KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:57 2014 Check: 00 .. Name: bmy_05175T0/1-605 Len: 968 Check: 4750 Weight: 1.00 Name: ENSTTRP00000002616/1-949 Len: 968 Check: 9586 Weight: 1.00 Name: BACU017855/1-966 Len: 968 Check: 5930 Weight: 1.00 Name: ENSBTAP00000007419/1-952 Len: 968 Check: 1694 Weight: 1.00 // 1 50 bmy_05175T0/1-605 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002616/1-949 MSTEAEQQLL HHARNGNAEE VRQLLETMER NEVTADINCK XXXXXXXXXX BACU017855/1-966 MSTEAEQQLL HHARNGNAEE VRQLLETMER NEVTADINCK GRSKSNLGWT ENSBTAP00000007419/1-952 MSTDAEQQLL HHARNGNAEE VRQLLETMER NEVIADINCK GRSKSNLGWT 51 100 bmy_05175T0/1-605 ---------- ------MKRV GRELS----L KDQSLCRCV- --RSQSGICM ENSTTRP00000002616/1-949 XXXXXXXXXX XXXXXXXXXA GAEVNVLNDM GDTPLHRAAF TGRKELVMLL BACU017855/1-966 PLHLACYFGH RQVVQDLLKA GAEVNVLNDM GDTPLHRAAF TGRKELVMLL ENSBTAP00000007419/1-952 PLHLACYFGH RQVVQDLLKA GAEVNVLNDM GDTPLHRAAF TGRKELVMLL 101 150 bmy_05175T0/1-605 VENRAGV--- ----HHSQSL VHGTSL---- ---------- ---------- ENSTTRP00000002616/1-949 LEYNAHTTVV NGNGQTAKEV THDKEIRNML EAVERTQQRK LEELLLAAAR BACU017855/1-966 LEYNAHTTVV NGNGQTAKEV THDKEIRNML EAVERTQQRK LEELLLAAAR ENSBTAP00000007419/1-952 LEHNADTTVV NGNGQTAKEV THDKEIRNML EAVERTQQRK LEELLLAAAR 151 200 bmy_05175T0/1-605 ---------- ---PSP---- ---------- ---------- ---------- ENSTTRP00000002616/1-949 EGRTAELTAL LNRPNPPAVN CSDQLGNTPL HCAAYRAHKQ CALKLLKSGA BACU017855/1-966 EGRTAELTAL LNRPNPPAVN CSDQLGNTPL HCAAYRAHKQ CALKLLKSGA ENSBTAP00000007419/1-952 EGRTAELTAL LNRPNPPDVN CSDQLGNTPL HCAAYRAHKQ CALKLLKSGA 201 250 bmy_05175T0/1-605 ---MFSRNDF S--------- ---------- ---------- ---------- ENSTTRP00000002616/1-949 DPNLKNKNDQ KPLDAQGVXX XXXXXXXXXX XXXXXXXXXX XXXXSSRFFG BACU017855/1-966 DPNLKNKNDQ KPLDLAQGAE MKHVLVGNKA IYKALKRYEG PLWKSSRFFG ENSBTAP00000007419/1-952 DPNLKNKNDQ KPLDLAQGAE MKHVLVGNKI VHKALKRYEG PLWKSSRFFG 251 300 bmy_05175T0/1-605 ---IWSILRK CIGMSYPERL EKSRVPSVQN IIPLT-LLCT E------LVF ENSTTRP00000002616/1-949 WRLFWVVLEH GVLSWYRKQP DAVHNIYRQG CKHLTQAVCT VKPTDSCLFF BACU017855/1-966 WRLFWVVLEH GVLSWYRKQP DAVHNIYRQG CKHLTQAVCT VKPTDSCLFF ENSBTAP00000007419/1-952 WRLFWVVLEH