRP00000014582/1-1052 KSTCDSETER REPQHAPVDP SDGQAQPSFP GSKEDDHRHG CPAAGVEEAA 301 350 bmy_10404T0/1-730 ALEKAKGNLS LLEQAIALQA ERGCVFHSTY KELDRFLLEH LSGERRQTKV ENSP00000276480/1-1047 DLEKAKGNLS LLEQAIALQA ERGCVFHNTY KELDRFLLEH LAGERRQTKV ENSBTAP00000007308/1-1022 ALEKAKGNLS LLEQAIALQA ERGCVFHNTY KELDRFLLEH LSGERRQTKV BACU002343/1-1066 APEKAKGNLS LLEQAIALQA ERGCVFHSTY KELDRFLLEH LSGERRQTKV ENSTTRP00000014582/1-1052 ALEKTKGNLS LLEQAIALQA ERGCVFHSTY KELDRLLLEH LSGERKQNKV 351 400 bmy_10404T0/1-730 IDVGGRQVFT NKHSPRPEKR ETKCPIPGCD GTGHVTGLYP HHRSLSGCPH ENSP00000276480/1-1047 IDMGGRQIFN NKHSPRPEKR ETKCPIPGCD GTGHVTGLYP HHRSLSGCPH ENSBTAP00000007308/1-1022 IDMGGRQVFP NKHSPRPEKR ETKCPIPGCD GTGHVTGLYP HHRSLSGCPH BACU002343/1-1066 IDVGGRQVFT NKHSPRPEKR ETKCPIPGCD GTGHVTGLYP HHRSLSGCPH ENSTTRP00000014582/1-1052 IDVGGRQVFT SKHSPRPEKR ETKCPIPGCD GTGHVTGLYP HHRSLSGCPH 401 450 bmy_10404T0/1-730 KVRVPLEILA MHENVLKCPT PGCTGRGHVN SNRNTHRSLS GCPIAAAEKL ENSP00000276480/1-1047 KVRVPLEILA MHENVLKCPT PGCTGRGHVN SNRNTHRSLS GCPIAAAEKL ENSBTAP00000007308/1-1022 KVRVPLEILA MHENVLKCPT PGCTGRGHVN SNRNTHRSLS GCPIAAAEKL BACU002343/1-1066 KVRVPLEILA MHENVLKCPT PGCTGRGHVN SNRNTHRSLS GCPIAAAEKL ENSTTRP00000014582/1-1052 KVRVPLEILA MHENVLKCPT PGCTGRGHVN SNRNTHRSLS GCPIAAAEKL 451 500 bmy_10404T0/1-730 AMSQDKSQLD SAKTGQCPDQ GHRTSLVKQI EFNFRSQAII SPRATVSKEQ ENSP00000276480/1-1047 AMSQDKNQLD SPQTGQCPDQ AHRTSLVKQI EFNFPSQAIT SPRATVSKEQ ENSBTAP00000007308/1-1022 AMSQDKSQLD SPKTGQCPEQ GHRTSLVKQI EFNFRSQAIT SPRATVSKEQ BACU002343/1-1066 AMSQDKSQLD SAKTGQCPDQ GHRTSLVKQI EFNFRSQAII SPRATVSKEQ ENSTTRP00000014582/1-1052 AMSQDKSQLD SAKTGQCPEQ GHRTSLVKQI EFNFRSQAII SPRATVSKEQ 501 550 bmy_10404T0/1-730 EKFGKVPFDY ASFDAQVFGK HPLVQTGQGR KTPPFPESKH FSNPGKFPNR ENSP00000276480/1-1047 EKFGKVPFDY ASFDAQVFGK RPLIQTVQGR KTPPFPESKH FPNPVKFPNR ENSBTAP00000007308/1-1022 EKFGKIPFDY ASFDAQVFGK CPLVQT--GR KTPPFPESKH FSSPGKFPPR BACU002343/1-1066 EKFGKVPFDY ASFDAQVFGK HPLVQTGQGR KTPPFPEW-- -----KFPNR ENSTTRP00000014582/1-1052 EKFGKVPFDY ASFDAQVFGK HPLVQTGQGR KTPPFPESKH FSNPGKFPNR 551 600 bmy_10404T0/1-730 LLSAGIHTPS PGRASSHSHG QRGEDTHVAA AAAILNLSTR