KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:49 2014 Check: 00 .. Name: ENSP00000334675/1-1250 Len: 1280 Check: 6181 Weight: 1.00 Name: ENSBTAP00000007362/1-1242 Len: 1280 Check: 3049 Weight: 1.00 Name: ENSTTRP00000010199/1-1248 Len: 1280 Check: 3160 Weight: 1.00 Name: bmy_17130T0/1-1251 Len: 1280 Check: 337 Weight: 1.00 Name: BACU011395/1-1244 Len: 1280 Check: 9510 Weight: 1.00 // 1 50 ENSP00000334675/1-1250 ---MEASRRF PEAEALSPEQ AAHYLRYVKE AKEATKNGDL EEAFKLFNLA ENSBTAP00000007362/1-1242 ---MEVSRGF AEAGALSPEQ AASYLRYVKE AKEATKNGDL EQALKLFNLA ENSTTRP00000010199/1-1248 ---MEASRGF AEAGALSPEQ AARYLRYVKE AKAATKNGDL EEALKLFNLA bmy_17130T0/1-1251 MARNDPENFA ASKPGIPSVE RKCFARYVKE AKEATKNGDL EEALKLFNLA BACU011395/1-1244 ---------- ---------- ----MRYVKE AKEATKNGDL EEALKLFNLA 51 100 ENSP00000334675/1-1250 KDIFPNEKVL SRIQKIQEAL EELAEQGDDE FTDVCNSGLL LYRELHNQLF ENSBTAP00000007362/1-1242 KDIFPNEKVM SRIQKIQEAL EELAEHGDDE FIDVCNSGLL LYQELHNQLY ENSTTRP00000010199/1-1248 KDIFPNEKVM SRIQKLQEAL EELAEHGDDE FTDVCNSGLL LYRELHNQLF bmy_17130T0/1-1251 KDIFPNEKVM SRIQKIQEAL EELAEHGDDE FTDVCNSGLL LYRELHNQLF BACU011395/1-1244 KDIFPNEKVM SRIQKIQEAL EELAEHGDDE FTDVCNSGLL LYRELHNQLF 101 150 ENSP00000334675/1-1250 EHQKEGIAFL YSLYRDGRKG GILADDMGLG KTVQIIAFLS GMFDASLVNH ENSBTAP00000007362/1-1242 EYQKEGIAFL YSLYRDGRRG GILADDMGLG KTVQIIAFLS GMFDASLVNH ENSTTRP00000010199/1-1248 EYQKEGVAFL YSLYRDGRRG GILADDMGLG KTVQIIAFLS GMFDASLVNH bmy_17130T0/1-1251 EYQKEGVAFL YSLYRDGRRG GILADDMGLG KTVQIIAFLS GMFDASLVNH BACU011395/1-1244 EYQKEGVAFL YSLYRDGRRG GILADDMGLG KTVQIIAFLS GMFDASLVNH 151 200 ENSP00000334675/1-1250 VLLIMPTNLI NTWVKEFIKW TPGMRVKTFH GPSKDERTRN LNRIQQRNGV ENSBTAP00000007362/1-1242 VLLIMPTSLI STWLREFVKW TPGMRVKTFH GPSKDERTRN LCRIQQRNGV ENSTTRP00000010199/1-1248 VLLIMPTSLI STWLKEFVKW TPGMRVKTFH GPSKDERTRN LSRIQQRNGV bmy_17130T0/1-1251 VLLIMPTSLI STWLKEFVKW TPGMRVKTFH GPSKDERTRN LSRIQQRNGV BACU011395/1-1244 VLLIMPTSLI STWLKEFVKW TPGMRVKTFH GPSKDERTRN LGRIQQRNGV 201 250 ENSP00000334675/1-1250 IITTYQMLIN NWQQLSSFRG QEFVWDYVIL DEAHKIKTSS TKSAICARAI ENSBTAP00000007362/1-1242 IITTYQMLIN NWQQLSSLNG QEFLWDYVIL