GVLSWYRKQP DAVHNTYRQG CKHLTQAVCT VKSTDSCLFF 301 350 bmy_05175T0/1-605 VPC------- ---------- ---------- SHLAFGS-YC SRGTM----- ENSTTRP00000002616/1-949 IKCFDDTVHG FRVPKNSFQQ TREDWLEAIE EHSAYSTHYC SQDQLTDDEE BACU017855/1-966 IKCFDDTVHG FRVPKNSLQQ TREDWLEAIE EHSAYSTHYC SQDQLTDDEE ENSBTAP00000007419/1-952 IKCFDDTVHS FRVPKNSLQQ TREDWLEAIE EHSAYSTHYC SQDQVTDDEE 351 400 bmy_05175T0/1-605 ----SPLSWA AESVQGAKCR KREQSQKWHH LR-------- ---------- ENSTTRP00000002616/1-949 EDAVSAVDLK ESLEKAQICQ QRLDREISNF LRMIKECDVA KEMLPSFLQK BACU017855/1-966 EDAVSAVDLK ESLEKAQTCQ QRLDREISNF LRMIKECDAA KEMLPSFLQK ENSBTAP00000007419/1-952 DDAVSAVDLK ESLEKAQICQ QRLDKEISNF LKMIKEGDMA QEMLPSFLQK 401 450 bmy_05175T0/1-605 ---------- ---------- ---------- ---------- HILSRARAHV ENSTTRP00000002616/1-949 VEVVSEASRE TCVALSDCLN LFTKQEGVRN FKLEQEQEKN KILSEALATL BACU017855/1-966 VEVVSEASRE TCVALSACLN LFTKQEGVRN FKLEQEQEKN KILSEALATL ENSBTAP00000007419/1-952 VEVVAEASRE TCVALSDCLH LFTKQEGVRN FKLEQEQEKN KILSEALATL 451 500 bmy_05175T0/1-605 AT-------- ---------L VNPCHLGDWT GQSASSESLS ---------- ENSTTRP00000002616/1-949 ATEHHELEQS LVKGSPPLSI LSEDEFYDAL SDSESERSLS RLEAVTAHCF BACU017855/1-966 ATEHHELEQS LVKGSPPLSI LSEDEFYDAL SDSESGRSLS RLEAVTAHCF ENSBTAP00000007419/1-952 ATEHHELEQS LVKGSPPLSI FSEDEFYDAL SDSESEGSLS RLEAVTAHSF 501 550 bmy_05175T0/1-605 --------SG DYAMPSGWGS -GGNRLELKP RCHLSAFSAA RLPRRQ---- ENSTTRP00000002616/1-949 EEEGEHLRSR KHRMSEGKDC GGGDALSNGI KKHRTSLPSP MFSRNDFSIW BACU017855/1-966 EEEGEHLRGR KHRMSEGKDC GGGDALSNGI KKHRTSLPSP MFSRNDFSIW ENSBTAP00000007419/1-952 DEEAEPPSSR QHRMSEGKDC GGGDALSNGI KKHRTSLPSP MFSRNDFSIW 551 600 bmy_05175T0/1-605 -------DEE LSKITMPVIF NEPLSFLQRL TEYMEHTYLI HKASSFADPV ENSTTRP00000002616/1-949 SILRKCIGME LSKITMPVIF NEPLSFLQRL TEYMEHTYLI HKASSFADPV BACU017855/1-966 SILRKCIGME LSKITMPVIF NEPLSFLQRL TEYMEHTYLI HKASSFTDPV ENSBTAP00000007419/1-952 SILRKCIGME LSKITMPVIF NEPLSFLQRL TEYMEHTYLI HKASSLADPV 601 650 bmy_05175T0/1-605 ERMQCVAAFA VSAVASQWER TGKPFNPLLG ETYELV--RD DLGFRLISEQ ENSTTRP00000002616/1-949 ERMQCVAAFA VSAVASQWER TGKPFNPLLG ETYELV--RD DLGFRLISEQ BACU017855/1-966 ERMQCVAAFA VSAVASQWER TGKPFNPLLG ETYELV--RD