CREAADILSN ENSP00000276480/1-1047 LPSAGAHTQS PGRASSYSYG QCSEDTHIAA AAAILNLSTR CREATDILSN ENSBTAP00000007308/1-1022 LPSAGAHTQS PGRASSYGSG QRSEDTHIAA AAAILNLSTR CREAADILAN BACU002343/1-1066 LLSAGICTPS PGRASSHSHG QRGEDTHVAA AAAILNLSTR CREAADILSN ENSTTRP00000014582/1-1052 LLSAGAHTPS PGRASSHSHG QRGEDTHVAA AAAILNLSTR CREAADILSN 601 650 bmy_10404T0/1-730 KPQSLPAK-- ------KNTL PQKYKENAKL SK-------- ---------- ENSP00000276480/1-1047 KPQSLHAKGA EIEVDENGTL DLSMKKNRIL DKSAPLTSSN TSIPTPSSSP ENSBTAP00000007308/1-1022 RQQGLHAKGA EIEVDENGTL DLSMKKARIL DKVAPLTSTN PSVPTASSSP BACU002343/1-1066 KPQSLPAKGA EIEVDENGTL DLSMKKNRIL DKAAPLTSTN PSVPTASSSP ENSTTRP00000014582/1-1052 KPQSLPAKGA EIEVDENGTL DLSMKKNRIL DKAAPLTSTN PSVPTASSSP 651 700 bmy_10404T0/1-730 ---------- ---------- ---------- ---------- ---------- ENSP00000276480/1-1047 FKTSSILVNA AFYQALCDQE GWDTPINYSK THGKTEEEKE KDPVSSLENL ENSBTAP00000007308/1-1022 FKTSSLLVNA AFYQALCDHE GWDTPINYSK AHGKTEEEKE KDPVSSLENL BACU002343/1-1066 FKTSSLLVNA AFYQALCDHE GWDTPINYSK AHGKTEEEKE KDPVSSLENL ENSTTRP00000014582/1-1052 FKTSSLLVNA AFYQALCDHE GWNTPINYSK AHGKTEEEKE KDPVSSLENL 701 750 bmy_10404T0/1-730 ---------- ---------- ---------- ---------- ---------- ENSP00000276480/1-1047 EEKKFPGEAS IPSPKPKLHA RDLKKELITC PTPGCDGSGH VTGNYASHRS ENSBTAP00000007308/1-1022 EEKKFSGEAS IPSPKPKLHT RDLKKELITC PTPGCDGSGH VTGNYASHRS BACU002343/1-1066 EEKKFPGEAS IPSPKPKLHA RDLKKELITC PTPGCDGSGH VTGNYASHRS ENSTTRP00000014582/1-1052 EEKKFPGEAS IPSPKPKLHA RDLKKELITC PTPGCDGSGH VTGNYASHRS 751 800 bmy_10404T0/1-730 ---------- ---------- ---------- ----ITGRNY GYSDIQLSPR ENSP00000276480/1-1047 VSGCPLADKT LKSLMAANSQ ELKCPTPGCD GSGHVTGNYA SHRSLSGCPR ENSBTAP00000007308/1-1022 VSGCPLADKT LKSLMAANSQ ELKCPTPGCD GSGHVTGNYA SHRSLSGCPR BACU002343/1-1066 VSGCPLADKT LKSLMAANSQ ELKCPTPGCD GSGHVTGNYA SHRSLSGCPR ENSTTRP00000014582/1-1052 VSGCPLADKT LKSLMAANSQ ELKCPTPGCD GSGHVTGNYA SHRSLSGCPR 801 850 bmy_10404T0/1-730 ----GEQITD HVQEHD---- ---------- ---------- -------LVK ENSP00000276480/1-1047 ARKGGVKMTP TKEEKEDPEL KCPVIGCDGQ GHISGKYTSH RTASGCPLAA ENSBTAP00000007308/1-1022 ARKGGVKVTP TKEEKEDPEL KCPVIGCDGQ GHISGKYTSH