KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:48 2014 Check: 00 .. Name: ENSBTAP00000007351/1-1320 Len: 1988 Check: 9754 Weight: 1.00 Name: ENSTTRP00000003666/1-1308 Len: 1988 Check: 5422 Weight: 1.00 Name: bmy_17830T0/1-1939 Len: 1988 Check: 7558 Weight: 1.00 Name: BACU018217/1-1311 Len: 1988 Check: 4998 Weight: 1.00 // 1 50 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 MTASELQRDQ GLALPAGQVL TVPTFHPGGH ARQGASQTLE GSGVLPVGMI BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 SQSSFLAGAW DLPPLLAETE RLLTPKPGYG TRVGPSPAPS TPPEEEDLRR BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 RLKYFFMSPC DKFRAKGRKP FKLMLQVVKI LVVTVQLILF GLSNQLAVTF BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 REENTIAFRH LFLLGYSDGA DDTFAAYTRE QLYQAIFHTV DQYLMLPDVS BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 LGRYAYVRGG GGPWANGSAL ALCQCYYHRG HVDPANDTFD IDPMVVTDCI BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 RVDPPERPPV PPSDELSLLD GSTSYKNLTL KFHKLINVTI HFQLKTINLQ BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 SLINNEIPDC YTFSILITFD NKAHSGRIPI SLETQAHIQE CKHPSVFGHG BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 DNSFRLLFDV VVILTCAFSF LLCARSLLRG FLLQNEFVRF MRRQRGKVIS BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 LWERLEFVNG WYILLVTSDV LTISGTIMKI GIEAKNLASY DVCSILLGTS BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 TLLVWVGVIR YLTFFHKYNH PGGAGAEESE LQAYIAQCQD SPTSGKFRRG BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000007351/1-1320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003666/1-1308 ---------- ---------- ---------- ---------- ---------- bmy_17830T0/1-1939 SGSACSLLCC CGRLEAGLAW REGYSLRQLV FGPFKASPHS VWLAQRDLPS BACU018217/1-1311 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000007351/1-1320 ---------- ---------- -----MDAPL QTGMVLGMMI GAGVAVLVTA ENSTTRP00000003666/1-1308 ---------- ---------- -----MEAPL QTGMVLGVMI GAGVAVLVTA bmy_17830T0/1-1939 MAGGGAVAHP VESELPDLPP SLKQLMEAPL QTGMVLGVMI GSGVAVLVTA BACU018217/1-1311 ---------- ---------- -----MEAPL QTGMVLGVMI GAGVAVLVTA 601 650 ENSBTAP00000007351/1-1320 VLILLLVRRL RV-------- ---------- ---------- -------PKA ENSTTRP00000003666/1-1308 