DEAHKIKSSS TKSAICARAI ENSTTRP00000010199/1-1248 IITTYQMLIN NWQQLSSLNG QEFVWDYVIL DEAHKIKTSS TKSAICARAI bmy_17130T0/1-1251 IITTYQMLIN NWQQLSSLNG QEFVWDYVIL DEAHKIKTSS TKSAICARAI BACU011395/1-1244 IITTYQMLIN NWQQLSSLNG QEFVWDYVIL DEAHKIKTSS TKSAICARAI 251 300 ENSP00000334675/1-1250 PASNRLLLTG TPIQNNLQEL WSLFDFACQG SLLGTLKTFK MEYENPITRA ENSBTAP00000007362/1-1242 PASNRILLTG TPIQNNLQEL WSLFDFACQG SLLGTLRTFK MEYENPITRA ENSTTRP00000010199/1-1248 PASNRILLTG TPIQNNLQEL WSLFDFACQG SLLGTLKTFK MEYENPITRA bmy_17130T0/1-1251 PASNRILLTG TPIQNNLQEL WSLFDFACQG SLLGTLKTFK MEYENPITRA BACU011395/1-1244 PASNRILLTG TPIQNNLQEL WSLFDFACQG SLLGTLKTFK MEYENPITRA 301 350 ENSP00000334675/1-1250 REKDATPGEK ALGFKISENL MAIIKPYFLR RTKEDVQKKK SSNPEARLNE ENSBTAP00000007362/1-1242 REKDATPGEK ALGFKISENL MAIIKPYFLR RTKEEVQKKK SSNPEVQLSE ENSTTRP00000010199/1-1248 REKDATPGEK ALGFKISENL MAIIKPYFLR RTKEEVQKKK SSNPEVQLSE bmy_17130T0/1-1251 REKDATPGEK ALGFKISENL MAIIKPYFLR RTKEEVQKKK SSNPEVQLSE BACU011395/1-1244 REKDATPGEK ALGFKISENL MAIIKPYFLR RTKEEVQKKK SSNPEVQLSE 351 400 ENSP00000334675/1-1250 KNPDVDAICE MPSLSRKNDL IIWIRLVPLQ EEIYRKFVSL DHIKELLMET ENSBTAP00000007362/1-1242 KSPDVGAICE MPSLSRKNDL IIWIRLVPLQ EEIYRKFVSL DHIKELLMET ENSTTRP00000010199/1-1248 KSPDVGVICE MPSLSRKNDL IIWIRLVPLQ EEIYRKFVSL DHIKELLMET bmy_17130T0/1-1251 KSPDVGAICE MPSLSRKNDL IIWIRLVPLQ EEIYRKFVSL DHIKELLMET BACU011395/1-1244 KSPDVGAICE MPSLSRKNDL IIWIRLVPLQ EEIYRKFVSL DHIKELLMET 401 450 ENSP00000334675/1-1250 RSPLAELGVL KKLCDHPRLL SARACCLLNL GT--FSAQDG NEGEDSPDVD ENSBTAP00000007362/1-1242 RSPLAELGVL KKLCDHPRLL SARACGLLNL GAAKFSVQDE IEGEDSSDVD ENSTTRP00000010199/1-1248 RSPLAELGVL KKLCDHPRLL SARACGLLNL GAVKFSVQDE IEGEDSSDVD bmy_17130T0/1-1251 RSPLAELGVL KKLCDHPRLL SARACGLLNL GAVKFSVQDE IEGEDSSDVD BACU011395/1-1244 RSPLAELGVL KKLCDHPRLL SARACGLLNL GAVKFSVQDE IEGEDSSDVD 451 500 ENSP00000334675/1-1250 HIDQVTDDTL MEESGKMIFL MDLLKRLRDE GHQTLVFSQS RQILNIIERL ENSBTAP00000007362/1-1242 HIDQISDDTL MEESGKMLFL MDLLKKLRDE GHQTLVFSQS RRILNIIERL ENSTTRP00000010199/1-1248 HIDQISDDAL MEESGKMIFL MDLLNRLRDE GHQTLVFCQS R-IINIIERL bmy_17130T0/1-1251 HIDQISDDAL