KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:38 2014 Check: 00 .. Name: BACU017965/1-318 Len: 357 Check: 8258 Weight: 1.00 Name: ENSP00000249806/1-311 Len: 357 Check: 4952 Weight: 1.00 Name: ENSBTAP00000007315/1-311 Len: 357 Check: 5036 Weight: 1.00 Name: bmy_20490T0/1-350 Len: 357 Check: 9614 Weight: 1.00 Name: ENSTTRP00000015188/1-222 Len: 357 Check: 5913 Weight: 1.00 // 1 50 BACU017965/1-318 ---------- ---------- ---------- ---------M CASSCSQISV ENSP00000249806/1-311 ---------- ---------- ---------- ---------M EATRRRQ--- ENSBTAP00000007315/1-311 ---------- ---------- ---------- --------ME AAARRR---- bmy_20490T0/1-350 ALPPVGTRFG YLLSRQLGQP SPSPAPGSGA EGPAGGAAME AAARKRQ--- ENSTTRP00000015188/1-222 ---------- ---------- ---------- --------ME AAARRRQ--- 51 100 BACU017965/1-318 AHLRGEASHG RREELTPFVC PFPRHSSVKA DEAASTAPFH LDLWFYFTLQ ENSP00000249806/1-311 -HLGATGGPG AQLGASFLQA ---RHGSVSA DEAARTAPFH LDLWFYFTLQ ENSBTAP00000007315/1-311 -HPGAAGGPG AQPGASFLQA ---RHSSVKA DEAAGTAPFH LDLWFYFTLQ bmy_20490T0/1-350 -HPGAAGGPG AQPGASFLQA ---RHSSVKA DEAASTAPFH LDLWFYFTLQ ENSTTRP00000015188/1-222 -HPGAAGGPG AQPGASFLQA ---RHSSVKA DEAASTAPFH LDLWFYFTLQ 101 150 BACU017965/1-318 NWVLDFGRPI AMLVFPLEWF PLNKPSVGDY FHMAYNIITP FLLLKLIERS ENSP00000249806/1-311 NWVLDFGRPI AMLVFPLEWF PLNKPSVGDY FHMAYNVITP FLLLKLIERS ENSBTAP00000007315/1-311 NWVLDFGRPI AMLVFPLEWF PLNKPSVGDY FHMAYNIITP FLLLQLIERC bmy_20490T0/1-350 NWVLDFGRPI AMLVFPLEWF PLNKPSVGDY FHMAYNIITP FLLLKLIERS ENSTTRP00000015188/1-222 NWILDFGRPI AMLVFPLEWF PLNKPSVGDY FHMAYNIITP FLLLKLIERS 151 200 BACU017965/1-318 PRTLPRSMIY VSIITFIMGA SIHLVGDSVN HRLIFSGYQN HLSVRENPII ENSP00000249806/1-311 PRTLPRSITY VSIIIFIMGA SIHLVGDSVN HRLLFSGYQH HLSVRENPII ENSBTAP00000007315/1-311 PRTLPRSLIY VSIITFIMGA SIHLVGDSVN HRLIFSGYQN HLSVRENPII bmy_20490T0/1-350 PRTLPRSMIY VSIITFIMGA SIHLVGDSVN HRLIFSGYQN HLSVRENPII ENSTTRP00000015188/1-222 PRTLPRSMIY VSIITFIMGA SIHLVGDSVN HRLIFSGYQN HLSVRENPII 201 250 BACU017965/1-318 KNLKPETLID SFELLYYYDE YLGHSMWYIP FFLILFMYFS GCFTPTKAEN ENSP00000249806/1-311 KNLKPETLID SFELLYYYDE YLGHCMWYIP FFLILFMYFS GCFTASKAES ENSBTAP00000007315/1-311 KNLKPETLID SFELLYYYDE YLGHSMWYIP FFLILFMYFS SCFTPTKAES bmy_20490T0/1-350 KNLKPETLID SFELLYYYDE YLGHSMWYIP FFLILFMYFS GCFTPTKAES ENSTTRP00000015188/1-222 KNLKPETLID SFELLYYYDE YLGHSMWYIP FFLILFMYFS GCFTPTKAES 251 300 BACU017965/1-318 SMPGAALLLV VPSGLYYWYL VTEGQIFILF IFTFFAMLAL VLHQKRKRLF ENSP00000249806/1-311 LIPGPALLLV APSGLYYWYL VTEGQIFILF IFTFFAMLAL VLHQKRKRLF ENSBTAP00000007315/1-311 SMPGAALLLV VPSGLYYWYL VTEGQIFILF IFTSFAMLAL VLHQKRKRLF bmy_20490T0/1-350 SMPGAALLLV VPSGLYYWYL VTEGQIFILF IFTFFAMLAL VLHQKRKRLF ENSTTRP00000015188/1-222 SMPGPALPLV VPSGLYY--- ---------- ---------- ---------- 301 350 BACU017965/1-318 LDSNGLFLFS SFALTLLLVA LWVAWLWNDP VLRKKYPGVI YVPEPWAFYT ENSP00000249806/1-311 LDSNGLFLFS SFALTLLLVA LWVAWLWNDP VLRKKYPGVI YVPEPWAFYT ENSBTAP00000007315/1-311 LDSNGLFLFY SFALTLLLVA LWVAWLWNDP VLRKKYPGVI YVPEPWAFYT bmy_20490T0/1-350 LDSNGLFLFS SFALTLLLVA LWVAWLWNDP VLRKKYPGVI YVPEPWAFYT ENSTTRP00000015188/1-222 ---------- ---------- ---------- ---------- ---------- 351 400 BACU017965/1-318 LHVSSRH ENSP00000249806/1-311 LHVSSRH ENSBTAP00000007315/1-311 LHVSSQH bmy_20490T0/1-350 LHVSSRH ENSTTRP00000015188/1-222 -------