VLILLLVRRL RV-------- ---------- ---------- -------PKT bmy_17830T0/1-1939 VLILLLVRRL RVPSSRDGIC WSLYAASPSL ARAECAWSSE CPSPHLTPET BACU018217/1-1311 VLILLLVRRL RV-------- ---------- ---------- -------PKT 651 700 ENSBTAP00000007351/1-1320 PAPDGPRYRF RKRDKVLFYG RKIMRKVSQS TSSLVDASVS TTSRPRMKKK ENSTTRP00000003666/1-1308 PAPDGPRYRF RKRDKVLFYG RKIMRKVSQS TSSLVDTSVS TTSRPRMKKK bmy_17830T0/1-1939 PAPDGPRYRF RKRDKVLFYG RKIMRKVSQS TSSLVDASVS TTSRPRMKKK BACU018217/1-1311 PAPEGPRYRF RKRDKVLCYG RKIMRKVSQS TSSLVDASVS TTSRPRMKKK 701 750 ENSBTAP00000007351/1-1320 LKMLNIAKKI LRIQKEAPTL QRKEPPPAVL EADLTEGDLA NSHLPSEVLY ENSTTRP00000003666/1-1308 LKMLNIAKKI LRIQKEAPTL QRKEPPPAVL EADLTEGDLA NSHLPSEVLY bmy_17830T0/1-1939 LKMLNIAKKI LRIQKETPTL QRKEPPPAVL EADLTEGDLA NSHLPSEVLY BACU018217/1-1311 LKMLNIAKKI LRIQKETPTL QRKEPPPAVL EADLTEGDLA NSHLPSEVLY 751 800 ENSBTAP00000007351/1-1320 MLKNVRVLGH FEKPLFLELC RHMVFQRLSQ GDYVFRPGQP DASIYVVQDG ENSTTRP00000003666/1-1308 MLKNVRVLGH FEKPLFLELC RHMVFQRLSQ GDYVFRPGQP DASIYVVQDG bmy_17830T0/1-1939 MLKNVRVLGH FEKPLFLELC RHMVFQRLSQ GDYVFRPGQP DASIYVVQDG BACU018217/1-1311 MLKNVRVLGH FEKPLSLELC RHMVFQRLSQ GDYVFRPGQP DASIYVVQDG 801 850 ENSBTAP00000007351/1-1320 LLELCLPGPD GKECVVKEVV PGDSVNSLLS ILDVITGHQH PQRTVSARAA ENSTTRP00000003666/1-1308 LLELCLPAPX XXXXXXXXXX XXXXXXXXXX XXXXXXGHQH PQRTVSARAA bmy_17830T0/1-1939 LLELCLPAPD GKECVVKEVV PGDSVNSLLS ILDVITGHQH PQRTVSARAA BACU018217/1-1311 LLELCLPAPD GKECVVKEVV PGDSVNSLLS ILDVITGHQH PQRTVSARAA 851 900 ENSBTAP00000007351/1-1320 RDSTVLRLPV EAFSAVFTKY PESLVRVVQI IMVRLQRVTF LALHNYLGLT ENSTTRP00000003666/1-1308 RDSTVMRLPV EAFSAVFTKY PESLVRVVQI IMVRLQRVTF LALHNYLGLT bmy_17830T0/1-1939 RDSTVLRLPV EAFSAVFTKY PESLVRVVQI IMVRLQRVTF LALHNYLGLT BACU018217/1-1311 RDSTVLRLPV EAFSAVFTKY PESLVRVVQI IMVRLQRVTF LALHNYLGLT 901 950 ENSBTAP00000007351/1-1320 NELFSHEIQP LRLFPSPGLP PRTSPVRGSK RMVSTVASEE LRETPGRPSD ENSTTRP00000003666/1-1308 NELFSHEIQP LRLFPSPGLP ARTSPVRGSK RIASTSASEE ARETPGRPPD bmy_17830T0/1-1939 NELFSHEIQP LRLFPSPGLP ARTSPVRGSK RMVSTSATEE PRETPGRPPD BACU018217/1-1311 NELFSHEIQP LRLFPSPGLP ARTSPVRGSK RTVSTSATEE PRETPGRPPD 951 1000 ENSBTAP00000007351/1-1320 PTGAPLPGTG GTQGDPVKPT SLETSSAPLL SRCISMPVDI