KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:56 2014 Check: 00 .. Name: ENSP00000441913/1-1731 Len: 1762 Check: 5716 Weight: 1.00 Name: ENSBTAP00000007406/1-1361 Len: 1762 Check: 1034 Weight: 1.00 Name: ENSTTRP00000006486/1-667 Len: 1762 Check: 9287 Weight: 1.00 Name: bmy_11588T0/1-1168 Len: 1762 Check: 9151 Weight: 1.00 // 1 50 ENSP00000441913/1-1731 MELSCSEAPL YGQMMIYAKF DKNVYLPEDA EFYFTYDGSH QRHVMIAERI ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000441913/1-1731 EDNVLQSSVP GHGLQETVTV SVCLCSEGYS PVTMGSGSVT YVDNMACRLA ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000441913/1-1731 RLLVTQANRL TACSHQTLLT PFALTAGALP ALDEELVLAL THLELPLEWT ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000441913/1-1731 VLGSSSLEVS SHRESLLHLA MRWGLAKLSQ FFLCLPGGVQ ALALPNEEGA ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000441913/1-1731 TPLDLALREG HSKLVEDVTN FQGRWSPSFS RVQLSEEASL HYIHSSETLT ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000441913/1-1731 LTLNHTAEHL LEADIKLFRK YFWDRAFLVK AFEPEARPEE RTAMPSSGAE ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------K VKLNCKINSF YFICPVFI-- ---------- ---------- 301 350 ENSP00000441913/1-1731 TEEEIKNSVS SRSAAEKEDI KRVKSLVVQH NEHEDQHSLD LDRSFDILKK ENSBTAP00000007406/1-1361 ---------- ---------- ---------- ---------- -DRSFDALKK ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- --------FP LDHSFDVLKK 351 400 ENSP00000441913/1-1731 SKPPSTLLAA GRLSDMLNGG DEVYANCMVI DQVGDLDISY INIEGITATT ENSBTAP00000007406/1-1361 SKHPSTLLAA GQLSDMLNGG DDVYANCMVI DQVGDLDINY INIEEIPANT ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 SKHPPTFLAA GRLSDMLNGG DEVYANCMVI DQVGDLDINY INIEGITENT 401 450 ENSP00000441913/1-1731 SPESRGCTLW PQSSKHTLPT ETSPSVYPLS ENVEGTAHTE AQQSFMSPSS ENSBTAP00000007406/1-1361 CLESMDSSLG PESSKPSLPT EASAGTYPPN KRPEVTSHTE AQSSFIS-SS ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 CLESMGSTLG PQSSKPILPT ETSAGMYPPN ENTEVTSHTE AQPSFMSPSS 451 500 ENSP00000441913/1-1731 SCASNLNLSF GWHGFEKEQS HLKKRSSSLD ALDADSEGEG HSEPSHICYT ENSBTAP00000007406/1-1361 SYASNLNLSF GLRGFEKEQS RLKKRSSSLD ALDADSEGEG HSEQSHNCYT ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 SYASSLNLSF GLRGFEKEQS HLKKRSSSLD ALDADSEGEG HSERSRICYT 501 550 ENSP00000441913/1-1731 PGSQSSSRTG IPSGDELDSF ETNTEPDFNI SRAESLPLSS NLQSKESLLS ENSBTAP00000007406/1-1361 PVCQSSSRTG IASGDELDSF ETNTEPDFNI SRTESFSLSS SLQLKESLFS ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 PVSQSSSRTG IPSGDELDSF ETNTEPDFNI