KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:31:59 2014 Check: 00 .. Name: ENSTTRP00000006426/1-1254 Len: 1290 Check: 8076 Weight: 1.00 Name: ENSP00000265723/1-1286 Len: 1290 Check: 2375 Weight: 1.00 Name: bmy_19468T0/1-847 Len: 1290 Check: 6744 Weight: 1.00 Name: ENSBTAP00000007432/1-1275 Len: 1290 Check: 1009 Weight: 1.00 // 1 50 ENSTTRP00000006426/1-1254 ---------- ---------- ---------K QDKEKTKKVN LIGPLTLXXX ENSP00000265723/1-1286 MDLEAAKNGT AWRPTSAEGD FELG--ISSK QKRKKTKTVK MIGVLTLFRY bmy_19468T0/1-847 MDLEAGRXET VRIPRKTEDE FERGSSSSSK QDKEKTKKVN LIGPLTLFRY ENSBTAP00000007432/1-1275 MDPEVGRIAT FRITETREDG FELG--VSSS QAKEKMKKVN LIGPLTLFRY 51 100 ENSTTRP00000006426/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXNF ENSP00000265723/1-1286 SDWQDKLFMS LGTIMAIAHG SGLPLMMIVF GEMTDKFVDT AGNFSFPVNF bmy_19468T0/1-847 SDWQDKLFMS FGTIMAIAHG SGLPLMMIVF GEMTDRFVNI GGNFSFP--- ENSBTAP00000007432/1-1275 SDWQDKLFMS FGTIMAITHG SGLPLMMIVF GEMTDRFVNT GGNFSLPVNF 101 150 ENSTTRP00000006426/1-1254 SLLMLNPARI LEEEMTRYAY YYSGLGAGVL VAAYIQVSFW TLAAGRQIKK ENSP00000265723/1-1286 SLSLLNPGKI LEEEMTRYAY YYSGLGAGVL VAAYIQVSFW TLAAGRQIRK bmy_19468T0/1-847 ---------- ---------- ---GLGAGVL VAAYIQVSFW TLAAGRQIKK ENSBTAP00000007432/1-1275 SLAMLNPGRI LEEEMTRYAY YYSGLGAGVL VAAYIQVSFW TLAAGRQIKK 151 200 ENSTTRP00000006426/1-1254 IRQEFFHAIL RQEIGWFDIN DTTELNTRLT DDISKISEGI GDKVGMFFQA ENSP00000265723/1-1286 IRQKFFHAIL RQEIGWFDIN DTTELNTRLT DDISKISEGI GDKVGMFFQA bmy_19468T0/1-847 IRQEFFHAIL RQEIGWFDIN DTTELSTRLT E--------- --------HE ENSBTAP00000007432/1-1275 IRQEFFHAIL RQEIGWFDIS DITELNTRLT DDISKISEGI GDKVGMFFQA 201 250 ENSTTRP00000006426/1-1254 IATFFAGFIV GFLRGWKLTL VIMAISPILG LSTAVWAKIL SA-SDKELAA ENSP00000265723/1-1286 VATFFAGFIV GFIRGWKLTL VIMAISPILG LSAAVWAKIL SAFSDKELAA bmy_19468T0/1-847 CFSFF----- ---------- ---------- -------QIL SAFSDKELAA ENSBTAP00000007432/1-1275 IATFFAGFIV GFIRGWKLTL VIMAISPILG LSTAVWAKIL SAFSDKELAA 251 300 ENSTTRP00000006426/1-1254 YAKAGAVAEE ALGAIKTVIA FGGQNRELKR YQKHLENAKK IGIKKAISAN ENSP00000265723/1-1286 YAKAGAVAEE ALGAIRTVIA FGGQNKELER YQKHLENAKE IGIKKAISAN bmy_19468T0/1-847 YAKAGAVAEE ALGAIRTVIA FGGQNRELKR ---------- ---------- ENSBTAP00000007432/1-1275 YAKAGAVAEE ALGAIRTVIA FGGQKRELER YQKHLENAKR IGIKKAISAN 301 350 ENSTTRP00000006426/1-1254 ISMGIAFLLI YASYALAFWY GSTLVIAKEY TVGNAMTVFF SIMIGAFSVG ENSP00000265723/1-1286 ISMGIAFLLI YASYALAFWY GSTLVISKEY TIGNAMTVFF SILIGAFSVG bmy_19468T0/1-847 ---SAAFF-- ---------- ---------- -------VFF SIMIGAFSIG ENSBTAP00000007432/1-1275 ISMGTAFLLI YASYALAFWY GSTLVIAKEY TIGNAITVFF SILIGAFSIG 351 400 ENSTTRP00000006426/1-1254 QAAPCIDAFA NARGAAYAIF AIIDNXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265723/1-1286 QAAPCIDAFA NARGAAYVIF DIIDNNPKID SFSERGHKPD SIKGNLEFND bmy_19468T0/1-847 QAAPCIDAFA NARGAAYAIF AIIDNNPKID