SGLQGGPRSD ENSTTRP00000003666/1-1308 PTGAPLPATA ---GDPVKPT SLEAPSAPLL SRCISMPVDI SGLQGGPRSD bmy_17830T0/1-1939 PAGAPLPGTA ---GDPVKPA SLEAPSAPLL IRCISMPVDI SGLQGGPRSD BACU018217/1-1311 PTGAPLPGTA ---GDPVKPT SLEAPSAPLL SRCISMPVDI SGLQGGPRSD 1001 1050 ENSBTAP00000007351/1-1320 FDMAYERGRI SVSLQEEASG GFQAASAR-- ---------- ---------- ENSTTRP00000003666/1-1308 FDMAYERGRI SVSLQEEASW GPQAALAR-- ---------- ---------- bmy_17830T0/1-1939 FDMAYERGRI SVSLQEEASV GPQAALARVR PCPLPPPHPS PLLGPWSGHR BACU018217/1-1311 FDMAYERGRI SVSLQEEASV GLQAALAR-- ---------- ---------- 1051 1100 ENSBTAP00000007351/1-1320 ---------- ---------- -TPSQEPREQ PAGACEYSYC EDESASGSCP ENSTTRP00000003666/1-1308 ---------- ---------- -TPTQEPREQ PAGACEYSYC EDESATGGCP bmy_17830T0/1-1939 WSPPRRKVGW EQGDHRPCPT QTPTQEPREQ PAGACEYSYC EDESATGGCP BACU018217/1-1311 ---------- ---------- -TPTQEAREQ PAGACEYSYC EDESATGGCP 1101 1150 ENSBTAP00000007351/1-1320 FGPYQGRQTS SIFEAAKQEL AKLMQIEDPT LLNSRVLLHH AKAGTIIARQ ENSTTRP00000003666/1-1308 FGPYQGRQTS SIFEAAKREL AKLMRIEDPS LLNSRVLLHH TKAGTIIARQ bmy_17830T0/1-1939 FGPYQGRQTS SIFEAAKREL AKLMRIEDPS LLNSRVLLHH TKAGTIIARQ BACU018217/1-1311 FGPYQGRQTS SIFEAAKREL AKLMRIEDPS LLNSRVLLHH TKAGTIIARQ 1151 1200 ENSBTAP00000007351/1-1320 GDQDVSLHFV LWGSLHVYQR MIDKAEDVCL FVVQPGELVG QLAVLTGEPL ENSTTRP00000003666/1-1308 GDQDVSLHFV LWGCLHVYQR MIDKAEDVCL FVVQPGELVG QLAVLTGEPL bmy_17830T0/1-1939 GDQDVSLHFV LWGCLHVYQR MIDKAEDVCL FVVQPGELVG QLAVLTGEPL BACU018217/1-1311 GDQDVSLHFV LWGCLHVYQR MIDKAEDVCL FVVQPGELVG QLAVLTGEPL 1201 1250 ENSBTAP00000007351/1-1320 IFTLRAQRDC TFLRISKSNF YEIMRAQPSV VLSAAQTVAA RMSPFVRQMD ENSTTRP00000003666/1-1308 IFTLRAQRDC TFLRISKSDF YEIMRAQPSV VLSAAQTVAA RMSPFVRQMD bmy_17830T0/1-1939 IFTLRAQRDC TFLRISKSDF YEIMRAQPSV VLSAAQTVAA RMSPFVRQMD BACU018217/1-1311 IFTLRAQRDC TFLRISKSDF YEIMRAQPSV VLSAAQTVAA RMSPFVRQMD 1251 1300 ENSBTAP00000007351/1-1320 FAIDWTAVEA GRALYRQGDR SDCTYIVLNG RLRSVIQRGS GKKELVGEYG ENSTTRP00000003666/1-1308 FAIDWTAVEA GRALYRQGDR SDCTYIVLNG RLRSVIQRGN GKKELVGEYG bmy_17830T0/1-1939 FAIDWTAVEA GRAL--QGDR SDCTYIVLNG RLRSVIQRGN GKKELVGEYG BACU018217/1-1311 FAIDWTAVEA GRALYRQGDR SDCTYIVLNG RLRSVIQRGN GKKELVGEYG 1301 1350 ENSBTAP00000007351/1-1320 