SRTESLSLSS SLQLKESLFS 551 600 ENSP00000441913/1-1731 GVRSRSYSCS SPKISLGKTR LVRELTVCSS SEEQRAYSLS EPPRENRIQE ENSBTAP00000007406/1-1361 GIRSRSYSCS SPKISLGKTR LMRDFTVCNS IEEQRAYSLP EPPREQRIQE ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 GVRSRSYSCS SPKISLGKTR LIRDFTVCNS AEEQRAYSLP EPPREKRIQE 601 650 ENSP00000441913/1-1731 EEWDKYIIPA KSESEKYKVS RTFSFLMNRM TSPRNKSKTK SKDAKDKEKL ENSBTAP00000007406/1-1361 EEWDKYIIPA KSESEKYKVS RTFSFLMNRM TSPRNKSKTK GKDAKDKEKL ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 EEWDKYIIPA KSESEKYKVS RTFSFLMNRM TSPRNKSKTK GKDAKDKEKL 651 700 ENSP00000441913/1-1731 NRHQFAPGTF SGVLQCLVCD KTLLGKESLQ CSNCNANVHK GCKDAAPACT ENSBTAP00000007406/1-1361 TRHQFVPGTF SGVLQCLVCD KTLLGKESFQ CSNCNGNVHK VCKDAAPPCT ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 SRHQFVPGTF SGALQCSVCD KTLLGKESFQ CSNCNANVHK GCKDAASPCT 701 750 ENSP00000441913/1-1731 KKFQEKYNKN KPQTILGNSS FRDIPQPGLS LHPSSSVPVG LPTGRRETVG ENSBTAP00000007406/1-1361 KKFQEKYNKN KPQTILGNSS FRDVPSPGLS LHPSSSMPIG LPTGRKEMAG ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 KKFQVKYNKN KPQTILGNSS FRDVPPPGLS LHPSSSMPIG LPTGRKETAG 751 800 ENSP00000441913/1-1731 QVHPLSRSVP GTTLESFRRS ATSLESESDH NSCRSRSHSD ELLQSMGSSP ENSBTAP00000007406/1-1361 QVHPLSRSVP GTTLESFRRP GASLESENDG STWRSRSHSD ELFQPMGLSP ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 QVHPLSRSVP GTTLESFRRS GASLESESDG STWRSRSQSD ELFQPMGSSP 801 850 ENSP00000441913/1-1731 STESFIMEDV VDSSLWSDLS SDAQEFEAES WSLVVDPSFC NRQEKDVIKR ENSBTAP00000007406/1-1361 STDSFLMEDV VDSSLWSDLS GDAQEFEAES WSLVVDPSFC SRQEKDVIQR ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 STDSFLME-- ---------- ---------- ---------- ---------- 851 900 ENSP00000441913/1-1731 QDVIFELMQT EMHHIQTLFI MSEIFRKGMK EELQLDHSTV DKIFPCLDEL ENSBTAP00000007406/1-1361 QDVIFELMQT ELHHIQTLFI MSEIFRKGMK EELQLDHSTV DKIFPCLDEL ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- -------DEL 901 950 ENSP00000441913/1-1731 LEIHRHFFYS MKERRQESCA GSDRNFVIDR IGDILVQQFS EENASKMKKI ENSBTAP00000007406/1-1361 LEIHKHFFCS MKERRQESCV GNDRNFIIGR IGDILVQQFS EENANKMKKI ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 LEIHRHFFYS MKERRQESCV GNDRNFVINR IGDILVQQFS EENANKMKKI 951 1000 ENSP00000441913/1-1731 YGEFCCHHKE AVNLFKELQQ NKKFQNFIK- ---------L RNSNLLARRR ENSBTAP00000007406/1-1361 YGEFCSHHKE AVSLFKELQQ NKKFQNFIK- ---------L RNSNLLARRR ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ---------- bmy_11588T0/1-1168 YGEFCSHHKE AVSLFKELQQ NKKFQNFIKA SILKLCYKML