KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:40 2014 Check: 00 .. Name: ENSP00000308193/1-164 Len: 171 Check: 5820 Weight: 1.00 Name: ENSBTAP00000007327/1-165 Len: 171 Check: 113 Weight: 1.00 Name: ENSTTRP00000016048/1-164 Len: 171 Check: 5876 Weight: 1.00 Name: bmy_10232T0/1-171 Len: 171 Check: 4731 Weight: 1.00 Name: BACU003483/1-128 Len: 171 Check: 8137 Weight: 1.00 // 1 50 ENSP00000308193/1-164 MESGDEAAIE RHRVHLRSAT LRDAVPATLH LLPCEVAVDG PAPVGRFFTP ENSBTAP00000007327/1-165 MENSYEETID KRRVHLRPDT LRDPAPASLH LLPCEVPVNR PTPVGRFFTP ENSTTRP00000016048/1-164 MESSDGEAVD KRRVHLRPVT LRDPAPILLH LLPCEVLVNR PAPVGLFFTP bmy_10232T0/1-171 MESSDGEAID KRRVHLRPVT LRDPAPVLLH LLPCEVLVNR PAPVGLFFTP BACU003483/1-128 MESSDGEAID KRRVHLRPVT LRDPAPVLLH LLPCEFLVNR PAPVGLFFTP 51 100 ENSP00000308193/1-164 AIRQGPEGLE VSFRGRCLRG EEVAVPPGLV GYVMVTEEKK VSMGKPDPLR ENSBTAP00000007327/1-165 AIRMGRDGLE ASFRGRSLRG EEVVVPPGFV GYVVTEEKAE VLMGKQD--- ENSTTRP00000016048/1-164 AIRQGPDGLE VSFRGRSLRG EEVVVPPGLV GYVMTEEKGE VLLGKQDFSE bmy_10232T0/1-171 AIRQGPDGLE VSFRGRSLRG EEVVVPPGLV GYVMTEEKGE VLLGKQDFSE BACU003483/1-128 AIRQGPDGLE VSFRGRSLRG EEVVVPPGLV GYVMTEEKGE VLLGKQDFSE 101 150 ENSP00000308193/1-164 DSGTDDQEE- ------EPLE RDFDRFIGAT ANFSRFTLWG LETIPGPDAK ENSBTAP00000007327/1-165 ---DHERQEQ ELLEPPEALE RDCDRFMGAT ASFSSFTVWG LESIPGPDAK ENSTTRP00000016048/1-164 GLEDDEQEE- ------EALE RDFXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10232T0/1-171 GLQDDEQEEQ ELVEPAEALE RDFDRFIGAT ASFSSFTLWG LETIPGPDAR BACU003483/1-128 GLQDDEQEEQ ELVEPPEALE RD-------- -----FVSTG L--------- 151 200 ENSP00000308193/1-164 VRGALTWPSL AAAIHAQVPE D ENSBTAP00000007327/1-165 LRGALSWPSL AAAIHAQVPE D ENSTTRP00000016048/1-164 XXXXXXXXXX XXXIHAQVPE D bmy_10232T0/1-171 VRGALTWPSL AAAIHAQVPE D BACU003483/1-128 ---------- ---------- -