KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:56 2014 Check: 00 .. Name: bmy_05180T0/1-286 Len: 594 Check: 6277 Weight: 1.00 Name: ENSTTRP00000002614/1-520 Len: 594 Check: 3170 Weight: 1.00 Name: BACU017856/1-537 Len: 594 Check: 3273 Weight: 1.00 Name: ENSP00000323645/1-583 Len: 594 Check: 104 Weight: 1.00 Name: ENSBTAP00000007408/1-528 Len: 594 Check: 9685 Weight: 1.00 // 1 50 bmy_05180T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002614/1-520 ---------- ---------- ---------- ---------- ---------- BACU017856/1-537 ---------- ---------- --MCIPIDPA VLPLA----- ---------- ENSP00000323645/1-583 MAGSEQQRPR RRDDGDSDAA AAAAAPLQDA ELALAGINML LNNGFRESDQ ENSBTAP00000007408/1-528 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05180T0/1-286 ---------- -MSFGAS--- -------FVS FL-NAMMTFE EEKMQLACDD ENSTTRP00000002614/1-520 ---------- -MSFGAS--- -------FVS FL-NAMMTFE EEKMQLACDD BACU017856/1-537 -------VYP KNTFGLPADD TYKDVPLSVR YMCNAMMTFE EEKMQLACDD ENSP00000323645/1-583 LFKQYRNHSP LMSFGAS--- -------FVS FL-NAMMTFE EEKMQLACDD ENSBTAP00000007408/1-528 -----RNHSP LMSFGAS--- -------FVS FL-NAMMTFE EEKMQLACDD 101 150 bmy_05180T0/1-286 LKTTEKLCES EEVGVIETIK NKIKKNVDVR KSTPSMVDRL QRQIIIADCQ ENSTTRP00000002614/1-520 LKTTEKLCES EEVGVIETIK NKIKKNVDVR KSTPSMVDRL QRQ-IIADXX BACU017856/1-537 LKTTEKLCES EEIGVIETIK NKIKKNVDVR KSTPSMVDRL QRQIIIADCQ ENSP00000323645/1-583 LKTTEKLCES EEAGVIETIK NKIKKNVDVR KSAPSMVDRL QRQIIIADCQ ENSBTAP00000007408/1-528 LKTTEKLCES EEAGVIETIK NKIKKNVDVR KSTPSMVDRL QRQIIIADCQ 151 200 bmy_05180T0/1-286 VYLAVLSFVK QELSAYIKGG WILRKAWKIY NKCYLDINAL QELYQKKLTE ENSTTRP00000002614/1-520 XXXXXXXXXX XXXXXYIKGG WILRKAWKIY NKCYLDINAL QELYQKKLTE BACU017856/1-537 VYLAVLSFVK QELSAYIKGG WILRKAWKIY NKCYLDINAL QELYQKKLME ENSP00000323645/1-583 VYLAVLSFVK QELSAYIKGG WILRKAWKIY NKCYLDINAL QELYQKKLTE ENSBTAP00000007408/1-528 VYLAVLSFVK QELSAYIKGG WILRKAWKIY NKCYLDINAL QELYQKKLRE 201 250 bmy_05180T0/1-286 EPLTSDAAND NHIVAEGVSE ESLNRLKGAV SFGYGLFHLC ISMVPPNLLK ENSTTRP00000002614/1-520 EPLTSDAAND NHIVAEGVSE ESLNRLKGAV SFGYGLFHLC ISMVPPNLLK BACU017856/1-537 EPLTSDAAND NHIVAEGVSE ESLNRLKGAV SFGYGLFHLC ISMVPPNLLK ENSP00000323645/1-583 ESLTSDAAND NHIVAEGVSE ESLNRLKGAV SFGYGLFHLC ISMVPPNLLK ENSBTAP00000007408/1-528 ERLTSDAAND NHIVAEGVSE ESLNRLKGAV SFGYGLFHLC ISMVPPNLLK 251 300 bmy_05180T0/1-286 IINLLGFPGD RLQGLSSLMY ASESKDMKAP LATLALLWYH TVVRPFFALD ENSTTRP00000002614/1-520 IINLLGFPGD RLQGLSSLMY ASESKDMKAP LATLALLWYH TVVRPFFALD BACU017856/1-537 