MEESGKMIFL MGLLKRLRDE GHQTLVFCQS RRILNIIERL BACU011395/1-1244 HIDQISDDAL MEESGKMIFL MGLLKRLRDE GHQTLVFCQS RRILNIIERL 501 550 ENSP00000334675/1-1250 LKNRHFKTLR IDGTVTHLLE REKRINLFQQ NKDYSVFLLT TQVGGVGLTL ENSBTAP00000007362/1-1242 LKNRHFKILR IDGTITHLVE REKRISLFQQ NKDYSVFLLT TQVGGVGLTL ENSTTRP00000010199/1-1248 LKNRHFKILR IDGTVTHLVE REKRISLFQK NKDYSVFLLT TQVGGVGLTL bmy_17130T0/1-1251 LKNRHFKILR IDGTVTHLVE REKRISLFQQ NKDYSVFLLT TQVGGVGLTL BACU011395/1-1244 LKNRHFKILR IDGTVTHLVE REKRISLFQQ NKDYSVFLLT TQVGGVGLTL 551 600 ENSP00000334675/1-1250 TAATRVVIFD PSWNPATDAQ AVDRVYRIGQ KENVVVYRLI TCGTVEEKIY ENSBTAP00000007362/1-1242 TAASRVVIFD PSWNPATDAQ AVDRVYRIGQ KENVVVYRLI TCGTVEEKIY ENSTTRP00000010199/1-1248 TAASRVVIFD PSWNPATDAQ AVDRVYRIGQ KENVVVYRLI TCGTVEEKIY bmy_17130T0/1-1251 TAASRVVIFD PSWNPATDAQ AVDRVYRIGQ KENVVVYRLI TCGTVEEKIY BACU011395/1-1244 TAASRVVIFD PSWNPATDAQ AVDRVYRIGQ KENVVVYRLI TCGTVEEKIY 601 650 ENSP00000334675/1-1250 RRQVFKDSLI RQTTGEKKNP FRYFSKQELR ELFTIEDLQN SVTQLQLQSL ENSBTAP00000007362/1-1242 RRQVFKDSLI RQTTGDKKNP FRYFSKQELR ELFTIEDFQN SATQLQLQSL ENSTTRP00000010199/1-1248 RRQVFKDSLI RQTTGDKKNP FRYFSKQELR ELFTIEDFQN SATQMQLQSL bmy_17130T0/1-1251 RRQVFKDSLI RQTTGDKKNP FRYFSKQELR ELFTIEDFQN SATQMQLQSL BACU011395/1-1244 RRQVFKDSLI RQTTGDKKNP FRYFSKQELR ELFTIEDFQN SATQMQLQSL 651 700 ENSP00000334675/1-1250 HAAQRKSDIK LDEHIAYLQS LGIAGISDHD LMYTCDLSVK EELDVVEESH ENSBTAP00000007362/1-1242 HAAQRRSDKN LDEHIAFLHS LRIAGISDHD LMYTRDLSVK EELDVIEDSH ENSTTRP00000010199/1-1248 HAAQRRSDKK LDEHIDFLHS LRIAGISDHD LMYTHDLSVK EELDVIEDSH bmy_17130T0/1-1251 HAAQRRSDKK LDEHIAFLHS LRIAGISDHD LMYTHDLSVK EELDVIEDSH BACU011395/1-1244 HAAQRRSDKK LDEHIAFLHS LRIAGISDHD LMYTHDLSVK EELDVIEDSH 701 750 ENSP00000334675/1-1250 YIQQRVQKAQ FLVEFESQNK EFLMEQQRTR NEGAWLREPV FPSSTKKKCP ENSBTAP00000007362/1-1242 YIQQRVQKAQ FLVESESQNT ELLMERQKMG NEGIWLREPV Y--QTKKKRP ENSTTRP00000010199/1-1248 YIQQRVQKAQ FLVESESQNT EFLMERQKAG NEGIWLREPV FLSQTKKKCH bmy_17130T0/1-1251 YIQQRVQKAQ FLVEFESQNT EFLMERQKAG NEGIWLREPV FPSQM-KKCH BACU011395/1-1244 YIQQRVQKAQ FLVEFESQNT EFLMERQKAG NEGIWLREPV FPSQTKKKCH 751 800 ENSP00000334675/1-1250 