KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:47 2014 Check: 00 .. Name: ENSP00000290846/1-421 Len: 570 Check: 7517 Weight: 1.00 Name: ENSBTAP00000007346/1-417 Len: 570 Check: 295 Weight: 1.00 Name: bmy_04224T0/1-462 Len: 570 Check: 2103 Weight: 1.00 Name: BACU013482/1-449 Len: 570 Check: 3318 Weight: 1.00 Name: ENSTTRP00000003915/1-421 Len: 570 Check: 9282 Weight: 1.00 // 1 50 ENSP00000290846/1-421 ---------- ------MQAL RHVVCALS-- -GGVDSAVAA LLLRRR---- ENSBTAP00000007346/1-417 ---------- ------MQVA RHVVCAVS-- -GGVDSAVAA LLLRRR---- bmy_04224T0/1-462 MAAASALSLG SPDLCGHSSL RGGACPYDTR HGRQATLISX TLFNLSFAPP BACU013482/1-449 ---------- ------MQGA RHVVCAVS-- -GGVDSAVAA LLLRRR---- ENSTTRP00000003915/1-421 ---------- ------MQGA RHVVCAVS-- -GGVDSAVAA LLLRRR---- 51 100 ENSP00000290846/1-421 -GYQVTGVFM KNWDSLDEHG VCTADKDCED AYRVCQILDI PFHQVSYVKE ENSBTAP00000007346/1-417 -GYQVTGVFM KNWDSLDEHG VCTADRDCED AYRVCRILDI PFRQVSYAKE bmy_04224T0/1-462 PGYQVTGVFM KNWDSLDEHG VCTADKDCED AYRVCQILDI PFHQVSYVKE BACU013482/1-449 -GYQVTGVFM KNWDSLDEHG VCTADKDCED AYRVCQILDI PFHQVSYVKE ENSTTRP00000003915/1-421 -GYQVTGVFM KNWDSLDEHG VCTADKDCED AYRVCQILDI PFHQVSYVKE 101 150 ENSP00000290846/1-421 YWNDVFSDFL NEYEKGRTPN PDIVCNKHIK FSCFFHYAVD NLGADAIATG ENSBTAP00000007346/1-417 YWNDVFSDFL NEYEKGRTPN PDIVCNKHIK FRCFFNYAVD NLGADAVATG bmy_04224T0/1-462 YWNDVFSDFL NEYEKGRTPN PDIVCNKHIK FSCFFNYAVD NLGADAVATG BACU013482/1-449 YWNDVFSDFL NEYEKGRTPN PDIVCNKHIK FSCFFNYAVD NLGADAVATG ENSTTRP00000003915/1-421 YWNDVFSDFL NEYEKGRTPN PDIVCNKHIK FSCFFNYAVD NLGADAVATG 151 200 ENSP00000290846/1-421 HYARTSLEDE EVFEQKHVKK PEGLFRNRFE VRNAVKLLQA ADSFKDQTFF ENSBTAP00000007346/1-417 HYARTSLEDE EVFQQKHIKR PEGLFRNRFE VRNAVKLLQA ADSFKDQTFF bmy_04224T0/1-462 HYARTSLEDE EVFQQKRIKR PEGLFRNRFE IRNVVKLLQA ADSFKDQTFF BACU013482/1-449 HYARTSLEDE EVFQQKHIKR PEGLFRNRFE IRNVVKLLQA ADSFKDQTFF ENSTTRP00000003915/1-421 HYARTSLEDE EVFQQKHVKR PEGLFRNRFE IRNVVKLLQA ADSFKDQTFF 201 250 ENSP00000290846/1-421 LSQVSQDALR RTIFPLGGLT KEFVKKIAAE NRLHHVLQKK E--------- ENSBTAP00000007346/1-417 LSQVPQEALR RTLFPLGELT KDFVKKIAAE NRLHHVLQKK E--------- bmy_04224T0/1-462 LSQVSQDALR RTLFPLGGLT KDFVKKIAAE NSLHHVLQKK EALYRWPLRT BACU013482/1-449 LSQVSQDALR RTLFPLGGLT KDFVKKIAAE NSLHHVLQKK E--------- ENSTTRP00000003915/1-421 LSQVSQDALR RTLFPLGGLT KDFVKKIAAE NRLHHVLQKK E--------- 251 300 ENSP00000290846/1-421 ---------- ---------- ---------- ---------- ------SMGM ENSBTAP00000007346/1-417 ---------- ---------- ---------- ---------- ------SMGI bmy_04224T0/1-462 REAIPSPLSS LLVSLPARFL AVAGSPGGVQ DPTRPFVSRS ALLSFQSMGI BACU013482/1-449 ---------- ---------- ---------- ---------- ------SMGI ENSTTRP00000003915/1-421 ---------- ---------- ---------- ---------- ------SMGI 301 350 ENSP00000290846/1-421 CFIGKRNFEH FLL------- ---------- ---------- -QYLQPRPGH ENSBTAP00000007346/1-417 CFIGKRNFEN FIL------- ---------- ---------- -EYLQPRPGR bmy_04224T0/1-462 CFVGKRNFEN FIL------- ---------- ---------- -QYLQPRPGK BACU013482/1-449 CFVGKRNFEN FILQVSGFWC KRMQPRFCSG PGSVSNETFV FQYLQPRPGK ENSTTRP00000003915/1-421 CFVGKRNFEN FIL------- ---------- ---------- -QYLQPRPGK 351 400 ENSP00000290846/1-421 FISIEDNKVL GTHKG----- ---------- ---------- ---------- ENSBTAP00000007346/1-417 FISIEDNKVL GTHKG----- ---------- ---------- ---------- bmy_04224T0/1-462 FISIEDNKVL GTHKGEMQPW AAFHPKLLEA WGKFELWEFR RDASRPSGTG BACU013482/1-449 FISIEDNKVL GTHKG----- ---------- ---------- ---------- ENSTTRP00000003915/1-421 FISIEDNKVL GTHKG----- ---------- ---------- ---------- 401 450 ENSP00000290846/1-421 -------WFL YTLGQRANIG GLREPWYVVE KDSVKGDVFV APRTDHPALY ENSBTAP00000007346/1-417 -------WFL YTLGQRANIG GLREPWYVVD KDGAKGDVLV APRTDHPALY bmy_04224T0/1-462 VGGTREGWFL YTLGQRANIG GLREPWYVVE KDGARGDVLV APRTDHPALY BACU013482/1-449 -------WFL YTLGQRAKIG GLREPWYVVE KDSARGDVLV APRTDHPALY ENSTTRP00000003915/1-421 -------WFL YTLGQRANIG GLREPWYVVE KDGVRGDVLV APRTDHPALY 451 500 ENSP00000290846/1-421 RDLLRTSRVH WIAEEPPAAL VRDKMMECHF RFRHQMALVP CVLTLNQDGT ENSBTAP00000007346/1-417 RDLLRTGRVH WIAEEPPAAL VRDKMMECHF RFRHQMALVP CVLTLNQDGT bmy_04224T0/1-462 RDLLRTGRVH WVAEEPPAAL VRDKMMECHF RFRHQMAL-- ---------- BACU013482/1-449 RDLLRTGRVH WVAEEPPAAL VRDKMMECHF RFRHQMALVP CVLTLNQDGT ENSTTRP00000003915/1-421 RDLLRTGRVH WVAEEPPAAL VRDKMMECHF RFRHQMALVP CVLTLNQDGT 501 550 ENSP00000290846/1-421 VWVTAVQAVR ALATGQFAVF YKGDECLGSG KILRLGPSAY TLQKGQRRAG ENSBTAP00000007346/1-417 VWVTAVKAVR ALAPGQFAVF YKGDECLGSG KILRLGPSAY TLQKGQRTSS bmy_04224T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU013482/1-449 VWVTAVKAVR ALALGQFAVF YKGGECLGSG KILRLGPSAY TLQKGRSTPS ENSTTRP00000003915/1-421 VWVTAVKAVR ALALGQFAVF YKGGECLGSG KILRLGPSAY TLQKGRSRPD 551 600 ENSP00000290846/1-421 MATESPSDSP EDGPGLSPLL ENSBTAP00000007346/1-417 VAKEGP---- SDSPGLGPAP bmy_04224T0/1-462 ---------- GD-------- BACU013482/1-449 MAVEGSGSGR GDSPGRGTTL ENSTTRP00000003915/1-421 VTVEGSSIGR GDSPGQGPTL