KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:44 2014 Check: 00 .. Name: bmy_08352T0/1-242 Len: 369 Check: 9805 Weight: 1.00 Name: ENSP00000262219/1-357 Len: 369 Check: 1205 Weight: 1.00 Name: ENSBTAP00000007336/1-323 Len: 369 Check: 6914 Weight: 1.00 Name: BACU013226/1-328 Len: 369 Check: 4556 Weight: 1.00 Name: ENSTTRP00000005177/1-353 Len: 369 Check: 2012 Weight: 1.00 // 1 50 bmy_08352T0/1-242 LTKITSIL-- ---------- ---------- ---------- ---------- ENSP00000262219/1-357 MGNRHSQSYT LSEGSQQLPK GDSQPSTVVQ PLSHPSRNGE PEAPQPAKAS ENSBTAP00000007336/1-323 MGNIRAKGKS ---------- ---------- ---------- ---HQGLDAH BACU013226/1-328 MKYRTTISEK KKMG------ ---------- ---------- ---NRHAKER ENSTTRP00000005177/1-353 MGNRHSQSYS LSEGRQPLYE GQAQPLAAVQ PLSHPSGSGE PEFHQPAKEK 51 100 bmy_08352T0/1-242 ----FLAHCD FVSFS--CTS -GTDEATIIE ILSSRTSNER QQIKQKYKTT ENSP00000262219/1-357 SPQGFDVDRD AKKLNKACKG MGTNEAAIIE ILSGRTSDER QQIKQKYKAT ENSBTAP00000007336/1-323 SHQRFDADRD AKKLNKACKG MGTDEAAIIE ILSSRTSHER QQIKRKYKTT BACU013226/1-328 SHQGFDVDRD AKKLNKACKG MGTDEATIIE ILSSRTSNER QQIKQKYKIT ENSTTRP00000005177/1-353 VLQGFDADRD AKKLNKACKG MATDEATIIQ ILSS-TSNER QQIKYD---T 101 150 bmy_08352T0/1-242 YGKDLEEVLK SELSGNFEKT ALALLDHPSE YAARQLKKAM KGLGTNEAVL ENSP00000262219/1-357 YGKELEEVLK SELSGNFEKT ALALLDRPSE YAARQLQKAM KGLGTDESVL ENSBTAP00000007336/1-323 YGKDLEEVLK SELSGNFEKT ALALLDHPEE YAARQLQKAM KGLGTNEAVL BACU013226/1-328 YGKDLEEVLK SELSGNFEKT ALALLDHPSE YAARQLKKAM KGLGTNEAVL ENSTTRP00000005177/1-353 YGKDLEEVLK KELSGYFEKT ALALLEHPSE YAARQLQKAM KGLGTNEAVL 151 200 bmy_08352T0/1-242 IEVLCTRTNK ---------- ---------- ---------- --------AN ENSP00000262219/1-357 IEVLCTRTNK EIIAIKEAYQ RLFDRSLESD VKGDTSGNLK KILVSLLQAN ENSBTAP00000007336/1-323 IEVLCTRTNK EIIAIKEAYQ RLFGKSLESD VKGDTSGSLK TILVSLLQAN BACU013226/1-328 IEVLCTRTNK EIIAIKEAYQ RLFDRSLESD VKGDTSGSLK KILVSLLQAN ENSTTRP00000005177/1-353 IEVLCTKTNK EIIAIKEAYQ RLFDRSLESD VKGDTSGSLK KILVSLLQAN 201 250 bmy_08352T0/1-242 RDEGDNVDKD LAGQDAKDLY DAGEGRWGTD ELTFNEVLAK RNHKQLRATF ENSP00000262219/1-357 RNEGDDVDKD LAGQDAKDLY DAGEGRWGTD ELAFNEVLAK RSYKQLRATF ENSBTAP00000007336/1-323 RDEGDNVDKD LAGQDAKELY DAGEGRWGTD ELAFNELLAK RSHKQLQATF BACU013226/1-328 RDEGDNVDKD LAGQDAKDLY DAGEGRWGTE ESTFNEVLAK RNHKQLRATF ENSTTRP00000005177/1-353 RDEGDNVDKD LAGQDAKDLY DAGEDRWGTD ELTFNEVLAK RNHKQLRATF 251 300 bmy_08352T0/1-242 QAYQVLQEQP ADTLSQLCSF RGSLGHSTKC EHLTFSLPLS CPVRSARDLQ ENSP00000262219/1-357 QAYQILIGKD IEEAIE-EET SGDLQKA--- -YLTL----- --VRCAQDCE ENSBTAP00000007336/1-323 QAYQTLIGKD IEEAIE-AET SGDLQKA--- -YLTL----- --VRSARDLQ BACU013226/1-328 QAYQVLIGKD IEEAIE-AET SGDLQKA--- -YLTL----- --VRSARDLH ENSTTRP00000005177/1-353 QAYQVLIGKD IEEAIE-AET SGDLQKA--- -YLTL----- --VRSARDLE 301 350 bmy_08352T0/1-242 GYFADCLYKA MKGAGTDEET LIDIIVTQA- ---------- ---------- ENSP00000262219/1-357 DYFAERLYKS MKGAGTDEET LIRIVVTRAE VDLQGIKAKF QEKYQKSLSD ENSBTAP00000007336/1-323 GYFADRLYKS MKGAGTDEET LIDIIVTRAE VDVQGIKARF -EKYQKSLSD BACU013226/1-328 GYFADCLYKA MKGAGTDEET LIDIIVTQAE VNLQGIKAKF QEKYQKSLSD ENSTTRP00000005177/1-353 GYFADCLYKA MKGAGTDEET LIDIIVTQAE VDLQGIKAKF QEKYQKSLSD 351 400 bmy_08352T0/1-242 ---------- --------- ENSP00000262219/1-357 MVRSDTSGDF RKLLVALLH ENSBTAP00000007336/1-323 MVRSDTSGDF QKLLVALLH BACU013226/1-328 MVRSDTSGDF QKLLVALLH ENSTTRP00000005177/1-353 MVRSDTSGDF QKLLVALLH