KLNKPQPQPS PLLSTHHTQE EDISSKMASV VIDDLPKEGE KQDLSSIKVN ENSBTAP00000007362/1-1242 KVNKPQPQPS SHLPVYHTQ- EEISSLMASI IIDDLPKEDE K-DLSRIKLN ENSTTRP00000010199/1-1248 ELNKSQPRPS PLLPTYHTQE EEISHQMASV IIEDLPEESE KQDLARRKMN bmy_17130T0/1-1251 ELNKPQPRPS PLLPTHHTQE EEISPQMASV IIEDLPQEGE KQDLARRKMN BACU011395/1-1244 ELNKPQPRPS PLLPTHHTQ- EEISTQMASV IIEDMPQEGE KQDLARRKMN 801 850 ENSP00000334675/1-1250 VTTLQDGK-- --GTGSADSI ATLPKGFGSV EELCTNSSLG MEKSFATKNE ENSBTAP00000007362/1-1242 DTIPQDGRHP CVITLNDDFV TTLPKGCGDV EEIFPDSLSG M--------- ENSTTRP00000010199/1-1248 VTIPQDGRHP CASTFDADFV ATLPKGCEDV EEIWTDSVSG M--------- bmy_17130T0/1-1251 VTTPQDGRHP CASTFDADFV ATLPKGCEDV EEIWTDSLSG M--------- BACU011395/1-1244 VTTPQDGRHL CASTFDADFV ATLPKGCEDV EEIWTDSLSG M--------- 851 900 ENSP00000334675/1-1250 AVQKETLQEG PKQEALQEDP LESFNYVLSK STKADIGPNL DQLKDDEILR ENSBTAP00000007362/1-1242 ALQKEASQEG FMQESEQESP LASFNYLPSK SARVDLGPNL DQLEDDEVLH ENSTTRP00000010199/1-1248 ALQKEASQEG PMREAQQESP QGSFNFLPSK SVRADLGPNL DQLEEDEILH bmy_17130T0/1-1251 ALQKEASQEG PMQEAQQESP QGSFNFLPSK SVRADLGPNL DQLEEDEILH BACU011395/1-1244 ALQEEASQEG PMQEAQQESP QGSFKFLPSK SVRADLGPNL DQLEEDEILH 901 950 ENSP00000334675/1-1250 HCNPWPIISI TNESQNAESN VSIIEIA-DD LSASHSALQD AQASEAKLEE ENSBTAP00000007362/1-1242 HCNPSPANPK TKEYQRPESN VSVIKIADDD LTAAHSALQD AQANEAKLEE ENSTTRP00000010199/1-1248 HCNPWPANPE IKEYQRPESN VSVIKIADDD LAAAHSALQD AQVNEAKLEE bmy_17130T0/1-1251 HCNPWPANPK TKEYQRPESN VSVIKIADDD LAAAHSALQD AQVNEAKLEE BACU011395/1-1244 HCNPWPANPE TKEYQRPESN VSVIKIADDD LAAAHSALQD AQVNEAKLEE 951 1000 ENSP00000334675/1-1250 EPSASSPQYA CDFNLFLEDS ADNRQNFSSQ SLEHVEKENS LCGSAPNSRA ENSBTAP00000007362/1-1242 EPLASSGQYA CDFNLFLEDS ADNGQNLSSQ FLEHVEKENS LCGSAANSRA ENSTTRP00000010199/1-1248 EPLASSAQYA CDFNLFLEDS ADNGQNFSSQ SLEHVEKENS LCGSAANSRA bmy_17130T0/1-1251 EPLASSAQYA CDFNLFLEDS ADNGQKFSSQ SLEHVEKENS LCGSAANSRA BACU011395/1-1244 EPLASSAQYA CDFNLFLEDS ADNGQKFSSQ SLEHVEKENS LYGSAANSRA 1001 1050 ENSP00000334675/1-1250 GFVHSKTCLS WEFSEKDDEP EEVVVKAKIR SKARRIVSDG EDEDDSF-KD ENSBTAP00000007362/1-1242 ESVHSKACLS VDLSEEDDEP EEV-VNVKIR RKARRIDSDN