RGDLIGVVEA LTRQPRATTV HAVRDTELAK LPEGTLGHIK RRYPQVVTRL ENSTTRP00000003666/1-1308 RGDLIGVVEA LTRQPRATTV HAVRDTELAK LPEGTLGHIK RRYPQVVTRL bmy_17830T0/1-1939 RGDLIGVVEA LTRQPRATTV HAVRDTELAK LPEGTLGHIK RRYPQVVTRL BACU018217/1-1311 RGDLIGVVEA LTRQPRATTV HAVRDTELAK LPEGTLGHIK RRYPQVVTRL 1351 1400 ENSBTAP00000007351/1-1320 IHLLSQKILG NLQQLRGPFP -GSGLGVPPH SELTNPASNL STVAVLPVCA ENSTTRP00000003666/1-1308 IHLLSQKILG NLQQLQGPFP AGSGLGVPPH SELTNPASNL ATVAVLPVCA bmy_17830T0/1-1939 IHLLSQKILG NLQQLQGPFP -GSGLGVPPH SELTNPASNL ATVAVLPVCA BACU018217/1-1311 IHLLSQKILG NLQQLQGPFP -GSGLGVPPH SELTNPASNL ATVAVLPVCA 1401 1450 ENSBTAP00000007351/1-1320 EVPMVAFMLE LQHALQAIGP TLLLNSDIIR ARLGASALDS IQEFRLSGWL ENSTTRP00000003666/1-1308 EVPMVAFMLE LQHALQAIGP TLLLNSDIIR ARLGASALDS IQEFRLSGWL bmy_17830T0/1-1939 EVPMVAFMLE LQHALQAIGP TLLLNSDIIR ARLGASALDS IQEFRLSGWL BACU018217/1-1311 EVPMVAFMLE LQHALQAIGP TLLLNSDIIR ARLGASALDS IQEFRLSGWL 1451 1500 ENSBTAP00000007351/1-1320 AQQEDTHRIV LYQTDTSLTP WTVRCLRQAD CILIVGLGDQ EPTLGQLEQM ENSTTRP00000003666/1-1308 AQQEDTHRIV LYQTDASLTP WTVRCLRQAD CILIVGLGDQ EPTLGQLEQM bmy_17830T0/1-1939 AQQEDTHRIV LYQTDASLTP WTLRCLRQAD CILIVGLGDQ EPTLGQLEQM BACU018217/1-1311 AQQEDTHRIV LYQTDASLTP WTLRCLRQAD CILIVGLGDQ EPTLGQLEQM 1501 1550 ENSBTAP00000007351/1-1320 LENTAVRALK QLVLLHREEG AGPTRTVEWL NMRSWCSGHL HLRCPRRLFS ENSTTRP00000003666/1-1308 LENTAVRALK QLVLLHREEG PGPTRTVEWL NMRSWCSGHL HLRCPRRLFS bmy_17830T0/1-1939 LENTAVRALK QLVLLHREEG QGPTRTVEWL NMRSWCSGHL HLRCPRRLFS BACU018217/1-1311 LENTAVRALK QLVLLHREEG QGPTRTVEWL NMRSWCSGHL HLRCPRRLFS 1551 1600 ENSBTAP00000007351/1-1320 RRSPAKLHEL YEKVFSRRAD RHSDFSRLAR VLTGNTIALV LGGGGARGCS ENSTTRP00000003666/1-1308 RRSPAKLHEL YEKVFSKRAD RHSDFSRLAR VLTGNTIALV LGGGGARGCS bmy_17830T0/1-1939 RRSPAKLHEL YEKVFSRRAD RHSDFSRLAR VLTGNTIALV LGGGGARGCS BACU018217/1-1311 RRSPAKLHEL YEKVFSRRAD RHSDFSRLAR VLTGNTIALV LGGGGARGCS 1601 1650 ENSBTAP00000007351/1-1320 HIGVLKALEE AGVPVDLVGG TSIGSFIGAL YAEERSASRT KQRAREWAKV ENSTTRP00000003666/1-1308 HIGVLKALEE AGVPVDLVGG TSIGSFIGAL YAEERSASRT KQRAREWAKS bmy_17830T0/1-1939 HIGVLKALEE AGVPVDLVGG TSIGSFIGAL YAEERSASRT KQRAREWAKS BACU018217/1-1311 HIGVLKALEE AGVPVDLVGG TSIGSFIGAL YAEERSASRT