IINLLGFPGD RLQGLSSLMY ASESKDMKAP LATLALLWYH TVVRPFFALD ENSP00000323645/1-583 IINLLGFPGD RLQGLSSLMY ASESKDMKAP LATLALLWYH TVVRPFFALD ENSBTAP00000007408/1-528 IINLLGFPGD RLQGLSSLMY ASESKDMKAP LATLALLWYH TVVRPFFALD 301 350 bmy_05180T0/1-286 GSDNKAGLDE AKEILLKKEA AYPNSSLFMF FKGRIQRLE- ---------- ENSTTRP00000002614/1-520 GSDNKAGLDE AKEILLKKEA AYPNSSLFMF FKGRIQRLEC QINSALTSFH BACU017856/1-537 GSDNKAGLDE AKEILLKKEA AYPNSSLFMF FKGRIQRLEC QINSALTSFH ENSP00000323645/1-583 GSDNKAGLDE AKEILLKKEA AYPNSSLFMF FKGRIQRLEC QINSALTSFH ENSBTAP00000007408/1-528 GSDNKAGLDE AKEILLKKEA AYPNSSLFMF FKGRIQRLEC QINSALTSFH 351 400 bmy_05180T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002614/1-520 TALELAVDQR EIQHVCLYEI GWCSMIELNF KDAFDSFERL KNESRWSQCY BACU017856/1-537 TALELAVDQR EIQHVCLYEI GWCSMIELNF KDAFYSFERL KNESRWSQCY ENSP00000323645/1-583 TALELAVDQR EIQHVCLYEI GWCSMIELNF KDAFDSFERL KNESRWSQCY ENSBTAP00000007408/1-528 TALELAVDQR EIQHVCLYEI GWCSMIELNF KDAFNSFERL KNESRWSQCY 401 450 bmy_05180T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002614/1-520 YAYLTAVC-G ATGDVDGAQI VFKEVQKLFK RKNNQIEQFS VKKAERFRKQ BACU017856/1-537 YAYLTAVCQG ATGDVDGAQI VFKEVQKLFK RKNNQIEQFS VKKAERFRKQ ENSP00000323645/1-583 YAYLTAVCQG ATGDVDGAQI VFKEVQKLFK RKNNQIEQFS VKKAERFRKQ ENSBTAP00000007408/1-528 YAYLTAVCQG ATGDVDGAQI VFKEVQKLFK RKNNQIEQFS VKKAERFRKQ 451 500 bmy_05180T0/1-286 ---------- ------LW-- ---------- ---------- ---------- ENSTTRP00000002614/1-520 TPTKALCVLA SIEVLYLWKA LPNCSLPNLQ RMSQACHEVD DSSVVGLKYL BACU017856/1-537 TPTKALCVLA SIEVLYLWKA LPNCSLPNLQ RMSQACHEVG DSSVVGLKYL ENSP00000323645/1-583 TPTKALCVLA SIEVLYLWKA LPNCSFPNLQ RMSQACHEVD DSSVVGLKYL ENSBTAP00000007408/1-528 TPTRALCVLA SIEVLYLWKA LPNCSPPNLQ RMSQACHGVD DSSVVGLKYL 501 550 bmy_05180T0/1-286 ---------- ---------- -------AKQ G--------- ---------- ENSTTRP00000002614/1-520 FLGAIHKCLG NSEDAVQFFQ RAVKDELCRQ NNLYVQPYAC YELGCLLLDK BACU017856/1-537 FLGAIHKCLG NSEAAVQFFQ RAVKDELCRQ NNLYVQPYAC YELGCLLLDK ENSP00000323645/1-583 LLGAIHKCLG NSEDAVQYFQ RAVKDELCRQ NNLYVQPYAC YELGCLLLDK ENSBTAP00000007408/1-528 LLGAIHKCLG NSEDAVQFFQ RAVKDELCRQ NNLYVQPYAC YELGCLLLDK 551 600 bmy_05180T0/1-286 ---------- ---------- ---------- -RGPLALMRR DAAP ENSTTRP00000002614/1-520 PETVGRGRSL LLQAKEDFSG YDFENRLHVR IHAALASMRE LVPQ BACU017856/1-537 PE-------- -----EDFSG YDFENRLHVR IHAALASMRE LVPQ ENSP00000323645/1-583 PETVGRGRAL LLQAKEDFSG YDFENRLHVR IHAALASLRE LVPQ ENSBTAP00000007408/1-528 PETVGRGRTL LLQAKEDFSG YDFENRLHVR IHAALASMRE LVPQ