EDEH-TF-KD ENSTTRP00000010199/1-1248 ESVHSKACLS VDLSEKDDEP EEVVVNVKVR RKARCIDSDD EVEHDTFITD bmy_17130T0/1-1251 ESVHSKACLS VDLSEKDDEP EEVVVNVKVR RKARRIDSDD EVEHDTFITD BACU011395/1-1244 ESVHSKACLS VDLSEKDDEP EEVVVNVKVR RKARRIDSDD EVEHDTFITD 1051 1100 ENSP00000334675/1-1250 TSSINPFNTS LFQFSSVKQF DASTPKNDIS PPGRFFSSQI PSSVNKSMNS ENSBTAP00000007362/1-1242 TSSTNPFNTS PFPFLSVKQF DASTPKNDIS LPERFFSPKI SDSINKSVNS ENSTTRP00000010199/1-1248 TSGTNPFNTS PFPFLSVKQF DASTPKNDIS PPGRFFSPKI SDSLNKSINS bmy_17130T0/1-1251 TSGTNPFNTS PFPFLSVKQF DASTPKNDXS PPGRFFSPKI SDSLNKSINS BACU011395/1-1244 TSGTNPFNTS PFPFLSVKQF DASTPKNDVS PPGRFFSPKI SDSLNKSINS 1101 1150 ENSP00000334675/1-1250 RRSLASRRSL INMVLDHVED MEERLDDSSE AKGPEDYPEE GVEESSGEAS ENSBTAP00000007362/1-1242 RRSLASRRSL INVVLDHVED MEERLDNSSE AKVVEDHLEE GAEESGDEAP ENSTTRP00000010199/1-1248 RRSLASRRSL INVVLDHVED MEERLDNSSE AKVAEDYLEE GAEESSGEAP bmy_17130T0/1-1251 RRSLASRRSL INVVLDHVED MEERLDNSSE AKVAEDYLEE GAEESSGEAP BACU011395/1-1244 RRSLASRRSL INVVLDHVED MEERLDNSSE AKVAEDYLEE GAEESSGEAP 1151 1200 ENSP00000334675/1-1250 KYTEEDPSGE TLSSENKSSW LMTSKPSALA QETSLGAPEP LSGEQLVGSP ENSBTAP00000007362/1-1242 EHTKEDPSRE TLSSENKSSQ LSTSKPGALA QETSPGDPEP LSDGQLVDSP ENSTTRP00000010199/1-1248 EHTEEDPSRE TLSSENKSSW LSTPKPGALA QETFPGDPEP LSGGQLVDSP bmy_17130T0/1-1251 EHTEEDPSRE TLSSENKSSR LSTPKPGALA QETFPGDPEP LSGGQLVDSP BACU011395/1-1244 EHTEEDPSRE TLSSENKSSR LSTPKPGALA QETFPGDPEP LSGGQLVDSP 1201 1250 ENSP00000334675/1-1250 QDKAAEATND YETLVKRGKE LKECGKIQE- ---ALNCLVK ALDIKSADPE ENSBTAP00000007362/1-1242 QDEAMEAVND YDTLVLHGKE LKECGKIQE- ---ALDCLVK ALDIKSSDPE ENSTTRP00000010199/1-1248 QDEALEAADD YETLVLRGKE LKECGKIQE- ---ALDCLVK ALDIKSSDSE bmy_17130T0/1-1251 QDEALEAADD YETLVLRGKE LKECGKIQE- ---ALDCLVK ALDIKSSDSE BACU011395/1-1244 QDEALEAADD YETLVL--QP LFPFGGISEI RRRTLNCFGY RTKPLQAPPG 1251 1300 ENSP00000334675/1-1250 VMLLTLSLYK QLNNN----- ---------- ENSBTAP00000007362/1-1242 VMLMTLSLYK QLNKT----- ---------- ENSTTRP00000010199/1-1248 VMLMTLSLYK QLNKT----- ---------- bmy_17130T0/1-1251 VMLMTLSLYK QLNKT----- ---------- BACU011395/1-1244 TAFPATTGYG SLGVGMKQSS DPNEEPALNG