KQRAREWAKV 1651 1700 ENSBTAP00000007351/1-1320 CVM------- -----GKGWG XSAFNRSIHR VFQDKQTEDL WLPYFNVTTD ENSTTRP00000003666/1-1308 MTSVLEPVLD LTYPVTSMFT GSAFNRSIHR VFQDKQIEDL WLPYFNVTTD bmy_17830T0/1-1939 MTSVLEPVLD LTYPVTSMFT GSAFNRSIHR VFQDKQIEDL WLPYFNVTTD BACU018217/1-1311 CVA------- -----GRGFT GSAFNRSIHR VFQDKQIEDL WLPYFNVTTD 1701 1750 ENSBTAP00000007351/1-1320 ITSSAMRVHK DGSLWRYVRA SMTLSGYLPP LCDPKDGHLL MDGGYINNLP ENSTTRP00000003666/1-1308 ITASAMRVHK DGSLWRYVRA SMTLSGYLPP LCDPKDGHLL MDGGYINNLP bmy_17830T0/1-1939 ITASAMRVHK D--------- ---------- ---------- ---------- BACU018217/1-1311 ITASAMRVHK DGSLWRYVRA SMTLSGYLPP LCDPKDGHLL MDGGYINNLP 1751 1800 ENSBTAP00000007351/1-1320 --ADIARSMG AKTVIAIDVG SQDETDLSTY GDSLSGWWLL WKRLNPWADK ENSTTRP00000003666/1-1308 --ADIARSMG AKTVIAIDVG SQDETDLSTY GDSLSGWWLL WKRLNPWADK bmy_17830T0/1-1939 --ADIARSMG AKTVIAIDVG SQDETDLSTY GDSLSGWWLL WKRLNPWAGK BACU018217/1-1311 GKADIARSMG AKTVIAIDVG SQDETDLSTY GDSLSGWWLL WKRLNPWADK 1801 1850 ENSBTAP00000007351/1-1320 IKVPDMAEIQ SRLAYVSCVR QLEVVKSSSY CEYLRPPIDC FKTMDFGKFD ENSTTRP00000003666/1-1308 IKVPDMAEIQ SRLAYVSCVR QLEVVKSSSY CEYLRPPIDC FKTMDFGKFD bmy_17830T0/1-1939 IKVPDMAEIQ SRLAYVSCVR QLEVVKSSSY CEYLRPPIDC FKTMDFGKFD BACU018217/1-1311 IKVPDMAEIQ SRLAYVSCVR QLEVVKSSSY CEYLRPPIDC FKTMDFGKFD 1851 1900 ENSBTAP00000007351/1-1320 QIYDVGYQYG STVFGGWSRG DIIEKMLTDR WSADLNESRR ADVLAFPSSG ENSTTRP00000003666/1-1308 QIYDVGYQYG KAVFGGWTRG DIIEKMLTDR RSADLNESRR ADVLAFPSSG bmy_17830T0/1-1939 QIYDVGYQYG KAVFGGWSRG DVIEKMLTDR RSADLNESRR ADVLAFPSSG BACU018217/1-1311 QIYDVGYQYG KAVFGGWSRG DVIEKMLTDR RSADLNESRR ADVLAFPSSG 1901 1950 ENSBTAP00000007351/1-1320 FTDLAEIVSR IEPPTTSYVS VSDGCADGEE SDCLTEYEED AGPECSRDEG ENSTTRP00000003666/1-1308 FTDLAEIVSR IEPP-TSYVS VSDGCADGEE SDCLTEYEED VGPDCSRDEG bmy_17830T0/1-1939 FTDLAEIVSR IEPP-TSYVS VSDGCADGEE SDCLTEYEED AGPDCSRDEG BACU018217/1-1311 FTDLAEIVSR IEPP-TSYVS VSDGCADGEE SDCLTEYEED AGPDCSRDEG 1951 2000 ENSBTAP00000007351/1-1320 GSPEGASPST ALEMEEEKSI LRHRRWLPQE PSSPAADT ENSTTRP00000003666/1-1308 GSPEGASPST ASEMEEG--- ---------- -------- bmy_17830T0/1-1939 GSPEGASPST ASETEEGKSI LRHRSCLPQN PPRSADA- BACU018217/1-1311 GSPEGASPST ASETEEGKSI LRHRSCLPQN P-------