DLGFRLISEQ ENSBTAP00000007419/1-952 ERMQCVAAFA VSAVASQWER TGKPFNPLLG ETYELVRLRD DLGFRLISEQ 651 700 bmy_05175T0/1-605 VSHHPPISAF HAEGLNNDFI FHGSVYPKLK FWGK------ ---------- ENSTTRP00000002616/1-949 VSHHPPISAF HAEGLNNDFI FHGSIYPKLK FWGK------ ---------- BACU017855/1-966 VSHHPPISAF HAEGLNNDFI FHGSISSKLK FWGKSXXXXX XXXXXXXXXX ENSBTAP00000007419/1-952 VSHHPPISAF HAEGLNNDFI FHGSIYPKLK FWGK------ ---------- 701 750 bmy_05175T0/1-605 SVEAEPKGTI TLELLEHNEA YTWTNPTCCV HNIIVGKLWI EQYGNVEITN ENSTTRP00000002616/1-949 SVEAEPKGTI TLELLEHNEA YTWTNPTCCV HNIIVGKLWI EQYGNVEITN BACU017855/1-966 SVEAEPKGTI TLELLEHNEA YTWTNPTCCV HNIIVGKLWI EQYGNMEITN ENSBTAP00000007419/1-952 SVEAEPKGTI TLELLEHNEA YTWTNPTCCV HNIIVGKLWI EQYGNVEITN 751 800 bmy_05175T0/1-605 HKTADKCVLN FKPCGLFGKE LHKVEGYIQD KSKKKLCALY GKWTECLYSV ENSTTRP00000002616/1-949 HKTADKCVLN FKPCGLFGKE LHKVEGYIQD KSKKKLCALY GKWTECLYSV BACU017855/1-966 HKTADKCVLN FKPCGLFGKE LHKVEGYIQD KSKKKLCALY GKWTECLYSV ENSBTAP00000007419/1-952 HKTGDKCVLN FKPCGLFGKE LHKVEGYIQD KSKKKLRALY GKWTECLYSV 801 850 bmy_05175T0/1-605 DPATFDAYKK NDKKNTEEKK NSKQMSASEE SDEMPMPDSE SVFVIPGSVL ENSTTRP00000002616/1-949 DPATFDAYKK NDKKNTEEKK NSK-MSASEE SDEMPMXXXX XXXXXXXXXX BACU017855/1-966 DPATFDAYKK NDKKNTEEKK NSKQMSASEE SDEMPMPDSE SVFVIPGSVL ENSBTAP00000007419/1-952 DPATFDAYKK NDKKNTEEKK NSKQMSASEE SDEMPMPDSE SVFVIPGSVL 851 900 bmy_05175T0/1-605 LWRIAPRPPN STQMYNFTSF AMVLNEVDKE MESVIPKTDC RLRPDIRAME ENSTTRP00000002616/1-949 XXXXXXXXXX XXXMYNFTSF AMVLNEVDKE MEGVIPKTDC RLRPDIRAME BACU017855/1-966 LWRIAPRPPN STQMYNFTSF AMVLNEVDKE MESVIPKTDC RLRPDIRAME ENSBTAP00000007419/1-952 LWRIAPRPPN SAQMYNFTSF AMVLNEVDKE MESVIPKTDC RLRPDIRAME 901 950 bmy_05175T0/1-605 NGEIDQASEE KKRLEEKQRA ARKSRSKSEE EWKTRWFHQG PNPYSGAQDW ENSTTRP00000002616/1-949 NGEIDQASEE KKRLEEKQRA ARKNRSKLEE DWKTRWFHQG PNPYSGAQDW BACU017855/1-966 NGEIEQASEE KKRLEEKQRA ARKSRSKSEE EWKTRWFHQG PNPYSGAQDW ENSBTAP00000007419/1-952 NGEIDQASEE KKRLEEKQRA ARKNRSKSEE DWKTRWFHQG PNPYSGAQDW 951 1000 bmy_05175T0/1-605 LYSGSYWDRN YFNLPDIY ENSTTRP00000002616/1-949 LYSGSYWDRN YFNLPDIY BACU017855/1-966 LYSGSYWDRN YFNLPDIY ENSBTAP00000007419/1-952 LYSGSYWDRN YFNLPDIY