RNSNLLARRR 1001 1050 ENSP00000441913/1-1731 GIPECILLVT QRITKYPVLV ERILQYTKER TEEHKDLRKA LCLIKDMIAT ENSBTAP00000007406/1-1361 GIPECILLVT QRITKYPVLV ERILQYTKES TEEQRDLCKA LCLIKDMIAA ENSTTRP00000006486/1-667 ---------- ---------- ---------- ---------- ------MIAA bmy_11588T0/1-1168 GIPECILLVT QRITKYPVLV ERILQYTKEN TEEQKDLCKA LCLIKDMIAA 1051 1100 ENSP00000441913/1-1731 VDLKVNEYEK NQKWLEILNK IENKTYTKLK NGHVFRKQAL MSEERTLLYD ENSBTAP00000007406/1-1361 VDLKVSEYEK KQKWLEILNK IENKTYTKLK NGHVFRKQAL MSKERTLLYD ENSTTRP00000006486/1-667 VDLKVSEYEK KQKWLEILNK IENKTYTKLK NGHVFRKQAL MSKERTLLYD bmy_11588T0/1-1168 VDLKVSEYEK KQKWLEILNK IENKTYTKLK NGHVFRKQTL MSKERTLLYD 1101 1150 ENSP00000441913/1-1731 GLVYWKTATG RFKDILALLL TDVLLFLQEK DQKYIFAAVD QKPSVISLQK ENSBTAP00000007406/1-1361 GLVYWKTATG RFKDILALLL TDVLLFLQEK DQKYIFAAVD QKPSVISLQK ENSTTRP00000006486/1-667 GLVYWKTATG RFKDILALLL TDVLLFLQEK DQKYIFAAVD QKPSVISLQK bmy_11588T0/1-1168 GLVYWKTATG RFKDILALLL TDVLLFLQEK DQKYIFAAVD QKPSVISLQK 1151 1200 ENSP00000441913/1-1731 LIAREVANEE RGMFLISASS AGPEMYEIHT NSKEERNNWM RRIQQAVESC ENSBTAP00000007406/1-1361 LIAREVANEE RGMFLISASS AGPEMYEIHT NSKEERNTWM RRIQQAVESC ENSTTRP00000006486/1-667 LIAREVANEE RGMFLISASS AGPEMYEIHT NSKEERNTWM RRIQQAVESC bmy_11588T0/1-1168 LIAREVANEE RGMFLISASS AGPEMYEIHT NSKEERNTWM RRIQQAVESC 1201 1250 ENSP00000441913/1-1731 PEEKGGRTSE SDEDKRKAEA RVAKIQQCQE ILTNQDQQIC AYLEEKLHIY ENSBTAP00000007406/1-1361 PEEEGGRTSE SDEERRKAEA RVAKIQQCQE ILSNQDQQIC TYLEEKLHIY ENSTTRP00000006486/1-667 PEEEGGRTSE SDEERRKAEA RVAKIQQCQE ILSNQDQQIC TYLEEKLHIY bmy_11588T0/1-1168 PEEEGGRTSE SDEERRKAEA RVAKIQQCQ- ---------- ---------- 1251 1300 ENSP00000441913/1-1731 AELGELSGFE DVHLEPHLLI KPDPGEPPQA ASLLAAALKE AESLQVAVKA ENSBTAP00000007406/1-1361 AKLGELSGFQ DVHLEPHLLI QPDPGEPPQA ASLLAAALKE AESLQVAVKA ENSTTRP00000006486/1-667 AELGELSGFE DVHLEPHLLI KPDPGEPPQA ASLLAAALKE AESLQVAVKA bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000441913/1-1731 SQMGAVSQSC EDSCGDSVLA DTLSSHDVPG SPTASLVTGG REGRGCSDVD ENSBTAP00000007406/1-1361 SQMSDACQSP EEGCGEPALP DVLHSQDAPG SSTASLVTEG TGGRGCWDVD ENSTTRP00000006486/1-667 SQTSDMCQSP KEGCGEPALQ DVFSSRDAPG SPTASLVTEG TGGRGCWDVD bmy_11588T0/1-1168 ---------- ---------- ---------- ----ALVTEG TGGRGCWDVD 1351 1400 ENSP00000441913/1-1731 PGIQGVVTDL AVSDAGEKVE CRNFPGSSQS EIIQAIQNLT RLLYSLQ--- ENSBTAP00000007406/1-1361 AGTQGVGTDL AVSDAGEKVL YRAFPGLLQN EYKSTIYNMR RMLYKLQ--- ENSTTRP00000006486/1-667 PGTQGVGTDL AVSDAGEKVE YRSFPSSSQS EIIQAIQNLT