SFSERGHKPD NIKGNLEFKD ENSBTAP00000007432/1-1275 QAAPCIDAFA NARGAAYAIF AIIDSDPKID SFSERGHKPD NIKGNLEFRD 401 450 ENSTTRP00000006426/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265723/1-1286 VHFSYPSRAN VKILKGLNLK VQSGQTVALV GSSGCGKSTT VQLIQRLYDP bmy_19468T0/1-847 VHFCYPARPD VKILKALNLK VESGQMVALV GNSGCGKSTV VQLIQRLYDP ENSBTAP00000007432/1-1275 VHFSYPARPD VQILKGLNLK VESGQTVALV GNSGCGKSTV VQLVQRLYDP 451 500 ENSTTRP00000006426/1-1254 XXXXITIDGQ DIRMFNVRYL REIIGVVSQE PVLFSTTIAE NIRYGRGNVT ENSP00000265723/1-1286 DEGTINIDGQ DIRNFNVNYL REIIGVVSQE PVLFSTTIAE NICYGRGNVT bmy_19468T0/1-847 TEGMITIDGQ DIRMFNVRYL REIIGVVSQE PVLFSTTIAE NIRYGRGNVT ENSBTAP00000007432/1-1275 DVGSIIIDGQ DIRTFNVKYL REIIGVVSQE PVLFATTIAE NIRYGRGNVT 501 550 ENSTTRP00000006426/1-1254 MDEIKKAVKE ANAYEFIMKL PQKFDTLVGE RGAQLSGGQK QRIAIARALV ENSP00000265723/1-1286 MDEIKKAVKE ANAYEFIMKL PQKFDTLVGE RGAQLSGGQK QRIAIARALV bmy_19468T0/1-847 MDEIKKAVKE ANAYEFIMKL PQKFDTLVGE RGAQLSGGQK QRIAIARALV ENSBTAP00000007432/1-1275 MDEIQQAVKE ANAYEFIMRL PQKFDTLVGE RGAQLSGGQK QRIAIARALV 551 600 ENSTTRP00000006426/1-1254 RNPKILLLDE XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265723/1-1286 RNPKILLLDE ATSALDTESE AEVQAALDKA REGRTTIVIA HRLSTVRNAD bmy_19468T0/1-847 RNPKILLLDE ATSALDTESE AEVQAALDKA REGRTTIVIA HRLSTIQNAD ENSBTAP00000007432/1-1275 RNPKILLLDE ATSALDTESE AEVQAALDKA REGRTTIVIA HRLSTIRNAD 601 650 ENSTTRP00000006426/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXTLGSQIQ PEEFKVARTD ENSP00000265723/1-1286 VIAGFEDGVI VEQGSHSELM KKEGVYFKLV NMQTSGSQIQ SEEFE--LND bmy_19468T0/1-847 VIAGFEDGVI VEQGSHKELM KKEGVYFRLV NMQTLGSQIQ SEEFKVALTD ENSBTAP00000007432/1-1275 VIAGFDDGVI VEQGSHGELM KKEGVYFRLV NTQISGSQIQ SEEFKVALAD 651 700 ENSTTRP00000006426/1-1254 ENPAM----- GLARPIVRSS FHKSLRNSRK YQNAFDVETI ELGETVPXXX ENSP00000265723/1-1286 EKAATRMAPN GWKSRLFRHS TQKNLKNSQM CQKSLDVETD GLEANVPPVS bmy_19468T0/1-847 EKPAM----- GLAHPIVRSS FHKSLRNSRK YQNAFDVETI ELDETVPPVS ENSBTAP00000007432/1-1275 EKPAM----- GLTHPIVRRS LHKSLRSSRQ YQNGFDVETS ELDESVPPVS 701 750 ENSTTRP00000006426/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XIFGPGDDEV ENSP00000265723/1-1286 FLKVLKLNKT EWPYFVVGTV CAIANGGLQP AFSVIFSEII AIFGPGDDAV bmy_19468T0/1-847 FMKILKLNKT EWPYFVVGTL CAVANGALQP AFSVIFSEII EIFGPGDDEV ENSBTAP00000007432/1-1275 FLKILKLNKT EWPYLVVGTL CAVANGALQP AFSVIFSEMI AIFGPGDDEV 751 800 ENSTTRP00000006426/1-1254 KQQKCNMFSL LFLGLGIISF FTFFLQGFTF GKAGEILTTR LRSMAFKAML ENSP00000265723/1-1286 KQQKCNIFSL IFLFLGIISF FTFFLQGFTF GKAGEILTRR LRSMAFKAML bmy_19468T0/1-847 KQQKCNMFSL LFLGLGIISF FTFFLQGFTL GKAGEILTTR LRSMAFKAML ENSBTAP00000007432/1-1275 KQQKCNMFSL LFLGLGIISF FTFFLQGFTF GKAGEILTTR LRLMAFKAML 801 850 ENSTTRP00000006426/1-1254 RQDMSWFDDH KNSTGALSTR LAIDASQVQG ATGTRLALIA QNTANLGTGI ENSP00000265723/1-1286 RQDMSWFDDH KNSTGALSTR LATDAAQVQG ATGTRLALIA