RTASGCPLAA BACU002343/1-1066 ARKGGVKVTP TKEEKEDPEL KCPVIGCDGQ GHISGKYTSH RTASGCPLAA ENSTTRP00000014582/1-1052 ARKGGVKVTP TKEEKEDPEL KCPVIGCDGQ GHISGKYTSH RTASGCPLAA 851 900 bmy_10404T0/1-730 IKPKDTNLEI AFIHWSELIQ IVFHAV---- ---------- --------CR ENSP00000276480/1-1047 KRQKENPLNG ASLSWKLNKQ ELPHCPLPGC NGLGHVNNVF VTHRSLSGCP ENSBTAP00000007308/1-1022 KRQKENPLNG APLSWKLNKQ ELPHCPLPGC NGLGHVNNVF VTHRSLSGCP BACU002343/1-1066 KRQKENPLNG APLSWKLNKQ ELPHCPLPGC NGLGHVNNVF VTHRSLSGCP ENSTTRP00000014582/1-1052 KRQKENPLNG APLSWKLNKQ ELPHCPLPGC NGLGHVNNVF VTHRSLSGCP 901 950 bmy_10404T0/1-730 LTADSRFIGR PESVIFKIPT LLEDKGVEAD ---------F KDAREHLLKT ENSP00000276480/1-1047 LNAQVIKKGK VSEELMTI-K LKATGGIESD EEIRHLDEEI KELNESNLKI ENSBTAP00000007308/1-1022 LNAQAIKKGK VSEELMTI-K VKASGGIEND EEIRHLDEEI KELNESNLKI BACU002343/1-1066 LNAQAIKKGK VSEELMTI-K VKASGGIESD EEIRHLDEEI KELNESNLKI ENSTTRP00000014582/1-1052 LNAQAIKKGK VSEELMTI-K VKASGGIESD EEIRHLDEEI KELNESNLKI 951 1000 bmy_10404T0/1-730 VKD------- ---------- ---------- ---------- ---------- ENSP00000276480/1-1047 EADMMKLQTQ ITSMESNLKT IEEENKLIEQ NNESLLKELA GLSQALISSL ENSBTAP00000007308/1-1022 EADMMKLQTQ ITSMESNLKT IEEENKLIEQ NNESLLKELA GLSQALISSL BACU002343/1-1066 EADMMKLQTQ ITSMESNLKT IEEENKLIEQ SNESLLKGLA GLSQALISSL ENSTTRP00000014582/1-1052 EADMMKLQTQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1001 1050 bmy_10404T0/1-730 -DRHIPKCSP PSKVSQPEHL PTQH------ ---------- ---------- ENSP00000276480/1-1047 ADIQLPQMGP ISEQNFEAYV NTLTDMYSNL ERDYSPECKA LLESIKQ--- ENSBTAP00000007308/1-1022 ADIQLPQMGP ISEQNFEAYV NTLTDMYSNL ERDYSPECKA LLESIKQ--- BACU002343/1-1066 ADIQLPQVGP ISEQNFEAYV NTLTDMYSNR ERGYSPECKA LLESIKQAGP ENSTTRP00000014582/1-1052 XXXXXXXXGP ISEQNFEAYV NTLTDMYSNL ERDYSPECKA LLESIKQ--- 1051 1100 bmy_10404T0/1-730 ---------- ---------- ---------- ---------- ---- ENSP00000276480/1-1047 ---------- ---------- ---------- -------AVK GIHV ENSBTAP00000007308/1-1022 ---------- ---------- ---------- -------AVK GIHV BACU002343/1-1066 ISEQNFEAYV NTLTDMYSNR ERGYSPECKA LLESIKQAVK GIHV ENSTTRP00000014582/1-1052 ---------- ---------- ---------- --------VK GIHV