RLLYSLQ--- bmy_11588T0/1-1168 PGTQGVGTDL AVSDAGEKVE YRSFPGSSQS EIIQAIQNLT RLLYSLQAIP 1401 1450 ENSP00000441913/1-1731 ---------- -------AAL TIQDSHIEIH RLVLQQQEGL SLGHSILRGG ENSBTAP00000007406/1-1361 ---------- -------AAL TIQDSHIEIH RLVLQQRESL APGPA-FRGS ENSTTRP00000006486/1-667 ---------- -------AAL TVQDSHIEVH RLALQQQEGL SPGPS-FRGS bmy_11588T0/1-1168 LRKCRQAYLK CQGQSQEAAL TVQDSHIEIH RLALQQQEGL SPGPS-FRGS 1451 1500 ENSP00000441913/1-1731 PLQDQ-KSRD ADRQHEELAN VHQLQHQLQQ EQRRWLRRCE QQQRAQATRE ENSBTAP00000007406/1-1361 PFQDQEKSRS LEKQREELAD THKLQLQFQQ DQHRWLRRCD QQQREQEARA ENSTTRP00000006486/1-667 PFQDEEKRRS LEKRREELAN LHELQQQFQQ DRQRWHRRCD QQQREQEAKA bmy_11588T0/1-1168 PFQDQEKHRG LEKRREELAN LHKLQHQFQQ DQQRWRRRCD QQQREQEAKA 1501 1550 ENSP00000441913/1-1731 SWLQEREREC QSQEELLLRS RGELDLQLQE YQHSLERLRE GQRLVEREQA ENSBTAP00000007406/1-1361 SRLQEREREC RAQEELLLRS RGELDQQLQD YQQSLERLRE GQRLVERERE ENSTTRP00000006486/1-667 SRLQEREREC RLQEELLLSS RGQLDQQRQE YQQSLERLRE GQRLVERERE bmy_11588T0/1-1168 SRLQEREREC QVQEELLLRS RGELDLQLQE YQQSLERLQE GQRLVERERE 1551 1600 ENSP00000441913/1-1731 RMRAQQSLLG HWKHGRQRSL PAVLLPGGPE VMELNRSESL CHENSFFINE ENSBTAP00000007406/1-1361 RMRAQQSLLR HWKHGRQSSL PAAFSPGALE VMELNRSETL RHENSFFINE ENSTTRP00000006486/1-667 RMRAQKSLLR GWKHSRQRSL PAALPGGGVE VMELNQSEGL CHENSFFINE bmy_11588T0/1-1168 RMRAQKSLLR GWKHSRQRSL PAALPRGGME VMELNQSEGL CHENSFFINE 1601 1650 ENSP00000441913/1-1731 ALVQMSFNTF NKLNPSVIHQ DATYPTTQSH SDLVRTSEHQ VDLKVDPSQP ENSBTAP00000007406/1-1361 ALVQMSLNPL NKPPPPGIHQ DAAYPPGIPH SDLVRTTENQ VDLKTDVSQP ENSTTRP00000006486/1-667 ALAQMSLNTL NEPTPADIHQ DATYPPSISH SDLVRTSENQ VDLKMNISQP bmy_11588T0/1-1168 ALVQMSLNTL NKPTPADIHQ DATYPPSISH SNLVRTSENQ VDLKMNISQP 1651 1700 ENSP00000441913/1-1731 SNVSHKLWTA AGSGHQILPF HESSKDSCKN GSSMTKCSCT LTSPPGLWTG ENSBTAP00000007406/1-1361 SDINHELWIA AGACHQIPPL HQSSKDSCKN ---------- ---------- ENSTTRP00000006486/1-667 LDVSHELWIA AGSCHQIPPL HQSSKDSCKN ---------- ---------- bmy_11588T0/1-1168 LDVSHELWIA AGSCHQIPPL HQSSKDSCKN ---------- ---------- 1701 1750 ENSP00000441913/1-1731 TTSTLKDLDT SHTESPTPHD SNSHRPQLQA FITEAKLNLP TRTMTRQDGE ENSBTAP00000007406/1-1361 ------DVNI SQTAYPPLHD SNPHSPRLQT FIAEEKLNL- -QRVTRQDGE ENSTTRP00000006486/1-667 ------DLDL SQTACPPPQD SNPHGPQLQT FIAEAKLNL- -QRVTRQDGE bmy_11588T0/1-1168 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSP00000441913/1-1731 TGDGAKENIV YL ENSBTAP00000007406/1-1361 TGNGAEENIV YL ENSTTRP00000006486/1-667 TGDGAEETIV YL bmy_11588T0/1-1168 -GN------- --