QNIANLGTGI bmy_19468T0/1-847 RQDMSWFDDH KNSTGVLSTR LAMDASQVQG ATGTRLALIA QNTANLGTGI ENSBTAP00000007432/1-1275 RQDMSWFDDH KNSTGALSTR LAMDASQVQG ATGTRLALIA QNTANLGTGI 851 900 ENSTTRP00000006426/1-1254 IIAFVYGWQL TLLMLSVVPI IAVSGIVEMK LLAGNAKRDK KELETVGKIA ENSP00000265723/1-1286 IISFIYGWQL TLLLLAVVPI IAVSGIVEMK LLAGNAKRDK KELEAAGKIA bmy_19468T0/1-847 IIAFVYGWQL TLLMLSVVPI IAVSGIVEMK LLAGNAKRDK KELENVGKIA ENSBTAP00000007432/1-1275 IIAFIYGWQL TLLLLSVVPI IAVSGIVEMK LLAGNAKRDK KELETAGKIA 901 950 ENSTTRP00000006426/1-1254 TEAIENIRTV VSLTQERKFE SMYVEKLYGA YRNSVRKAHI YGITFSISQA ENSP00000265723/1-1286 TEAIENIRTV VSLTQERKFE SMYVEKLYGP YRNSVQKAHI YGITFSISQA bmy_19468T0/1-847 TEAIENIRTV VSLTQERKFE SMYVENLYGA YRNSVRKAHI YGITFSISQA ENSBTAP00000007432/1-1275 TEAIENIRTV VSLTQERKFE SMYVEKLYGA YRNSVRKAHV YGISFSISQA 951 1000 ENSTTRP00000006426/1-1254 FMYFSHAGCF RFGAYLIVNG HMHFRDVILX XXXXXXXXXX XXXXXXXXXX ENSP00000265723/1-1286 FMYFSYAGCF RFGAYLIVNG HMRFRDVILV FSAIVFGAVA LGHASSFAPD bmy_19468T0/1-847 FMYFSHAGCF RFGAYLIVNG HMHFRDVIM- ---------- ---------- ENSBTAP00000007432/1-1275 FMYFSYAGCF RFGAYLIVNG HMRFRDVILV FSAIVLGAVA LGHASSFAPD 1001 1050 ENSTTRP00000006426/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XDKFEGNVTL NEVVFNYPTR ENSP00000265723/1-1286 YAKAKLSAAH LFMLFERQPL IDSYSEEGLK PDKFEGNITF NEVVFNYPTR bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 YAKAKLSAAH LFKLFERQPL IDSHSEEGLR PDKFEGNVTL NEVVFNYPTR 1051 1100 ENSTTRP00000006426/1-1254 PNVPVLQGLS LEVKKGQTLA LVGSSGCGKS TVVQLLERFY DPLAGTVFVD ENSP00000265723/1-1286 ANVPVLQGLS LEVKKGQTLA LVGSSGCGKS TVVQLLERFY DPLAGTVFVD bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 PNVPVLRGLS LEVKKGQTLA LVGSSGCGKS TVVQLLERFY DPLAGTV--- 1101 1150 ENSTTRP00000006426/1-1254 FGFQLLDGQE AKKLNIQWLR AQLGIVSQEP VLFDCSIADN IAYGDNSRSV ENSP00000265723/1-1286 FGFQLLDGQE AKKLNVQWLR AQLGIVSQEP ILFDCSIAEN IAYGDNSRVV bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 ----LLDGHE AKKLNVQWLR AQLGIVLQEP VLFDCSIADN IAYGDNSRPV 1151 1200 ENSTTRP00000006426/1-1254 KMPEIVSAAK AANIHPFIET LPKKYETRVG DKGTQLSGGQ KQRIAIARAL ENSP00000265723/1-1286 SQDEIVSAAK AANIHPFIET LPHKYETRVG DKGTQLSGGQ KQRIAIARAL bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 TMPEIVSAAK AANIHPFIET LPHKYETRVG DKGTQLSGGQ KQRIAIARAL 1201 1250 ENSTTRP00000006426/1-1254 IRHPRILLLD EATSALDTES EKIVQEALDK AREGRTCIVI AHRLSTIQNA ENSP00000265723/1-1286 IRQPQILLLD EATSALDTES EKVVQEALDK AREGRTCIVI AHRLSTIQNA bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 IRHPRILLLD EATSALDTES EKIVQEALDK AREGRTCIVI AHRLSTIQNA 1251 1300 ENSTTRP00000006426/1-1254 DLIVVIENGK VKEHGTHQQL LAQRGIYFSM VSVQAGTQK- ENSP00000265723/1-1286 DLIVVFQNGR VKEHGTHQQL LAQKGIYFSM VSVQAGTQNL bmy_19468T0/1-847 ---------- ---------- ---------- ---------- ENSBTAP00000007432/1-1275 DLIVVIENGR VREHGTHQQL LAQKGIYFTM VSVQAGTQN-